RNA–Protein interactions for RNA: ENST00000489451.1

ACTN4-206, Transcript of actinin alpha 4, humanhuman

TSL 3

Gene ACTN4, Length 654 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-206ENST00000489451 NISCHQ9Y2I1 1504 aa29.81■■■□□ 2.36
ACTN4-206ENST00000489451 ABCC9O60706 1549 aa26.82■■□□□ 1.88
ACTN4-206ENST00000489451 CCDC180Q9P1Z9 1646 aa26.75■■□□□ 1.87
ACTN4-206ENST00000489451 DNAJC5BQ9UF47 199 aa25.94■■□□□ 1.74
ACTN4-206ENST00000489451 RB1CC1Q8TDY2 1594 aa25.4■■□□□ 1.66
ACTN4-206ENST00000489451 NACADO15069 1562 aa25.25■■□□□ 1.63
ACTN4-206ENST00000489451 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
ACTN4-206ENST00000489451 UNC13AQ9UPW8 1703 aa24.98■■□□□ 1.59
ACTN4-206ENST00000489451 MYO15BQ96JP2 1530 aa24.92■■□□□ 1.58
ACTN4-206ENST00000489451 PABPN1Q86U42 306 aaKnown RBP eCLIP24.85■■□□□ 1.57
ACTN4-206ENST00000489451 BICRAQ9NZM4 1560 aa24.79■■□□□ 1.56
ACTN4-206ENST00000489451 ZCCHC6Q5VYS8 1495 aaKnown RBP24.73■■□□□ 1.55
ACTN4-206ENST00000489451 DNAJC5Q9H3Z4 198 aa24.63■■□□□ 1.53
ACTN4-206ENST00000489451 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
ACTN4-206ENST00000489451 SCRIBQ14160 1630 aa24.38■■□□□ 1.49
ACTN4-206ENST00000489451 SHROOM4Q9ULL8 1493 aa24.33■■□□□ 1.49
ACTN4-206ENST00000489451 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
ACTN4-206ENST00000489451 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
ACTN4-206ENST00000489451 EIF4G1Q04637 1599 aaKnown RBP24.12■■□□□ 1.45
ACTN4-206ENST00000489451 CUX2O14529 1486 aa23.56■■□□□ 1.36
ACTN4-206ENST00000489451 NCAPD3P42695 1498 aa23.32■■□□□ 1.32
ACTN4-206ENST00000489451 ERCC6Q03468 1493 aa23.29■■□□□ 1.32
ACTN4-206ENST00000489451 SMARCA4P51532 1647 aa23.27■■□□□ 1.32
ACTN4-206ENST00000489451 ATAD2BQ9ULI0 1458 aa23.27■■□□□ 1.32
ACTN4-206ENST00000489451 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
ACTN4-206ENST00000489451 HMGXB3Q12766 1538 aa23.16■■□□□ 1.3
ACTN4-206ENST00000489451 SMARCA2P51531 1590 aa23.15■■□□□ 1.3
ACTN4-206ENST00000489451 BAZ1AQ9NRL2 1556 aaPredicted RBP23.1■■□□□ 1.29
ACTN4-206ENST00000489451 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
ACTN4-206ENST00000489451 NESP48681 1621 aa23■■□□□ 1.27
ACTN4-206ENST00000489451 BAZ1BQ9UIG0 1483 aaKnown RBP23■■□□□ 1.27
ACTN4-206ENST00000489451 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
ACTN4-206ENST00000489451 THOC2Q8NI27 1593 aaKnown RBP22.8■■□□□ 1.24
ACTN4-206ENST00000489451 LAMC3Q9Y6N6 1575 aa22.79■■□□□ 1.24
ACTN4-206ENST00000489451 WIZO95785 1651 aa22.73■■□□□ 1.23
ACTN4-206ENST00000489451 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
ACTN4-206ENST00000489451 CADPSQ9ULU8 1353 aa22.59■■□□□ 1.21
ACTN4-206ENST00000489451 PDS5BQ9NTI5 1447 aa22.58■■□□□ 1.21
ACTN4-206ENST00000489451 RSF1Q96T23 1441 aaPredicted RBP22.5■■□□□ 1.19
ACTN4-206ENST00000489451 MRC2Q9UBG0 1479 aa22.46■■□□□ 1.19
ACTN4-206ENST00000489451 WDR62O43379 1518 aa22.45■■□□□ 1.18
ACTN4-206ENST00000489451 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
ACTN4-206ENST00000489451 CFTRP13569 1480 aa22.37■■□□□ 1.17
ACTN4-206ENST00000489451 CEP164Q9UPV0 1460 aa22.35■■□□□ 1.17
ACTN4-206ENST00000489451 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
ACTN4-206ENST00000489451 URB2Q14146 1524 aaKnown RBP22.22■■□□□ 1.15
ACTN4-206ENST00000489451 OSCARQ8IYS5 282 aa22.22■■□□□ 1.15
ACTN4-206ENST00000489451 RIMBP3CA6NJZ7 1639 aa22.18■■□□□ 1.14
ACTN4-206ENST00000489451 RIMBP3BA6NNM3 1639 aa22.18■■□□□ 1.14
ACTN4-206ENST00000489451 RIMBP3Q9UFD9 1639 aa22.18■■□□□ 1.14
ACTN4-206ENST00000489451 PRDM2Q13029 1718 aa22.17■■□□□ 1.14
ACTN4-206ENST00000489451 CCDC88BA6NC98 1476 aa22.15■■□□□ 1.14
ACTN4-206ENST00000489451 AEBP2Q6ZN18 517 aaPredicted RBP22.13■■□□□ 1.13
ACTN4-206ENST00000489451 ARHGEF11O15085 1522 aa21.96■■□□□ 1.11
ACTN4-206ENST00000489451 TRHP20396 242 aaPredicted RBP21.96■■□□□ 1.11
ACTN4-206ENST00000489451 TOPBP1Q92547 1522 aa21.95■■□□□ 1.1
ACTN4-206ENST00000489451 ZNF608Q9ULD9 1512 aaPredicted RBP21.94■■□□□ 1.1
ACTN4-206ENST00000489451 IFT140Q96RY7 1462 aa21.9■■□□□ 1.1
ACTN4-206ENST00000489451 DNMBPQ6XZF7 1577 aa21.86■■□□□ 1.09
ACTN4-206ENST00000489451 EIF4G3O43432 1585 aaKnown RBP21.82■■□□□ 1.08
ACTN4-206ENST00000489451 ABCC8Q09428 1581 aa21.81■■□□□ 1.08
ACTN4-206ENST00000489451 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
ACTN4-206ENST00000489451 CYB5RLQ6IPT4 315 aa21.79■■□□□ 1.08
ACTN4-206ENST00000489451 POLA1P09884 1462 aaPredicted RBP21.73■■□□□ 1.07
ACTN4-206ENST00000489451 AQRO60306 1485 aaKnown RBP eCLIP21.7■■□□□ 1.064e-10■■■■■ 46.9
ACTN4-206ENST00000489451 CHD1O14646 1710 aa21.66■■□□□ 1.06
ACTN4-206ENST00000489451 ARAP1Q96P48 1450 aa21.65■■□□□ 1.06
ACTN4-206ENST00000489451 RAD54L2Q9Y4B4 1467 aa21.65■■□□□ 1.06
ACTN4-206ENST00000489451 CUX1P39880 1505 aa21.6■■□□□ 1.05
ACTN4-206ENST00000489451 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
ACTN4-206ENST00000489451 SOGA1O94964 1423 aa21.56■■□□□ 1.04
ACTN4-206ENST00000489451 TDRD9Q8NDG6 1382 aaKnown RBP21.55■■□□□ 1.04
ACTN4-206ENST00000489451 WDR97A6NE52 1622 aa21.51■■□□□ 1.03
ACTN4-206ENST00000489451 SNAPC4Q5SXM2 1469 aa21.49■■□□□ 1.03
ACTN4-206ENST00000489451 FBLN2P98095 1184 aa21.43■■□□□ 1.02
ACTN4-206ENST00000489451 CLASP1Q7Z460 1538 aa21.42■■□□□ 1.02
ACTN4-206ENST00000489451 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.02
ACTN4-206ENST00000489451 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.01
ACTN4-206ENST00000489451 GRIN2BQ13224 1484 aa21.39■■□□□ 1.01
ACTN4-206ENST00000489451 PBRM1Q86U86 1689 aa21.38■■□□□ 1.01
ACTN4-206ENST00000489451 ABCA5Q8WWZ7 1642 aa21.35■■□□□ 1.01
ACTN4-206ENST00000489451 ABCA10Q8WWZ4 1543 aa21.34■■□□□ 1.01
ACTN4-206ENST00000489451 SYNJ2O15056 1496 aa21.32■■□□□ 1
ACTN4-206ENST00000489451 GAPVD1Q14C86 1478 aa21.32■■□□□ 1
ACTN4-206ENST00000489451 SYNJ1O43426 1573 aa21.31■■□□□ 1
ACTN4-206ENST00000489451 CHMP7Q8WUX9 453 aaPredicted RBP21.29■■□□□ 1
ACTN4-206ENST00000489451 ILDR1Q86SU0 546 aaPredicted RBP21.28■■□□□ 1
ACTN4-206ENST00000489451 BIVM-ERCC5R4GMW8 1640 aa21.26■□□□□ 0.99
ACTN4-206ENST00000489451 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
ACTN4-206ENST00000489451 WRNQ14191 1432 aaPredicted RBP eCLIP21.19■□□□□ 0.98
ACTN4-206ENST00000489451 ADAMTS12P58397 1594 aa21.18■□□□□ 0.98
ACTN4-206ENST00000489451 GRIN2AQ12879 1464 aa21.15■□□□□ 0.98
ACTN4-206ENST00000489451 CEP170Q5SW79 1584 aa21.12■□□□□ 0.97
ACTN4-206ENST00000489451 ERCC6L2Q5T890 1561 aa21.12■□□□□ 0.97
ACTN4-206ENST00000489451 NUP160Q12769 1436 aa21.11■□□□□ 0.97
ACTN4-206ENST00000489451 ERICH3Q5RHP9 1530 aa21.05■□□□□ 0.96
ACTN4-206ENST00000489451 FHAD1B1AJZ9 1412 aa21.04■□□□□ 0.96
ACTN4-206ENST00000489451 SHROOM2Q13796 1616 aa21.04■□□□□ 0.96
ACTN4-206ENST00000489451 KIF13AQ9H1H9 1805 aa20.92■□□□□ 0.94
ACTN4-206ENST00000489451 RUSC2Q8N2Y8 1516 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms