RNA–Protein interactions for RNA: ENST00000488767.1

PHF1-210, Transcript of PHD finger protein 1, humanhuman

TSL 3

Gene PHF1, Length 849 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-210ENST00000488767 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
PHF1-210ENST00000488767 CCDC180Q9P1Z9 1646 aa27.66■■■□□ 2.02
PHF1-210ENST00000488767 ABCC9O60706 1549 aa27.06■■□□□ 1.92
PHF1-210ENST00000488767 RB1CC1Q8TDY2 1594 aa26.07■■□□□ 1.76
PHF1-210ENST00000488767 DCAF8L2P0C7V8 631 aa26.07■■□□□ 1.76
PHF1-210ENST00000488767 NACADO15069 1562 aa26.03■■□□□ 1.76
PHF1-210ENST00000488767 ZCCHC6Q5VYS8 1495 aaKnown RBP25.89■■□□□ 1.73
PHF1-210ENST00000488767 MYO15BQ96JP2 1530 aa25.86■■□□□ 1.73
PHF1-210ENST00000488767 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
PHF1-210ENST00000488767 UNC13AQ9UPW8 1703 aa25.34■■□□□ 1.65
PHF1-210ENST00000488767 PABPN1Q86U42 306 aaKnown RBP eCLIP25.28■■□□□ 1.64
PHF1-210ENST00000488767 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
PHF1-210ENST00000488767 BICRAQ9NZM4 1560 aa25.16■■□□□ 1.62
PHF1-210ENST00000488767 SHROOM4Q9ULL8 1493 aa25.05■■□□□ 1.6
PHF1-210ENST00000488767 DNAJC5BQ9UF47 199 aa24.73■■□□□ 1.55
PHF1-210ENST00000488767 EIF4G1Q04637 1599 aaKnown RBP24.57■■□□□ 1.52
PHF1-210ENST00000488767 CC2D2AQ9P2K1 1620 aa24.46■■□□□ 1.51
PHF1-210ENST00000488767 CECR2Q9BXF3 1484 aa24.34■■□□□ 1.49
PHF1-210ENST00000488767 BAZ1AQ9NRL2 1556 aaPredicted RBP24.14■■□□□ 1.45
PHF1-210ENST00000488767 SMARCA4P51532 1647 aa24.12■■□□□ 1.45
PHF1-210ENST00000488767 SMARCA2P51531 1590 aa24.03■■□□□ 1.44
PHF1-210ENST00000488767 NCAPD3P42695 1498 aa23.99■■□□□ 1.43
PHF1-210ENST00000488767 ATAD2BQ9ULI0 1458 aa23.99■■□□□ 1.43
PHF1-210ENST00000488767 MROH2BQ7Z745 1585 aa23.92■■□□□ 1.42
PHF1-210ENST00000488767 HMGXB3Q12766 1538 aa23.89■■□□□ 1.41
PHF1-210ENST00000488767 PEG3Q9GZU2 1588 aa23.87■■□□□ 1.41
PHF1-210ENST00000488767 BAZ1BQ9UIG0 1483 aaKnown RBP23.85■■□□□ 1.41
PHF1-210ENST00000488767 RSF1Q96T23 1441 aaPredicted RBP23.67■■□□□ 1.38
PHF1-210ENST00000488767 WIZO95785 1651 aa23.66■■□□□ 1.38
PHF1-210ENST00000488767 TOP2AP11388 1531 aaKnown RBP23.47■■□□□ 1.35
PHF1-210ENST00000488767 ERCC6Q03468 1493 aa23.43■■□□□ 1.34
PHF1-210ENST00000488767 LAMC3Q9Y6N6 1575 aa23.39■■□□□ 1.33
PHF1-210ENST00000488767 NESP48681 1621 aa23.37■■□□□ 1.33
PHF1-210ENST00000488767 CADPSQ9ULU8 1353 aa23.31■■□□□ 1.32
PHF1-210ENST00000488767 PDS5BQ9NTI5 1447 aa23.28■■□□□ 1.32
PHF1-210ENST00000488767 CCDC88BA6NC98 1476 aa23.16■■□□□ 1.3
PHF1-210ENST00000488767 CFTRP13569 1480 aa23.15■■□□□ 1.3
PHF1-210ENST00000488767 SUPT5HO00267 1087 aaKnown RBP23.14■■□□□ 1.29
PHF1-210ENST00000488767 CUX2O14529 1486 aa23.13■■□□□ 1.29
PHF1-210ENST00000488767 KIF21AQ7Z4S6 1674 aa23.09■■□□□ 1.29
PHF1-210ENST00000488767 CEP164Q9UPV0 1460 aa23.05■■□□□ 1.28
PHF1-210ENST00000488767 FANCD2Q9BXW9 1451 aa23.05■■□□□ 1.28
PHF1-210ENST00000488767 THOC2Q8NI27 1593 aaKnown RBP23.02■■□□□ 1.28
PHF1-210ENST00000488767 MRC2Q9UBG0 1479 aa23■■□□□ 1.27
PHF1-210ENST00000488767 PRDM2Q13029 1718 aa22.95■■□□□ 1.26
PHF1-210ENST00000488767 WDR62O43379 1518 aa22.88■■□□□ 1.25
PHF1-210ENST00000488767 URB2Q14146 1524 aaKnown RBP22.77■■□□□ 1.24
PHF1-210ENST00000488767 ABCC8Q09428 1581 aa22.73■■□□□ 1.23
PHF1-210ENST00000488767 TOPBP1Q92547 1522 aa22.65■■□□□ 1.22
PHF1-210ENST00000488767 DNMBPQ6XZF7 1577 aa22.64■■□□□ 1.22
PHF1-210ENST00000488767 IFT140Q96RY7 1462 aa22.56■■□□□ 1.2
PHF1-210ENST00000488767 POLA1P09884 1462 aaPredicted RBP22.46■■□□□ 1.19
PHF1-210ENST00000488767 CUX1P39880 1505 aa22.45■■□□□ 1.18
PHF1-210ENST00000488767 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
PHF1-210ENST00000488767 SOGA1O94964 1423 aa22.4■■□□□ 1.18
PHF1-210ENST00000488767 DNAJC5Q9H3Z4 198 aa22.39■■□□□ 1.17
PHF1-210ENST00000488767 ZNF608Q9ULD9 1512 aaPredicted RBP22.38■■□□□ 1.17
PHF1-210ENST00000488767 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
PHF1-210ENST00000488767 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
PHF1-210ENST00000488767 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
PHF1-210ENST00000488767 EIF4G3O43432 1585 aaKnown RBP22.33■■□□□ 1.16
PHF1-210ENST00000488767 WDR97A6NE52 1622 aa22.29■■□□□ 1.16
PHF1-210ENST00000488767 TOP2BQ02880 1626 aa22.29■■□□□ 1.16
PHF1-210ENST00000488767 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.168e-17■■■□□ 17.4
PHF1-210ENST00000488767 BIVM-ERCC5R4GMW8 1640 aa22.27■■□□□ 1.16
PHF1-210ENST00000488767 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
PHF1-210ENST00000488767 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
PHF1-210ENST00000488767 OSCARQ8IYS5 282 aa22.2■■□□□ 1.14
PHF1-210ENST00000488767 ABCA10Q8WWZ4 1543 aa22.2■■□□□ 1.14
PHF1-210ENST00000488767 GRIN2BQ13224 1484 aa22.15■■□□□ 1.14
PHF1-210ENST00000488767 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
PHF1-210ENST00000488767 FBLN2P98095 1184 aa22.11■■□□□ 1.13
PHF1-210ENST00000488767 SNAPC4Q5SXM2 1469 aa22.1■■□□□ 1.13
PHF1-210ENST00000488767 MAGI1Q96QZ7 1491 aaPredicted RBP22.1■■□□□ 1.13
PHF1-210ENST00000488767 ABCA5Q8WWZ7 1642 aa22.09■■□□□ 1.13
PHF1-210ENST00000488767 PBRM1Q86U86 1689 aa22.06■■□□□ 1.12
PHF1-210ENST00000488767 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
PHF1-210ENST00000488767 CHD1O14646 1710 aa22.02■■□□□ 1.12
PHF1-210ENST00000488767 SYNJ2O15056 1496 aa22.01■■□□□ 1.11
PHF1-210ENST00000488767 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
PHF1-210ENST00000488767 KIF27Q86VH2 1401 aa21.94■■□□□ 1.1
PHF1-210ENST00000488767 FHAD1B1AJZ9 1412 aa21.9■■□□□ 1.1
PHF1-210ENST00000488767 TRIM41Q8WV44 630 aa21.89■■□□□ 1.09
PHF1-210ENST00000488767 ADAMTS12P58397 1594 aa21.89■■□□□ 1.09
PHF1-210ENST00000488767 GRIN2AQ12879 1464 aa21.85■■□□□ 1.09
PHF1-210ENST00000488767 CLASP1Q7Z460 1538 aa21.78■■□□□ 1.08
PHF1-210ENST00000488767 IGF1RP08069 1367 aa21.77■■□□□ 1.08
PHF1-210ENST00000488767 ARHGEF11O15085 1522 aa21.77■■□□□ 1.08
PHF1-210ENST00000488767 CUL7Q14999 1698 aa21.77■■□□□ 1.08
PHF1-210ENST00000488767 RIMBP3CA6NJZ7 1639 aa21.76■■□□□ 1.07
PHF1-210ENST00000488767 RIMBP3BA6NNM3 1639 aa21.76■■□□□ 1.07
PHF1-210ENST00000488767 RIMBP3Q9UFD9 1639 aa21.76■■□□□ 1.07
PHF1-210ENST00000488767 NUP160Q12769 1436 aa21.72■■□□□ 1.07
PHF1-210ENST00000488767 CEP170Q5SW79 1584 aa21.7■■□□□ 1.06
PHF1-210ENST00000488767 CARMIL1Q5VZK9 1371 aa21.69■■□□□ 1.06
PHF1-210ENST00000488767 CYB5RLQ6IPT4 315 aa21.61■■□□□ 1.05
PHF1-210ENST00000488767 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
PHF1-210ENST00000488767 ARAP1Q96P48 1450 aa21.58■■□□□ 1.04
PHF1-210ENST00000488767 RAPGEF2Q9Y4G8 1499 aa21.57■■□□□ 1.04
PHF1-210ENST00000488767 KIAA0586Q9BVV6 1533 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms