RNA–Protein interactions for RNA: ENST00000488311.1

PLD3-213, Transcript of phospholipase D family member 3, humanhuman

TSL 2

Gene PLD3, Length 750 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLD3-213ENST00000488311 NISCHQ9Y2I1 1504 aa30.63■■■□□ 2.49
PLD3-213ENST00000488311 CCDC180Q9P1Z9 1646 aa27.32■■□□□ 1.96
PLD3-213ENST00000488311 ABCC9O60706 1549 aa27.16■■□□□ 1.94
PLD3-213ENST00000488311 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
PLD3-213ENST00000488311 NACADO15069 1562 aa25.75■■□□□ 1.71
PLD3-213ENST00000488311 DCAF8L2P0C7V8 631 aa25.7■■□□□ 1.7
PLD3-213ENST00000488311 ZCCHC6Q5VYS8 1495 aaKnown RBP25.47■■□□□ 1.67
PLD3-213ENST00000488311 MYO15BQ96JP2 1530 aa25.46■■□□□ 1.67
PLD3-213ENST00000488311 UNC13AQ9UPW8 1703 aa25.41■■□□□ 1.66
PLD3-213ENST00000488311 PABPN1Q86U42 306 aaKnown RBP eCLIP25.34■■□□□ 1.65
PLD3-213ENST00000488311 DNAJC5BQ9UF47 199 aa25.31■■□□□ 1.64
PLD3-213ENST00000488311 DCAF1Q9Y4B6 1507 aa25.25■■□□□ 1.63
PLD3-213ENST00000488311 BICRAQ9NZM4 1560 aa25.23■■□□□ 1.63
PLD3-213ENST00000488311 SCRIBQ14160 1630 aa25.02■■□□□ 1.6
PLD3-213ENST00000488311 SHROOM4Q9ULL8 1493 aa24.73■■□□□ 1.55
PLD3-213ENST00000488311 EIF4G1Q04637 1599 aaKnown RBP24.54■■□□□ 1.52
PLD3-213ENST00000488311 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
PLD3-213ENST00000488311 CECR2Q9BXF3 1484 aa24.39■■□□□ 1.5
PLD3-213ENST00000488311 SMARCA4P51532 1647 aa23.85■■□□□ 1.41
PLD3-213ENST00000488311 ATAD2BQ9ULI0 1458 aa23.8■■□□□ 1.4
PLD3-213ENST00000488311 NCAPD3P42695 1498 aa23.79■■□□□ 1.4
PLD3-213ENST00000488311 BAZ1AQ9NRL2 1556 aaPredicted RBP23.71■■□□□ 1.39
PLD3-213ENST00000488311 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
PLD3-213ENST00000488311 MROH2BQ7Z745 1585 aa23.66■■□□□ 1.38
PLD3-213ENST00000488311 HMGXB3Q12766 1538 aa23.64■■□□□ 1.38
PLD3-213ENST00000488311 PEG3Q9GZU2 1588 aa23.58■■□□□ 1.37
PLD3-213ENST00000488311 BAZ1BQ9UIG0 1483 aaKnown RBP23.56■■□□□ 1.36
PLD3-213ENST00000488311 NESP48681 1621 aa23.45■■□□□ 1.34
PLD3-213ENST00000488311 WIZO95785 1651 aa23.4■■□□□ 1.34
PLD3-213ENST00000488311 ERCC6Q03468 1493 aa23.36■■□□□ 1.33
PLD3-213ENST00000488311 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
PLD3-213ENST00000488311 LAMC3Q9Y6N6 1575 aa23.2■■□□□ 1.3
PLD3-213ENST00000488311 CUX2O14529 1486 aa23.2■■□□□ 1.3
PLD3-213ENST00000488311 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.29
PLD3-213ENST00000488311 KIF21AQ7Z4S6 1674 aa23.13■■□□□ 1.29
PLD3-213ENST00000488311 CADPSQ9ULU8 1353 aa23.08■■□□□ 1.29
PLD3-213ENST00000488311 TOP2AP11388 1531 aaKnown RBP23.06■■□□□ 1.28
PLD3-213ENST00000488311 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
PLD3-213ENST00000488311 DNAJC5Q9H3Z4 198 aa22.91■■□□□ 1.26
PLD3-213ENST00000488311 CFTRP13569 1480 aa22.9■■□□□ 1.26
PLD3-213ENST00000488311 MRC2Q9UBG0 1479 aa22.87■■□□□ 1.25
PLD3-213ENST00000488311 FANCD2Q9BXW9 1451 aa22.85■■□□□ 1.25
PLD3-213ENST00000488311 WDR62O43379 1518 aa22.83■■□□□ 1.25
PLD3-213ENST00000488311 CEP164Q9UPV0 1460 aa22.83■■□□□ 1.25
PLD3-213ENST00000488311 CCDC88BA6NC98 1476 aa22.82■■□□□ 1.24
PLD3-213ENST00000488311 URB2Q14146 1524 aaKnown RBP22.7■■□□□ 1.22
PLD3-213ENST00000488311 PRDM2Q13029 1718 aa22.68■■□□□ 1.22
PLD3-213ENST00000488311 TOPBP1Q92547 1522 aa22.47■■□□□ 1.19
PLD3-213ENST00000488311 ZNF608Q9ULD9 1512 aaPredicted RBP22.4■■□□□ 1.18
PLD3-213ENST00000488311 SUPT5HO00267 1087 aaKnown RBP22.39■■□□□ 1.17
PLD3-213ENST00000488311 DNMBPQ6XZF7 1577 aa22.38■■□□□ 1.17
PLD3-213ENST00000488311 IFT140Q96RY7 1462 aa22.34■■□□□ 1.17
PLD3-213ENST00000488311 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
PLD3-213ENST00000488311 TARBP1Q13395 1621 aaKnown RBP22.27■■□□□ 1.16
PLD3-213ENST00000488311 POLA1P09884 1462 aaPredicted RBP22.26■■□□□ 1.15
PLD3-213ENST00000488311 EIF4G3O43432 1585 aaKnown RBP22.25■■□□□ 1.15
PLD3-213ENST00000488311 RAD54L2Q9Y4B4 1467 aa22.22■■□□□ 1.15
PLD3-213ENST00000488311 CUX1P39880 1505 aa22.21■■□□□ 1.15
PLD3-213ENST00000488311 AQRO60306 1485 aaKnown RBP eCLIP22.19■■□□□ 1.142e-7■□□□□ 9.6
PLD3-213ENST00000488311 FGD5Q6ZNL6 1462 aa22.15■■□□□ 1.14
PLD3-213ENST00000488311 OSCARQ8IYS5 282 aa22.15■■□□□ 1.14
PLD3-213ENST00000488311 SOGA1O94964 1423 aa22.11■■□□□ 1.13
PLD3-213ENST00000488311 TDRD9Q8NDG6 1382 aaKnown RBP22.08■■□□□ 1.12
PLD3-213ENST00000488311 TRIM41Q8WV44 630 aa22.06■■□□□ 1.12
PLD3-213ENST00000488311 CHD1O14646 1710 aa22.04■■□□□ 1.12
PLD3-213ENST00000488311 WDR97A6NE52 1622 aa22.02■■□□□ 1.11
PLD3-213ENST00000488311 SNAPC4Q5SXM2 1469 aa21.96■■□□□ 1.11
PLD3-213ENST00000488311 RIMBP3CA6NJZ7 1639 aa21.96■■□□□ 1.11
PLD3-213ENST00000488311 RIMBP3BA6NNM3 1639 aa21.96■■□□□ 1.11
PLD3-213ENST00000488311 RIMBP3Q9UFD9 1639 aa21.96■■□□□ 1.11
PLD3-213ENST00000488311 SYNJ1O43426 1573 aa21.93■■□□□ 1.1
PLD3-213ENST00000488311 FBLN2P98095 1184 aa21.92■■□□□ 1.1
PLD3-213ENST00000488311 ARHGEF11O15085 1522 aa21.9■■□□□ 1.1
PLD3-213ENST00000488311 ABCA10Q8WWZ4 1543 aa21.89■■□□□ 1.09
PLD3-213ENST00000488311 BIVM-ERCC5R4GMW8 1640 aa21.88■■□□□ 1.09
PLD3-213ENST00000488311 GRIN2BQ13224 1484 aa21.88■■□□□ 1.09
PLD3-213ENST00000488311 PBRM1Q86U86 1689 aa21.88■■□□□ 1.09
PLD3-213ENST00000488311 TOP2BQ02880 1626 aa21.88■■□□□ 1.09
PLD3-213ENST00000488311 ABCA5Q8WWZ7 1642 aa21.88■■□□□ 1.09
PLD3-213ENST00000488311 WRNQ14191 1432 aaPredicted RBP eCLIP21.87■■□□□ 1.09
PLD3-213ENST00000488311 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
PLD3-213ENST00000488311 MAGI1Q96QZ7 1491 aaPredicted RBP21.84■■□□□ 1.09
PLD3-213ENST00000488311 CLASP1Q7Z460 1538 aa21.79■■□□□ 1.08
PLD3-213ENST00000488311 SYNJ2O15056 1496 aa21.78■■□□□ 1.08
PLD3-213ENST00000488311 CHMP7Q8WUX9 453 aaPredicted RBP21.77■■□□□ 1.08
PLD3-213ENST00000488311 ARAP1Q96P48 1450 aa21.74■■□□□ 1.07
PLD3-213ENST00000488311 CYB5RLQ6IPT4 315 aa21.69■■□□□ 1.06
PLD3-213ENST00000488311 ADAMTS12P58397 1594 aa21.69■■□□□ 1.06
PLD3-213ENST00000488311 GRIN2AQ12879 1464 aa21.64■■□□□ 1.05
PLD3-213ENST00000488311 CEP170Q5SW79 1584 aa21.61■■□□□ 1.05
PLD3-213ENST00000488311 ERICH3Q5RHP9 1530 aa21.59■■□□□ 1.05
PLD3-213ENST00000488311 FHAD1B1AJZ9 1412 aa21.57■■□□□ 1.04
PLD3-213ENST00000488311 NUP160Q12769 1436 aa21.55■■□□□ 1.04
PLD3-213ENST00000488311 ERCC6L2Q5T890 1561 aa21.55■■□□□ 1.04
PLD3-213ENST00000488311 SHROOM2Q13796 1616 aa21.44■■□□□ 1.02
PLD3-213ENST00000488311 IGF1RP08069 1367 aa21.41■■□□□ 1.02
PLD3-213ENST00000488311 KIF27Q86VH2 1401 aa21.39■■□□□ 1.02
PLD3-213ENST00000488311 RUSC2Q8N2Y8 1516 aa21.39■■□□□ 1.01
PLD3-213ENST00000488311 CUL7Q14999 1698 aa21.32■■□□□ 1
PLD3-213ENST00000488311 TRHP20396 242 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms