RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 NISCHQ9Y2I1 1504 aa43.81■■■■■ 4.6
ITGB1-215ENST00000488494 CCDC180Q9P1Z9 1646 aa39.15■■■■□ 3.86
ITGB1-215ENST00000488494 ABCC9O60706 1549 aa38.6■■■■□ 3.77
ITGB1-215ENST00000488494 RB1CC1Q8TDY2 1594 aa36.99■■■■□ 3.51
ITGB1-215ENST00000488494 NACADO15069 1562 aa36.83■■■■□ 3.49
ITGB1-215ENST00000488494 DCAF8L2P0C7V8 631 aa36.65■■■■□ 3.46
ITGB1-215ENST00000488494 MYO15BQ96JP2 1530 aa36.49■■■■□ 3.43
ITGB1-215ENST00000488494 ZCCHC6Q5VYS8 1495 aaKnown RBP36.47■■■■□ 3.43
ITGB1-215ENST00000488494 DCAF1Q9Y4B6 1507 aa36.23■■■■□ 3.39
ITGB1-215ENST00000488494 UNC13AQ9UPW8 1703 aa36.17■■■■□ 3.38
ITGB1-215ENST00000488494 PABPN1Q86U42 306 aaKnown RBP eCLIP35.95■■■■□ 3.35
ITGB1-215ENST00000488494 BICRAQ9NZM4 1560 aa35.89■■■■□ 3.34
ITGB1-215ENST00000488494 SCRIBQ14160 1630 aa35.74■■■■□ 3.31
ITGB1-215ENST00000488494 DNAJC5BQ9UF47 199 aa35.64■■■■□ 3.3
ITGB1-215ENST00000488494 SHROOM4Q9ULL8 1493 aa35.48■■■■□ 3.27
ITGB1-215ENST00000488494 EIF4G1Q04637 1599 aaKnown RBP34.97■■■■□ 3.19
ITGB1-215ENST00000488494 CC2D2AQ9P2K1 1620 aa34.91■■■■□ 3.18
ITGB1-215ENST00000488494 CECR2Q9BXF3 1484 aa34.71■■■■□ 3.15
ITGB1-215ENST00000488494 SMARCA4P51532 1647 aa34.12■■■■□ 3.05
ITGB1-215ENST00000488494 BAZ1AQ9NRL2 1556 aaPredicted RBP34■■■■□ 3.03
ITGB1-215ENST00000488494 ATAD2BQ9ULI0 1458 aa33.96■■■■□ 3.03
ITGB1-215ENST00000488494 NCAPD3P42695 1498 aa33.95■■■■□ 3.03
ITGB1-215ENST00000488494 SMARCA2P51531 1590 aa33.92■■■■□ 3.02
ITGB1-215ENST00000488494 HMGXB3Q12766 1538 aa33.84■■■■□ 3.01
ITGB1-215ENST00000488494 MROH2BQ7Z745 1585 aa33.78■■■■□ 3
ITGB1-215ENST00000488494 PEG3Q9GZU2 1588 aa33.76■■■□□ 2.99
ITGB1-215ENST00000488494 BAZ1BQ9UIG0 1483 aaKnown RBP33.69■■■□□ 2.98
ITGB1-215ENST00000488494 WIZO95785 1651 aa33.41■■■□□ 2.94
ITGB1-215ENST00000488494 NESP48681 1621 aa33.31■■■□□ 2.92
ITGB1-215ENST00000488494 ERCC6Q03468 1493 aa33.31■■■□□ 2.92
ITGB1-215ENST00000488494 RSF1Q96T23 1441 aaPredicted RBP33.24■■■□□ 2.91
ITGB1-215ENST00000488494 LAMC3Q9Y6N6 1575 aa33.17■■■□□ 2.9
ITGB1-215ENST00000488494 CUX2O14529 1486 aa33.05■■■□□ 2.88
ITGB1-215ENST00000488494 TOP2AP11388 1531 aaKnown RBP33.05■■■□□ 2.88
ITGB1-215ENST00000488494 CADPSQ9ULU8 1353 aa32.95■■■□□ 2.86
ITGB1-215ENST00000488494 KIF21AQ7Z4S6 1674 aa32.94■■■□□ 2.86
ITGB1-215ENST00000488494 THOC2Q8NI27 1593 aaKnown RBP32.93■■■□□ 2.86
ITGB1-215ENST00000488494 PDS5BQ9NTI5 1447 aa32.91■■■□□ 2.86
ITGB1-215ENST00000488494 CFTRP13569 1480 aa32.71■■■□□ 2.83
ITGB1-215ENST00000488494 MRC2Q9UBG0 1479 aa32.66■■■□□ 2.82
ITGB1-215ENST00000488494 FANCD2Q9BXW9 1451 aa32.63■■■□□ 2.81
ITGB1-215ENST00000488494 CEP164Q9UPV0 1460 aa32.63■■■□□ 2.81
ITGB1-215ENST00000488494 CCDC88BA6NC98 1476 aa32.61■■■□□ 2.81
ITGB1-215ENST00000488494 WDR62O43379 1518 aa32.57■■■□□ 2.8
ITGB1-215ENST00000488494 PRDM2Q13029 1718 aa32.51■■■□□ 2.8
ITGB1-215ENST00000488494 URB2Q14146 1524 aaKnown RBP32.34■■■□□ 2.77
ITGB1-215ENST00000488494 DNAJC5Q9H3Z4 198 aa32.32■■■□□ 2.76
ITGB1-215ENST00000488494 SUPT5HO00267 1087 aaKnown RBP32.11■■■□□ 2.73
ITGB1-215ENST00000488494 TOPBP1Q92547 1522 aa32.08■■■□□ 2.73
ITGB1-215ENST00000488494 DNMBPQ6XZF7 1577 aa32.02■■■□□ 2.72
ITGB1-215ENST00000488494 ABCC8Q09428 1581 aa31.98■■■□□ 2.71
ITGB1-215ENST00000488494 IFT140Q96RY7 1462 aa31.94■■■□□ 2.7
ITGB1-215ENST00000488494 ZNF608Q9ULD9 1512 aaPredicted RBP31.85■■■□□ 2.69
ITGB1-215ENST00000488494 POLA1P09884 1462 aaPredicted RBP31.78■■■□□ 2.68
ITGB1-215ENST00000488494 EIF4G3O43432 1585 aaKnown RBP31.77■■■□□ 2.68
ITGB1-215ENST00000488494 TARBP1Q13395 1621 aaKnown RBP31.76■■■□□ 2.67
ITGB1-215ENST00000488494 CUX1P39880 1505 aa31.73■■■□□ 2.67
ITGB1-215ENST00000488494 FGD5Q6ZNL6 1462 aa31.67■■■□□ 2.66
ITGB1-215ENST00000488494 RAD54L2Q9Y4B4 1467 aa31.64■■■□□ 2.66
ITGB1-215ENST00000488494 AQRO60306 1485 aaKnown RBP eCLIP31.59■■■□□ 2.653e-6■□□□□ 10.3
ITGB1-215ENST00000488494 SOGA1O94964 1423 aa31.58■■■□□ 2.65
ITGB1-215ENST00000488494 OSCARQ8IYS5 282 aa31.51■■■□□ 2.63
ITGB1-215ENST00000488494 WDR97A6NE52 1622 aa31.49■■■□□ 2.63
ITGB1-215ENST00000488494 TDRD9Q8NDG6 1382 aaKnown RBP31.46■■■□□ 2.63
ITGB1-215ENST00000488494 CHD1O14646 1710 aa31.41■■■□□ 2.62
ITGB1-215ENST00000488494 BIVM-ERCC5R4GMW8 1640 aa31.38■■■□□ 2.61
ITGB1-215ENST00000488494 SYNJ1O43426 1573 aa31.37■■■□□ 2.61
ITGB1-215ENST00000488494 TOP2BQ02880 1626 aa31.36■■■□□ 2.61
ITGB1-215ENST00000488494 WRNQ14191 1432 aaPredicted RBP eCLIP31.36■■■□□ 2.61
ITGB1-215ENST00000488494 SNAPC4Q5SXM2 1469 aa31.34■■■□□ 2.61
ITGB1-215ENST00000488494 ABCA10Q8WWZ4 1543 aa31.33■■■□□ 2.61
ITGB1-215ENST00000488494 GRIN2BQ13224 1484 aa31.3■■■□□ 2.6
ITGB1-215ENST00000488494 ABCA5Q8WWZ7 1642 aa31.28■■■□□ 2.6
ITGB1-215ENST00000488494 PBRM1Q86U86 1689 aa31.28■■■□□ 2.6
ITGB1-215ENST00000488494 MAGI1Q96QZ7 1491 aaPredicted RBP31.27■■■□□ 2.6
ITGB1-215ENST00000488494 GAPVD1Q14C86 1478 aa31.25■■■□□ 2.59
ITGB1-215ENST00000488494 FBLN2P98095 1184 aa31.24■■■□□ 2.59
ITGB1-215ENST00000488494 RIMBP3CA6NJZ7 1639 aa31.2■■■□□ 2.58
ITGB1-215ENST00000488494 RIMBP3BA6NNM3 1639 aa31.2■■■□□ 2.58
ITGB1-215ENST00000488494 RIMBP3Q9UFD9 1639 aa31.2■■■□□ 2.58
ITGB1-215ENST00000488494 TRIM41Q8WV44 630 aa31.18■■■□□ 2.58
ITGB1-215ENST00000488494 SYNJ2O15056 1496 aa31.14■■■□□ 2.57
ITGB1-215ENST00000488494 ARHGEF11O15085 1522 aa31.14■■■□□ 2.57
ITGB1-215ENST00000488494 CHMP7Q8WUX9 453 aaPredicted RBP31.08■■■□□ 2.57
ITGB1-215ENST00000488494 CLASP1Q7Z460 1538 aa31.05■■■□□ 2.56
ITGB1-215ENST00000488494 ADAMTS12P58397 1594 aa31.03■■■□□ 2.56
ITGB1-215ENST00000488494 ERICH3Q5RHP9 1530 aa30.94■■■□□ 2.54
ITGB1-215ENST00000488494 GRIN2AQ12879 1464 aa30.92■■■□□ 2.54
ITGB1-215ENST00000488494 ARAP1Q96P48 1450 aa30.88■■■□□ 2.53
ITGB1-215ENST00000488494 FHAD1B1AJZ9 1412 aa30.87■■■□□ 2.53
ITGB1-215ENST00000488494 CEP170Q5SW79 1584 aa30.81■■■□□ 2.52
ITGB1-215ENST00000488494 NUP160Q12769 1436 aa30.78■■■□□ 2.52
ITGB1-215ENST00000488494 CYB5RLQ6IPT4 315 aa30.76■■■□□ 2.51
ITGB1-215ENST00000488494 KIF27Q86VH2 1401 aa30.72■■■□□ 2.51
ITGB1-215ENST00000488494 CUL7Q14999 1698 aa30.64■■■□□ 2.5
ITGB1-215ENST00000488494 SHROOM2Q13796 1616 aa30.62■■■□□ 2.49
ITGB1-215ENST00000488494 ERCC6L2Q5T890 1561 aa30.6■■■□□ 2.49
ITGB1-215ENST00000488494 IGF1RP08069 1367 aa30.59■■■□□ 2.49
ITGB1-215ENST00000488494 RUSC2Q8N2Y8 1516 aa30.58■■■□□ 2.49
ITGB1-215ENST00000488494 PRG4Q92954 1404 aaPredicted RBP30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms