RNA–Protein interactions for RNA: ENST00000489728.1

CPSF7-212, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 488 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-212ENST00000489728 NISCHQ9Y2I1 1504 aa26.84■■□□□ 1.89
CPSF7-212ENST00000489728 CCDC180Q9P1Z9 1646 aa23.91■■□□□ 1.42
CPSF7-212ENST00000489728 ABCC9O60706 1549 aa23.11■■□□□ 1.29
CPSF7-212ENST00000489728 NACADO15069 1562 aa22.42■■□□□ 1.18
CPSF7-212ENST00000489728 RB1CC1Q8TDY2 1594 aa22.41■■□□□ 1.18
CPSF7-212ENST00000489728 ZCCHC6Q5VYS8 1495 aaKnown RBP22.41■■□□□ 1.18
CPSF7-212ENST00000489728 MYO15BQ96JP2 1530 aa22.4■■□□□ 1.18
CPSF7-212ENST00000489728 DCAF1Q9Y4B6 1507 aa22.31■■□□□ 1.16
CPSF7-212ENST00000489728 DCAF8L2P0C7V8 631 aa22.17■■□□□ 1.14
CPSF7-212ENST00000489728 UNC13AQ9UPW8 1703 aa21.85■■□□□ 1.09
CPSF7-212ENST00000489728 BICRAQ9NZM4 1560 aa21.68■■□□□ 1.06
CPSF7-212ENST00000489728 SCRIBQ14160 1630 aa21.68■■□□□ 1.06
CPSF7-212ENST00000489728 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.05
CPSF7-212ENST00000489728 PABPN1Q86U42 306 aaKnown RBP eCLIP21.54■■□□□ 1.04
CPSF7-212ENST00000489728 EIF4G1Q04637 1599 aaKnown RBP21.1■□□□□ 0.97
CPSF7-212ENST00000489728 DNAJC5BQ9UF47 199 aa21.05■□□□□ 0.96
CPSF7-212ENST00000489728 CC2D2AQ9P2K1 1620 aa20.97■□□□□ 0.95
CPSF7-212ENST00000489728 BAZ1AQ9NRL2 1556 aaPredicted RBP20.83■□□□□ 0.92
CPSF7-212ENST00000489728 SMARCA4P51532 1647 aa20.81■□□□□ 0.92
CPSF7-212ENST00000489728 CECR2Q9BXF3 1484 aa20.81■□□□□ 0.92
CPSF7-212ENST00000489728 SMARCA2P51531 1590 aa20.69■□□□□ 0.9
CPSF7-212ENST00000489728 PEG3Q9GZU2 1588 aa20.67■□□□□ 0.9
CPSF7-212ENST00000489728 NCAPD3P42695 1498 aa20.66■□□□□ 0.9
CPSF7-212ENST00000489728 ATAD2BQ9ULI0 1458 aa20.65■□□□□ 0.9
CPSF7-212ENST00000489728 MROH2BQ7Z745 1585 aa20.63■□□□□ 0.89
CPSF7-212ENST00000489728 HMGXB3Q12766 1538 aa20.61■□□□□ 0.89
CPSF7-212ENST00000489728 BAZ1BQ9UIG0 1483 aaKnown RBP20.5■□□□□ 0.87
CPSF7-212ENST00000489728 RSF1Q96T23 1441 aaPredicted RBP20.45■□□□□ 0.86
CPSF7-212ENST00000489728 WIZO95785 1651 aa20.41■□□□□ 0.86
CPSF7-212ENST00000489728 TOP2AP11388 1531 aaKnown RBP20.27■□□□□ 0.84
CPSF7-212ENST00000489728 LAMC3Q9Y6N6 1575 aa20.12■□□□□ 0.81
CPSF7-212ENST00000489728 CADPSQ9ULU8 1353 aa20.03■□□□□ 0.8
CPSF7-212ENST00000489728 NESP48681 1621 aa20.02■□□□□ 0.8
CPSF7-212ENST00000489728 CCDC88BA6NC98 1476 aa19.97■□□□□ 0.79
CPSF7-212ENST00000489728 ERCC6Q03468 1493 aa19.97■□□□□ 0.79
CPSF7-212ENST00000489728 CFTRP13569 1480 aa19.96■□□□□ 0.79
CPSF7-212ENST00000489728 PDS5BQ9NTI5 1447 aa19.95■□□□□ 0.78
CPSF7-212ENST00000489728 SUPT5HO00267 1087 aaKnown RBP19.87■□□□□ 0.77
CPSF7-212ENST00000489728 PRDM2Q13029 1718 aa19.87■□□□□ 0.77
CPSF7-212ENST00000489728 KIF21AQ7Z4S6 1674 aa19.85■□□□□ 0.77
CPSF7-212ENST00000489728 THOC2Q8NI27 1593 aaKnown RBP19.8■□□□□ 0.76
CPSF7-212ENST00000489728 CUX2O14529 1486 aa19.79■□□□□ 0.76
CPSF7-212ENST00000489728 FANCD2Q9BXW9 1451 aa19.79■□□□□ 0.76
CPSF7-212ENST00000489728 CEP164Q9UPV0 1460 aa19.79■□□□□ 0.76
CPSF7-212ENST00000489728 MRC2Q9UBG0 1479 aa19.73■□□□□ 0.75
CPSF7-212ENST00000489728 WDR62O43379 1518 aa19.69■□□□□ 0.74
CPSF7-212ENST00000489728 ABCC8Q09428 1581 aa19.58■□□□□ 0.73
CPSF7-212ENST00000489728 URB2Q14146 1524 aaKnown RBP19.58■□□□□ 0.73
CPSF7-212ENST00000489728 DNMBPQ6XZF7 1577 aa19.52■□□□□ 0.71
CPSF7-212ENST00000489728 TOPBP1Q92547 1522 aa19.5■□□□□ 0.71
CPSF7-212ENST00000489728 IFT140Q96RY7 1462 aa19.38■□□□□ 0.69
CPSF7-212ENST00000489728 CUX1P39880 1505 aa19.37■□□□□ 0.69
CPSF7-212ENST00000489728 POLA1P09884 1462 aaPredicted RBP19.34■□□□□ 0.69
CPSF7-212ENST00000489728 TARBP1Q13395 1621 aaKnown RBP19.29■□□□□ 0.68
CPSF7-212ENST00000489728 WRNQ14191 1432 aaPredicted RBP eCLIP19.29■□□□□ 0.68
CPSF7-212ENST00000489728 BIVM-ERCC5R4GMW8 1640 aa19.29■□□□□ 0.68
CPSF7-212ENST00000489728 FGD5Q6ZNL6 1462 aa19.28■□□□□ 0.68
CPSF7-212ENST00000489728 TOP2BQ02880 1626 aa19.28■□□□□ 0.68
CPSF7-212ENST00000489728 WDR97A6NE52 1622 aa19.26■□□□□ 0.67
CPSF7-212ENST00000489728 SOGA1O94964 1423 aa19.23■□□□□ 0.67
CPSF7-212ENST00000489728 SYNJ1O43426 1573 aa19.23■□□□□ 0.67
CPSF7-212ENST00000489728 ZNF608Q9ULD9 1512 aaPredicted RBP19.2■□□□□ 0.66
CPSF7-212ENST00000489728 EIF4G3O43432 1585 aaKnown RBP19.19■□□□□ 0.66
CPSF7-212ENST00000489728 RAD54L2Q9Y4B4 1467 aa19.18■□□□□ 0.66
CPSF7-212ENST00000489728 ABCA10Q8WWZ4 1543 aa19.15■□□□□ 0.66
CPSF7-212ENST00000489728 AQRO60306 1485 aaKnown RBP eCLIP19.09■□□□□ 0.651e-7■■■■□ 24.9
CPSF7-212ENST00000489728 ABCA5Q8WWZ7 1642 aa19.07■□□□□ 0.64
CPSF7-212ENST00000489728 TDRD9Q8NDG6 1382 aaKnown RBP19.06■□□□□ 0.64
CPSF7-212ENST00000489728 GRIN2BQ13224 1484 aa19.04■□□□□ 0.64
CPSF7-212ENST00000489728 GAPVD1Q14C86 1478 aa19.03■□□□□ 0.64
CPSF7-212ENST00000489728 MAGI1Q96QZ7 1491 aaPredicted RBP19.02■□□□□ 0.63
CPSF7-212ENST00000489728 PBRM1Q86U86 1689 aa19.01■□□□□ 0.63
CPSF7-212ENST00000489728 DNAJC5Q9H3Z4 198 aa18.97■□□□□ 0.63
CPSF7-212ENST00000489728 SNAPC4Q5SXM2 1469 aa18.97■□□□□ 0.63
CPSF7-212ENST00000489728 ERICH3Q5RHP9 1530 aa18.95■□□□□ 0.62
CPSF7-212ENST00000489728 SYNJ2O15056 1496 aa18.91■□□□□ 0.62
CPSF7-212ENST00000489728 CHD1O14646 1710 aa18.91■□□□□ 0.62
CPSF7-212ENST00000489728 OSCARQ8IYS5 282 aa18.9■□□□□ 0.62
CPSF7-212ENST00000489728 KIF27Q86VH2 1401 aa18.9■□□□□ 0.62
CPSF7-212ENST00000489728 ADAMTS12P58397 1594 aa18.88■□□□□ 0.61
CPSF7-212ENST00000489728 FHAD1B1AJZ9 1412 aa18.84■□□□□ 0.61
CPSF7-212ENST00000489728 TRIM41Q8WV44 630 aa18.83■□□□□ 0.6
CPSF7-212ENST00000489728 CHMP7Q8WUX9 453 aaPredicted RBP18.82■□□□□ 0.6
CPSF7-212ENST00000489728 CUL7Q14999 1698 aa18.81■□□□□ 0.6
CPSF7-212ENST00000489728 GRIN2AQ12879 1464 aa18.79■□□□□ 0.6
CPSF7-212ENST00000489728 FBLN2P98095 1184 aa18.79■□□□□ 0.6
CPSF7-212ENST00000489728 IGF1RP08069 1367 aa18.77■□□□□ 0.6
CPSF7-212ENST00000489728 CLASP1Q7Z460 1538 aa18.75■□□□□ 0.59
CPSF7-212ENST00000489728 NUP160Q12769 1436 aa18.72■□□□□ 0.59
CPSF7-212ENST00000489728 CEP170Q5SW79 1584 aa18.67■□□□□ 0.58
CPSF7-212ENST00000489728 EEA1Q15075 1411 aa18.66■□□□□ 0.58
CPSF7-212ENST00000489728 CARMIL1Q5VZK9 1371 aa18.66■□□□□ 0.58
CPSF7-212ENST00000489728 CHIC1Q5VXU3 224 aa18.65■□□□□ 0.58
CPSF7-212ENST00000489728 RUSC2Q8N2Y8 1516 aa18.64■□□□□ 0.58
CPSF7-212ENST00000489728 ARHGEF11O15085 1522 aa18.63■□□□□ 0.57
CPSF7-212ENST00000489728 RIMBP3CA6NJZ7 1639 aa18.61■□□□□ 0.57
CPSF7-212ENST00000489728 RIMBP3BA6NNM3 1639 aa18.61■□□□□ 0.57
CPSF7-212ENST00000489728 RIMBP3Q9UFD9 1639 aa18.61■□□□□ 0.57
CPSF7-212ENST00000489728 RAPGEF2Q9Y4G8 1499 aa18.59■□□□□ 0.57
CPSF7-212ENST00000489728 SHROOM2Q13796 1616 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms