RNA–Protein interactions for RNA: ENST00000488687.5

PSME4-209, Transcript of proteasome activator subunit 4, humanhuman

TSL 2

Gene PSME4, Length 3,073 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSME4-209ENST00000488687 CHIC1Q5VXU3 224 aa14.28□□□□□ -0.12
PSME4-209ENST00000488687 AEBP2Q6ZN18 517 aaPredicted RBP14.23□□□□□ -0.13
PSME4-209ENST00000488687 NISCHQ9Y2I1 1504 aa13.45□□□□□ -0.26
PSME4-209ENST00000488687 PHF23Q9BUL5 403 aaPredicted RBP12.78□□□□□ -0.36
PSME4-209ENST00000488687 PLPPR3Q6T4P5 718 aa11.74□□□□□ -0.53
PSME4-209ENST00000488687 SENP3Q9H4L4 574 aaPredicted RBP11.71□□□□□ -0.53
PSME4-209ENST00000488687 CCDC180Q9P1Z9 1646 aa11.66□□□□□ -0.54
PSME4-209ENST00000488687 ABCC9O60706 1549 aa11.61□□□□□ -0.55
PSME4-209ENST00000488687 DNAJC5Q9H3Z4 198 aa11.51□□□□□ -0.57
PSME4-209ENST00000488687 SHROOM4Q9ULL8 1493 aa11.42□□□□□ -0.58
PSME4-209ENST00000488687 ZCCHC6Q5VYS8 1495 aaKnown RBP11.31□□□□□ -0.6
PSME4-209ENST00000488687 DCAF8L2P0C7V8 631 aa11.25□□□□□ -0.61
PSME4-209ENST00000488687 ADRA2BP18089 450 aa11.24□□□□□ -0.61
PSME4-209ENST00000488687 MYO15BQ96JP2 1530 aa11.16□□□□□ -0.62
PSME4-209ENST00000488687 PPP6R1Q9UPN7 881 aa11.11□□□□□ -0.63
PSME4-209ENST00000488687 DCAF1Q9Y4B6 1507 aa11.08□□□□□ -0.64
PSME4-209ENST00000488687 RB1CC1Q8TDY2 1594 aa11□□□□□ -0.65
PSME4-209ENST00000488687 KCNA4P22459 653 aa10.99□□□□□ -0.65
PSME4-209ENST00000488687 FOXD1Q16676 465 aa10.98□□□□□ -0.65
PSME4-209ENST00000488687 DNAJC5BQ9UF47 199 aa10.95□□□□□ -0.66
PSME4-209ENST00000488687 NACADO15069 1562 aa10.89□□□□□ -0.67
PSME4-209ENST00000488687 EHMT2Q96KQ7 1210 aa10.86□□□□□ -0.67
PSME4-209ENST00000488687 SUPT5HO00267 1087 aaKnown RBP10.85□□□□□ -0.67
PSME4-209ENST00000488687 UNC13AQ9UPW8 1703 aa10.84□□□□□ -0.67
PSME4-209ENST00000488687 SCRIBQ14160 1630 aa10.8□□□□□ -0.68
PSME4-209ENST00000488687 PABPN1Q86U42 306 aaKnown RBP eCLIP10.76□□□□□ -0.69
PSME4-209ENST00000488687 BICRAQ9NZM4 1560 aa10.71□□□□□ -0.7
PSME4-209ENST00000488687 CUX2O14529 1486 aa10.56□□□□□ -0.72
PSME4-209ENST00000488687 CSRNP3Q8WYN3 585 aa10.55□□□□□ -0.72
PSME4-209ENST00000488687 CC2D2AQ9P2K1 1620 aa10.5□□□□□ -0.73
PSME4-209ENST00000488687 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
PSME4-209ENST00000488687 PPP4R3CPQ6ZMV5 832 aa10.49□□□□□ -0.73
PSME4-209ENST00000488687 CECR2Q9BXF3 1484 aa10.46□□□□□ -0.73
PSME4-209ENST00000488687 EIF4G1Q04637 1599 aaKnown RBP10.45□□□□□ -0.74
PSME4-209ENST00000488687 SLC4A1APQ9BWU0 796 aaKnown RBP10.42□□□□□ -0.74
PSME4-209ENST00000488687 MROH2BQ7Z745 1585 aa10.41□□□□□ -0.74
PSME4-209ENST00000488687 BAZ1AQ9NRL2 1556 aaPredicted RBP10.39□□□□□ -0.75
PSME4-209ENST00000488687 PIAS4Q8N2W9 510 aaPredicted RBP10.38□□□□□ -0.75
PSME4-209ENST00000488687 WIZO95785 1651 aa10.35□□□□□ -0.75
PSME4-209ENST00000488687 SMARCA4P51532 1647 aa10.32□□□□□ -0.76
PSME4-209ENST00000488687 NPM3O75607 178 aaKnown RBP10.29□□□□□ -0.76
PSME4-209ENST00000488687 ZBTB22O15209 634 aa10.24□□□□□ -0.77
PSME4-209ENST00000488687 TOP2AP11388 1531 aaKnown RBP10.22□□□□□ -0.77
PSME4-209ENST00000488687 NCBP3Q53F19 620 aaKnown RBP10.18□□□□□ -0.78
PSME4-209ENST00000488687 TRIM41Q8WV44 630 aa10.18□□□□□ -0.78
PSME4-209ENST00000488687 PEG3Q9GZU2 1588 aa10.14□□□□□ -0.79
PSME4-209ENST00000488687 CCDC88BA6NC98 1476 aa10.14□□□□□ -0.79
PSME4-209ENST00000488687 SMARCA2P51531 1590 aa10.13□□□□□ -0.79
PSME4-209ENST00000488687 ATAD2BQ9ULI0 1458 aa10.12□□□□□ -0.79
PSME4-209ENST00000488687 BAZ1BQ9UIG0 1483 aaKnown RBP10.11□□□□□ -0.79
PSME4-209ENST00000488687 LOC105371045A0A1W2PR82 267 aa10.03□□□□□ -0.8
PSME4-209ENST00000488687 NCAPD3P42695 1498 aa10.03□□□□□ -0.8
PSME4-209ENST00000488687 ERCC6Q03468 1493 aa10.03□□□□□ -0.8
PSME4-209ENST00000488687 FAM9AQ8IZU1 332 aaPredicted RBP10.03□□□□□ -0.8
PSME4-209ENST00000488687 CNKSR2Q8WXI2 1034 aa10.01□□□□□ -0.81
PSME4-209ENST00000488687 ABCC8Q09428 1581 aa9.99□□□□□ -0.81
PSME4-209ENST00000488687 HMGXB3Q12766 1538 aa9.99□□□□□ -0.81
PSME4-209ENST00000488687 NESP48681 1621 aa9.96□□□□□ -0.82
PSME4-209ENST00000488687 MAPK8IP2Q13387 824 aaPredicted RBP9.91□□□□□ -0.82
PSME4-209ENST00000488687 WRNQ14191 1432 aaPredicted RBP eCLIP9.91□□□□□ -0.82
PSME4-209ENST00000488687 THOC2Q8NI27 1593 aaKnown RBP9.91□□□□□ -0.82
PSME4-209ENST00000488687 KIF21AQ7Z4S6 1674 aa9.87□□□□□ -0.83
PSME4-209ENST00000488687 LAMC3Q9Y6N6 1575 aa9.85□□□□□ -0.83
PSME4-209ENST00000488687 WDR97A6NE52 1622 aa9.85□□□□□ -0.83
PSME4-209ENST00000488687 SYNJ1O43426 1573 aa9.83□□□□□ -0.84
PSME4-209ENST00000488687 ERCC6L2Q5T890 1561 aa9.83□□□□□ -0.84
PSME4-209ENST00000488687 SOGA1O94964 1423 aa9.83□□□□□ -0.84
PSME4-209ENST00000488687 CFTRP13569 1480 aa9.82□□□□□ -0.84
PSME4-209ENST00000488687 EEA1Q15075 1411 aa9.82□□□□□ -0.84
PSME4-209ENST00000488687 FOXD4L1Q9NU39 408 aa9.81□□□□□ -0.84
PSME4-209ENST00000488687 SCAF1Q9H7N4 1312 aaKnown RBP9.8□□□□□ -0.84
PSME4-209ENST00000488687 CADPSQ9ULU8 1353 aa9.78□□□□□ -0.84
PSME4-209ENST00000488687 SLC24A1O60721 1099 aa9.78□□□□□ -0.84
PSME4-209ENST00000488687 TOP2BQ02880 1626 aa9.78□□□□□ -0.84
PSME4-209ENST00000488687 RUSC2Q8N2Y8 1516 aa9.78□□□□□ -0.84
PSME4-209ENST00000488687 PRDM2Q13029 1718 aa9.77□□□□□ -0.85
PSME4-209ENST00000488687 PDS5BQ9NTI5 1447 aa9.76□□□□□ -0.85
PSME4-209ENST00000488687 BIVM-ERCC5R4GMW8 1640 aa9.75□□□□□ -0.85
PSME4-209ENST00000488687 UBTFP17480 764 aaKnown RBP9.75□□□□□ -0.85
PSME4-209ENST00000488687 PCGF6Q9BYE7 350 aa9.74□□□□□ -0.85
PSME4-209ENST00000488687 PELP1Q8IZL8 1130 aaKnown RBP9.73□□□□□ -0.85
PSME4-209ENST00000488687 CUX1P39880 1505 aa9.72□□□□□ -0.85
PSME4-209ENST00000488687 MRC2Q9UBG0 1479 aa9.72□□□□□ -0.85
PSME4-209ENST00000488687 WDR62O43379 1518 aa9.72□□□□□ -0.85
PSME4-209ENST00000488687 GOLGA3Q08378 1498 aa9.71□□□□□ -0.86
PSME4-209ENST00000488687 CEP164Q9UPV0 1460 aa9.69□□□□□ -0.86
PSME4-209ENST00000488687 RNF216Q9NWF9 866 aaPredicted RBP9.69□□□□□ -0.86
PSME4-209ENST00000488687 TNIKQ9UKE5 1360 aa9.69□□□□□ -0.86
PSME4-209ENST00000488687 MYT1Q01538 1121 aa9.69□□□□□ -0.86
PSME4-209ENST00000488687 FANCD2Q9BXW9 1451 aa9.68□□□□□ -0.86
PSME4-209ENST00000488687 MSH5O43196 834 aa9.68□□□□□ -0.86
PSME4-209ENST00000488687 TRIM26Q12899 539 aaPredicted RBP9.67□□□□□ -0.86
PSME4-209ENST00000488687 CEP162Q5TB80 1403 aa9.66□□□□□ -0.86
PSME4-209ENST00000488687 KIF21BO75037 1637 aa9.66□□□□□ -0.86
PSME4-209ENST00000488687 KIF27Q86VH2 1401 aa9.65□□□□□ -0.86
PSME4-209ENST00000488687 RTN4Q9NQC3 1192 aaKnown RBP9.65□□□□□ -0.86
PSME4-209ENST00000488687 SLC4A2P04920 1241 aa9.65□□□□□ -0.86
PSME4-209ENST00000488687 FGD5Q6ZNL6 1462 aa9.62□□□□□ -0.87
PSME4-209ENST00000488687 RAPGEF2Q9Y4G8 1499 aa9.62□□□□□ -0.87
PSME4-209ENST00000488687 PPARGC1BQ86YN6 1023 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms