RNA–Protein interactions for RNA: ENST00000489567.5

SSR1-210, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 3 BASIC

Gene SSR1, Length 1,893 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-210ENST00000489567 NISCHQ9Y2I1 1504 aa19.02■□□□□ 0.63
SSR1-210ENST00000489567 CCDC180Q9P1Z9 1646 aa16.83■□□□□ 0.28
SSR1-210ENST00000489567 AEBP2Q6ZN18 517 aaPredicted RBP16.57■□□□□ 0.24
SSR1-210ENST00000489567 ABCC9O60706 1549 aa16.46■□□□□ 0.23
SSR1-210ENST00000489567 CHIC1Q5VXU3 224 aa15.91■□□□□ 0.14
SSR1-210ENST00000489567 DCAF8L2P0C7V8 631 aa15.88■□□□□ 0.13
SSR1-210ENST00000489567 ZCCHC6Q5VYS8 1495 aaKnown RBP15.86■□□□□ 0.13
SSR1-210ENST00000489567 NACADO15069 1562 aa15.82■□□□□ 0.12
SSR1-210ENST00000489567 RB1CC1Q8TDY2 1594 aa15.81■□□□□ 0.12
SSR1-210ENST00000489567 MYO15BQ96JP2 1530 aa15.74■□□□□ 0.11
SSR1-210ENST00000489567 DCAF1Q9Y4B6 1507 aa15.7■□□□□ 0.1
SSR1-210ENST00000489567 UNC13AQ9UPW8 1703 aa15.49■□□□□ 0.07
SSR1-210ENST00000489567 PABPN1Q86U42 306 aaKnown RBP eCLIP15.42■□□□□ 0.06
SSR1-210ENST00000489567 SCRIBQ14160 1630 aa15.41■□□□□ 0.06
SSR1-210ENST00000489567 BICRAQ9NZM4 1560 aa15.39■□□□□ 0.05
SSR1-210ENST00000489567 SHROOM4Q9ULL8 1493 aa15.14■□□□□ 0.01
SSR1-210ENST00000489567 DNAJC5BQ9UF47 199 aa15.1■□□□□ 0.01
SSR1-210ENST00000489567 EIF4G1Q04637 1599 aaKnown RBP14.96□□□□□ -0.02
SSR1-210ENST00000489567 CC2D2AQ9P2K1 1620 aa14.88□□□□□ -0.03
SSR1-210ENST00000489567 CECR2Q9BXF3 1484 aa14.85□□□□□ -0.03
SSR1-210ENST00000489567 SMARCA4P51532 1647 aa14.73□□□□□ -0.05
SSR1-210ENST00000489567 BAZ1AQ9NRL2 1556 aaPredicted RBP14.71□□□□□ -0.05
SSR1-210ENST00000489567 MROH2BQ7Z745 1585 aa14.69□□□□□ -0.06
SSR1-210ENST00000489567 ATAD2BQ9ULI0 1458 aa14.65□□□□□ -0.06
SSR1-210ENST00000489567 NCAPD3P42695 1498 aa14.61□□□□□ -0.07
SSR1-210ENST00000489567 SMARCA2P51531 1590 aa14.59□□□□□ -0.07
SSR1-210ENST00000489567 PEG3Q9GZU2 1588 aa14.58□□□□□ -0.08
SSR1-210ENST00000489567 RSF1Q96T23 1441 aaPredicted RBP14.54□□□□□ -0.08
SSR1-210ENST00000489567 HMGXB3Q12766 1538 aa14.53□□□□□ -0.08
SSR1-210ENST00000489567 WIZO95785 1651 aa14.52□□□□□ -0.08
SSR1-210ENST00000489567 BAZ1BQ9UIG0 1483 aaKnown RBP14.51□□□□□ -0.09
SSR1-210ENST00000489567 TOP2AP11388 1531 aaKnown RBP14.34□□□□□ -0.11
SSR1-210ENST00000489567 NESP48681 1621 aa14.29□□□□□ -0.12
SSR1-210ENST00000489567 SUPT5HO00267 1087 aaKnown RBP14.23□□□□□ -0.13
SSR1-210ENST00000489567 CCDC88BA6NC98 1476 aa14.2□□□□□ -0.14
SSR1-210ENST00000489567 CADPSQ9ULU8 1353 aa14.2□□□□□ -0.14
SSR1-210ENST00000489567 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
SSR1-210ENST00000489567 ERCC6Q03468 1493 aa14.15□□□□□ -0.14
SSR1-210ENST00000489567 CFTRP13569 1480 aa14.13□□□□□ -0.15
SSR1-210ENST00000489567 SENP3Q9H4L4 574 aaPredicted RBP14.13□□□□□ -0.15
SSR1-210ENST00000489567 PDS5BQ9NTI5 1447 aa14.1□□□□□ -0.15
SSR1-210ENST00000489567 KIF21AQ7Z4S6 1674 aa14.08□□□□□ -0.15
SSR1-210ENST00000489567 FANCD2Q9BXW9 1451 aa14.04□□□□□ -0.16
SSR1-210ENST00000489567 THOC2Q8NI27 1593 aaKnown RBP14.02□□□□□ -0.16
SSR1-210ENST00000489567 CEP164Q9UPV0 1460 aa14□□□□□ -0.17
SSR1-210ENST00000489567 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
SSR1-210ENST00000489567 PHF23Q9BUL5 403 aaPredicted RBP13.98□□□□□ -0.17
SSR1-210ENST00000489567 MRC2Q9UBG0 1479 aa13.97□□□□□ -0.17
SSR1-210ENST00000489567 CUX2O14529 1486 aa13.95□□□□□ -0.18
SSR1-210ENST00000489567 WDR62O43379 1518 aa13.92□□□□□ -0.18
SSR1-210ENST00000489567 URB2Q14146 1524 aaKnown RBP13.91□□□□□ -0.18
SSR1-210ENST00000489567 TOPBP1Q92547 1522 aa13.83□□□□□ -0.2
SSR1-210ENST00000489567 DNMBPQ6XZF7 1577 aa13.79□□□□□ -0.2
SSR1-210ENST00000489567 ABCC8Q09428 1581 aa13.77□□□□□ -0.2
SSR1-210ENST00000489567 CUX1P39880 1505 aa13.76□□□□□ -0.21
SSR1-210ENST00000489567 POLA1P09884 1462 aaPredicted RBP13.72□□□□□ -0.21
SSR1-210ENST00000489567 FGD5Q6ZNL6 1462 aa13.7□□□□□ -0.22
SSR1-210ENST00000489567 IFT140Q96RY7 1462 aa13.69□□□□□ -0.22
SSR1-210ENST00000489567 ZNF608Q9ULD9 1512 aaPredicted RBP13.68□□□□□ -0.22
SSR1-210ENST00000489567 WRNQ14191 1432 aaPredicted RBP eCLIP13.68□□□□□ -0.22
SSR1-210ENST00000489567 RAD54L2Q9Y4B4 1467 aa13.68□□□□□ -0.22
SSR1-210ENST00000489567 TARBP1Q13395 1621 aaKnown RBP13.67□□□□□ -0.22
SSR1-210ENST00000489567 SYNJ1O43426 1573 aa13.67□□□□□ -0.22
SSR1-210ENST00000489567 SOGA1O94964 1423 aa13.65□□□□□ -0.22
SSR1-210ENST00000489567 TOP2BQ02880 1626 aa13.64□□□□□ -0.23
SSR1-210ENST00000489567 BIVM-ERCC5R4GMW8 1640 aa13.63□□□□□ -0.23
SSR1-210ENST00000489567 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.237e-15■■■■□ 23.4
SSR1-210ENST00000489567 POTEDQ86YR6 584 aa13.6□□□□□ -0.23
SSR1-210ENST00000489567 EIF4G3O43432 1585 aaKnown RBP13.6□□□□□ -0.23
SSR1-210ENST00000489567 TDRD9Q8NDG6 1382 aaKnown RBP13.59□□□□□ -0.23
SSR1-210ENST00000489567 WDR97A6NE52 1622 aa13.56□□□□□ -0.24
SSR1-210ENST00000489567 ABCA10Q8WWZ4 1543 aa13.55□□□□□ -0.24
SSR1-210ENST00000489567 GAPVD1Q14C86 1478 aa13.5□□□□□ -0.25
SSR1-210ENST00000489567 ABCA5Q8WWZ7 1642 aa13.49□□□□□ -0.25
SSR1-210ENST00000489567 DNAJC5Q9H3Z4 198 aa13.48□□□□□ -0.25
SSR1-210ENST00000489567 GRIN2BQ13224 1484 aa13.47□□□□□ -0.25
SSR1-210ENST00000489567 SNAPC4Q5SXM2 1469 aa13.47□□□□□ -0.25
SSR1-210ENST00000489567 PBRM1Q86U86 1689 aa13.45□□□□□ -0.26
SSR1-210ENST00000489567 MAGI1Q96QZ7 1491 aaPredicted RBP13.42□□□□□ -0.26
SSR1-210ENST00000489567 FBLN2P98095 1184 aa13.41□□□□□ -0.26
SSR1-210ENST00000489567 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
SSR1-210ENST00000489567 TRIM41Q8WV44 630 aa13.41□□□□□ -0.26
SSR1-210ENST00000489567 CHD1O14646 1710 aa13.4□□□□□ -0.26
SSR1-210ENST00000489567 SYNJ2O15056 1496 aa13.38□□□□□ -0.27
SSR1-210ENST00000489567 ERICH3Q5RHP9 1530 aa13.38□□□□□ -0.27
SSR1-210ENST00000489567 KIF27Q86VH2 1401 aa13.37□□□□□ -0.27
SSR1-210ENST00000489567 CHMP7Q8WUX9 453 aaPredicted RBP13.37□□□□□ -0.27
SSR1-210ENST00000489567 ADAMTS12P58397 1594 aa13.35□□□□□ -0.27
SSR1-210ENST00000489567 RUSC2Q8N2Y8 1516 aa13.35□□□□□ -0.27
SSR1-210ENST00000489567 IGF1RP08069 1367 aa13.34□□□□□ -0.27
SSR1-210ENST00000489567 FHAD1B1AJZ9 1412 aa13.33□□□□□ -0.28
SSR1-210ENST00000489567 GRIN2AQ12879 1464 aa13.31□□□□□ -0.28
SSR1-210ENST00000489567 CLASP1Q7Z460 1538 aa13.27□□□□□ -0.29
SSR1-210ENST00000489567 CEP170Q5SW79 1584 aa13.26□□□□□ -0.29
SSR1-210ENST00000489567 CARMIL1Q5VZK9 1371 aa13.25□□□□□ -0.29
SSR1-210ENST00000489567 NUP160Q12769 1436 aa13.25□□□□□ -0.29
SSR1-210ENST00000489567 CUL7Q14999 1698 aa13.25□□□□□ -0.29
SSR1-210ENST00000489567 ARHGEF11O15085 1522 aa13.21□□□□□ -0.3
SSR1-210ENST00000489567 RIMBP3CA6NJZ7 1639 aa13.2□□□□□ -0.3
SSR1-210ENST00000489567 RIMBP3BA6NNM3 1639 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms