RNA–Protein interactions for RNA: ENST00000489414.5

EXOSC3-206, Transcript of exosome component 3, humanhuman

TSL 4

Gene EXOSC3, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-206ENST00000489414 AEBP2Q6ZN18 517 aaPredicted RBP20.75■□□□□ 0.91
EXOSC3-206ENST00000489414 DNAJC5BQ9UF47 199 aa20.69■□□□□ 0.9
EXOSC3-206ENST00000489414 NISCHQ9Y2I1 1504 aa20.66■□□□□ 0.9
EXOSC3-206ENST00000489414 ABCC9O60706 1549 aa20.61■□□□□ 0.89
EXOSC3-206ENST00000489414 DNAJC5Q9H3Z4 198 aa20.09■□□□□ 0.81
EXOSC3-206ENST00000489414 CHIC1Q5VXU3 224 aa19.36■□□□□ 0.69
EXOSC3-206ENST00000489414 CCDC180Q9P1Z9 1646 aa19.23■□□□□ 0.67
EXOSC3-206ENST00000489414 RB1CC1Q8TDY2 1594 aa18.99■□□□□ 0.63
EXOSC3-206ENST00000489414 PABPN1Q86U42 306 aaKnown RBP eCLIP18.9■□□□□ 0.62
EXOSC3-206ENST00000489414 CECR2Q9BXF3 1484 aa18.74■□□□□ 0.59
EXOSC3-206ENST00000489414 UNC13AQ9UPW8 1703 aa18.61■□□□□ 0.57
EXOSC3-206ENST00000489414 CC2D2AQ9P2K1 1620 aa18.59■□□□□ 0.57
EXOSC3-206ENST00000489414 BICRAQ9NZM4 1560 aa18.55■□□□□ 0.56
EXOSC3-206ENST00000489414 NACADO15069 1562 aa18.51■□□□□ 0.55
EXOSC3-206ENST00000489414 TRIM41Q8WV44 630 aa18.5■□□□□ 0.55
EXOSC3-206ENST00000489414 CUX2O14529 1486 aa18.43■□□□□ 0.54
EXOSC3-206ENST00000489414 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
EXOSC3-206ENST00000489414 SHROOM4Q9ULL8 1493 aa18.14■□□□□ 0.5
EXOSC3-206ENST00000489414 DCAF8L2P0C7V8 631 aa17.91■□□□□ 0.46
EXOSC3-206ENST00000489414 ERCC6Q03468 1493 aa17.88■□□□□ 0.45
EXOSC3-206ENST00000489414 MYO15BQ96JP2 1530 aa17.8■□□□□ 0.44
EXOSC3-206ENST00000489414 SENP3Q9H4L4 574 aaPredicted RBP17.73■□□□□ 0.43
EXOSC3-206ENST00000489414 THOC2Q8NI27 1593 aaKnown RBP17.49■□□□□ 0.39
EXOSC3-206ENST00000489414 PHF23Q9BUL5 403 aaPredicted RBP17.46■□□□□ 0.39
EXOSC3-206ENST00000489414 ILDR1Q86SU0 546 aaPredicted RBP17.43■□□□□ 0.38
EXOSC3-206ENST00000489414 SCRIBQ14160 1630 aa17.42■□□□□ 0.38
EXOSC3-206ENST00000489414 NESP48681 1621 aa17.3■□□□□ 0.36
EXOSC3-206ENST00000489414 BAZ1AQ9NRL2 1556 aaPredicted RBP17.28■□□□□ 0.36
EXOSC3-206ENST00000489414 RIMBP3CA6NJZ7 1639 aa17.27■□□□□ 0.36
EXOSC3-206ENST00000489414 RIMBP3BA6NNM3 1639 aa17.27■□□□□ 0.36
EXOSC3-206ENST00000489414 RIMBP3Q9UFD9 1639 aa17.27■□□□□ 0.36
EXOSC3-206ENST00000489414 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
EXOSC3-206ENST00000489414 TRHP20396 242 aaPredicted RBP17.19■□□□□ 0.34
EXOSC3-206ENST00000489414 SMARCA2P51531 1590 aa17.15■□□□□ 0.34
EXOSC3-206ENST00000489414 NCAPD3P42695 1498 aa17.11■□□□□ 0.33
EXOSC3-206ENST00000489414 ARHGEF11O15085 1522 aa17.06■□□□□ 0.32
EXOSC3-206ENST00000489414 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
EXOSC3-206ENST00000489414 DCAF1Q9Y4B6 1507 aa17.01■□□□□ 0.31
EXOSC3-206ENST00000489414 LAMC3Q9Y6N6 1575 aa16.96■□□□□ 0.31
EXOSC3-206ENST00000489414 CYB5RLQ6IPT4 315 aa16.93■□□□□ 0.3
EXOSC3-206ENST00000489414 WDR62O43379 1518 aa16.89■□□□□ 0.29
EXOSC3-206ENST00000489414 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
EXOSC3-206ENST00000489414 HMGXB3Q12766 1538 aa16.86■□□□□ 0.29
EXOSC3-206ENST00000489414 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
EXOSC3-206ENST00000489414 ATAD2BQ9ULI0 1458 aa16.84■□□□□ 0.29
EXOSC3-206ENST00000489414 ZCCHC6Q5VYS8 1495 aaKnown RBP16.82■□□□□ 0.28
EXOSC3-206ENST00000489414 ARAP1Q96P48 1450 aa16.8■□□□□ 0.28
EXOSC3-206ENST00000489414 FOXD1Q16676 465 aa16.58■□□□□ 0.24
EXOSC3-206ENST00000489414 BAZ1BQ9UIG0 1483 aaKnown RBP16.56■□□□□ 0.24
EXOSC3-206ENST00000489414 RSF1Q96T23 1441 aaPredicted RBP16.5■□□□□ 0.23
EXOSC3-206ENST00000489414 CADPSQ9ULU8 1353 aa16.49■□□□□ 0.23
EXOSC3-206ENST00000489414 LMTK3Q96Q04 1460 aa16.46■□□□□ 0.23
EXOSC3-206ENST00000489414 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
EXOSC3-206ENST00000489414 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
EXOSC3-206ENST00000489414 KDM4FA0A1W2PPD8 638 aa16.44■□□□□ 0.22
EXOSC3-206ENST00000489414 FBXO41Q8TF61 875 aa16.41■□□□□ 0.22
EXOSC3-206ENST00000489414 SOCS7O14512 581 aa16.4■□□□□ 0.22
EXOSC3-206ENST00000489414 ERCC6L2Q5T890 1561 aa16.39■□□□□ 0.21
EXOSC3-206ENST00000489414 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
EXOSC3-206ENST00000489414 CHD1O14646 1710 aa16.33■□□□□ 0.21
EXOSC3-206ENST00000489414 ZNF608Q9ULD9 1512 aaPredicted RBP16.33■□□□□ 0.2
EXOSC3-206ENST00000489414 FANCD2Q9BXW9 1451 aa16.3■□□□□ 0.2
EXOSC3-206ENST00000489414 URB2Q14146 1524 aaKnown RBP16.29■□□□□ 0.2
EXOSC3-206ENST00000489414 HECW2Q9P2P5 1572 aa16.25■□□□□ 0.19
EXOSC3-206ENST00000489414 ILDR2Q71H61 639 aa16.24■□□□□ 0.19
EXOSC3-206ENST00000489414 IFT140Q96RY7 1462 aa16.19■□□□□ 0.18
EXOSC3-206ENST00000489414 EIF4G3O43432 1585 aaKnown RBP16.18■□□□□ 0.18
EXOSC3-206ENST00000489414 CLASP1Q7Z460 1538 aa16.14■□□□□ 0.17
EXOSC3-206ENST00000489414 KIF13AQ9H1H9 1805 aa16.12■□□□□ 0.17
EXOSC3-206ENST00000489414 FBLN2P98095 1184 aa16.06■□□□□ 0.16
EXOSC3-206ENST00000489414 GAPVD1Q14C86 1478 aa16.04■□□□□ 0.16
EXOSC3-206ENST00000489414 CFTRP13569 1480 aa16.02■□□□□ 0.15
EXOSC3-206ENST00000489414 SYNJ2O15056 1496 aa16.01■□□□□ 0.15
EXOSC3-206ENST00000489414 DISP3Q9P2K9 1392 aa16■□□□□ 0.15
EXOSC3-206ENST00000489414 AQRO60306 1485 aaKnown RBP eCLIP15.96■□□□□ 0.142e-6■■■□□ 15.2
EXOSC3-206ENST00000489414 ADGRL1O94910 1474 aa15.96■□□□□ 0.14
EXOSC3-206ENST00000489414 KDM6BO15054 1643 aa15.94■□□□□ 0.14
EXOSC3-206ENST00000489414 SYNJ1O43426 1573 aa15.94■□□□□ 0.14
EXOSC3-206ENST00000489414 MROH2BQ7Z745 1585 aa15.89■□□□□ 0.13
EXOSC3-206ENST00000489414 TARBP1Q13395 1621 aaKnown RBP15.85■□□□□ 0.13
EXOSC3-206ENST00000489414 TOPBP1Q92547 1522 aa15.84■□□□□ 0.13
EXOSC3-206ENST00000489414 POTEDQ86YR6 584 aa15.84■□□□□ 0.13
EXOSC3-206ENST00000489414 ABCC10Q5T3U5 1492 aa15.78■□□□□ 0.12
EXOSC3-206ENST00000489414 SPATA31D1Q6ZQQ2 1576 aa15.77■□□□□ 0.11
EXOSC3-206ENST00000489414 SNAPC4Q5SXM2 1469 aa15.77■□□□□ 0.11
EXOSC3-206ENST00000489414 FAM69CQ0P6D2 419 aa15.76■□□□□ 0.11
EXOSC3-206ENST00000489414 PRDM2Q13029 1718 aa15.76■□□□□ 0.11
EXOSC3-206ENST00000489414 CHMP7Q8WUX9 453 aaPredicted RBP15.73■□□□□ 0.11
EXOSC3-206ENST00000489414 DIP2BQ9P265 1576 aa15.72■□□□□ 0.11
EXOSC3-206ENST00000489414 ABCC8Q09428 1581 aa15.68■□□□□ 0.1
EXOSC3-206ENST00000489414 MAGI1Q96QZ7 1491 aaPredicted RBP15.68■□□□□ 0.1
EXOSC3-206ENST00000489414 DNMBPQ6XZF7 1577 aa15.66■□□□□ 0.1
EXOSC3-206ENST00000489414 TSPOAP1O95153 1857 aa15.64■□□□□ 0.09
EXOSC3-206ENST00000489414 WIZO95785 1651 aa15.63■□□□□ 0.09
EXOSC3-206ENST00000489414 MAPKBP1O60336 1514 aa15.63■□□□□ 0.09
EXOSC3-206ENST00000489414 MSH5O43196 834 aa15.62■□□□□ 0.09
EXOSC3-206ENST00000489414 TDRD9Q8NDG6 1382 aaKnown RBP15.6■□□□□ 0.09
EXOSC3-206ENST00000489414 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
EXOSC3-206ENST00000489414 WDR97A6NE52 1622 aa15.58■□□□□ 0.09
EXOSC3-206ENST00000489414 CEP170Q5SW79 1584 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms