RNA–Protein interactions for RNA: ENST00000488156.1

ARF4-205, Transcript of ADP ribosylation factor 4, humanhuman

TSL 3

Gene ARF4, Length 732 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARF4-205ENST00000488156 AEBP2Q6ZN18 517 aaPredicted RBP20.45■□□□□ 0.86
ARF4-205ENST00000488156 CHIC1Q5VXU3 224 aa20.05■□□□□ 0.8
ARF4-205ENST00000488156 PHF23Q9BUL5 403 aaPredicted RBP17.53■□□□□ 0.4
ARF4-205ENST00000488156 SENP3Q9H4L4 574 aaPredicted RBP17.52■□□□□ 0.4
ARF4-205ENST00000488156 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
ARF4-205ENST00000488156 PLPPR3Q6T4P5 718 aa16.33■□□□□ 0.2
ARF4-205ENST00000488156 FOXD1Q16676 465 aa16.16■□□□□ 0.18
ARF4-205ENST00000488156 ABCC9O60706 1549 aa15.49■□□□□ 0.07
ARF4-205ENST00000488156 ADRA2BP18089 450 aa15.49■□□□□ 0.07
ARF4-205ENST00000488156 PPP6R1Q9UPN7 881 aa15.45■□□□□ 0.06
ARF4-205ENST00000488156 DNAJC5BQ9UF47 199 aa15.35■□□□□ 0.05
ARF4-205ENST00000488156 PIAS4Q8N2W9 510 aaPredicted RBP15.31■□□□□ 0.04
ARF4-205ENST00000488156 MSH5O43196 834 aa15.05■□□□□ -0
ARF4-205ENST00000488156 CCDC180Q9P1Z9 1646 aa14.79□□□□□ -0.04
ARF4-205ENST00000488156 DNAJC5Q9H3Z4 198 aa14.74□□□□□ -0.05
ARF4-205ENST00000488156 SCAF1Q9H7N4 1312 aaKnown RBP14.37□□□□□ -0.11
ARF4-205ENST00000488156 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
ARF4-205ENST00000488156 RB1CC1Q8TDY2 1594 aa14.33□□□□□ -0.12
ARF4-205ENST00000488156 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
ARF4-205ENST00000488156 DCAF8L2P0C7V8 631 aa14.19□□□□□ -0.14
ARF4-205ENST00000488156 NACADO15069 1562 aa14.09□□□□□ -0.15
ARF4-205ENST00000488156 NCBP3Q53F19 620 aaKnown RBP14.07□□□□□ -0.16
ARF4-205ENST00000488156 CECR2Q9BXF3 1484 aa14.05□□□□□ -0.16
ARF4-205ENST00000488156 MAPK8IP2Q13387 824 aaPredicted RBP14.03□□□□□ -0.16
ARF4-205ENST00000488156 UNC13AQ9UPW8 1703 aa14.01□□□□□ -0.17
ARF4-205ENST00000488156 CNKSR2Q8WXI2 1034 aa13.98□□□□□ -0.17
ARF4-205ENST00000488156 BICRAQ9NZM4 1560 aa13.96□□□□□ -0.18
ARF4-205ENST00000488156 CC2D2AQ9P2K1 1620 aa13.94□□□□□ -0.18
ARF4-205ENST00000488156 DMRT2Q9Y5R5 561 aa13.94□□□□□ -0.18
ARF4-205ENST00000488156 KCNA4P22459 653 aa13.92□□□□□ -0.18
ARF4-205ENST00000488156 POTEDQ86YR6 584 aa13.92□□□□□ -0.18
ARF4-205ENST00000488156 MYO15BQ96JP2 1530 aa13.91□□□□□ -0.18
ARF4-205ENST00000488156 TRIM41Q8WV44 630 aa13.74□□□□□ -0.21
ARF4-205ENST00000488156 ZCCHC6Q5VYS8 1495 aaKnown RBP13.73□□□□□ -0.21
ARF4-205ENST00000488156 NPM3O75607 178 aaKnown RBP13.72□□□□□ -0.21
ARF4-205ENST00000488156 DCAF1Q9Y4B6 1507 aa13.71□□□□□ -0.21
ARF4-205ENST00000488156 RNF216Q9NWF9 866 aaPredicted RBP13.71□□□□□ -0.21
ARF4-205ENST00000488156 CUX2O14529 1486 aa13.7□□□□□ -0.22
ARF4-205ENST00000488156 EIF4G1Q04637 1599 aaKnown RBP13.69□□□□□ -0.22
ARF4-205ENST00000488156 SHROOM4Q9ULL8 1493 aa13.64□□□□□ -0.23
ARF4-205ENST00000488156 HOXD11P31277 338 aaPredicted RBP13.63□□□□□ -0.23
ARF4-205ENST00000488156 SCRIBQ14160 1630 aa13.51□□□□□ -0.25
ARF4-205ENST00000488156 ERCC6Q03468 1493 aa13.43□□□□□ -0.26
ARF4-205ENST00000488156 DCAF8L1A6NGE4 600 aa13.39□□□□□ -0.27
ARF4-205ENST00000488156 SLC4A1APQ9BWU0 796 aaKnown RBP13.33□□□□□ -0.28
ARF4-205ENST00000488156 THOC2Q8NI27 1593 aaKnown RBP13.09□□□□□ -0.31
ARF4-205ENST00000488156 NCAPD3P42695 1498 aa13.07□□□□□ -0.32
ARF4-205ENST00000488156 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.32
ARF4-205ENST00000488156 NESP48681 1621 aa13.06□□□□□ -0.32
ARF4-205ENST00000488156 ATAD2BQ9ULI0 1458 aa13□□□□□ -0.33
ARF4-205ENST00000488156 OSCARQ8IYS5 282 aa12.94□□□□□ -0.34
ARF4-205ENST00000488156 SMARCA2P51531 1590 aa12.94□□□□□ -0.34
ARF4-205ENST00000488156 BAZ1AQ9NRL2 1556 aaPredicted RBP12.94□□□□□ -0.34
ARF4-205ENST00000488156 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
ARF4-205ENST00000488156 FOXD4L1Q9NU39 408 aa12.91□□□□□ -0.34
ARF4-205ENST00000488156 SMARCA4P51532 1647 aa12.89□□□□□ -0.35
ARF4-205ENST00000488156 HMGXB3Q12766 1538 aa12.88□□□□□ -0.35
ARF4-205ENST00000488156 EHMT2Q96KQ7 1210 aa12.88□□□□□ -0.35
ARF4-205ENST00000488156 RIMBP3CA6NJZ7 1639 aa12.88□□□□□ -0.35
ARF4-205ENST00000488156 RIMBP3BA6NNM3 1639 aa12.88□□□□□ -0.35
ARF4-205ENST00000488156 RIMBP3Q9UFD9 1639 aa12.88□□□□□ -0.35
ARF4-205ENST00000488156 TRHP20396 242 aaPredicted RBP12.87□□□□□ -0.35
ARF4-205ENST00000488156 BAZ1BQ9UIG0 1483 aaKnown RBP12.85□□□□□ -0.35
ARF4-205ENST00000488156 KIF21AQ7Z4S6 1674 aa12.85□□□□□ -0.35
ARF4-205ENST00000488156 RNF39Q9H2S5 420 aa12.8□□□□□ -0.36
ARF4-205ENST00000488156 LAMC3Q9Y6N6 1575 aa12.8□□□□□ -0.36
ARF4-205ENST00000488156 PEG3Q9GZU2 1588 aa12.79□□□□□ -0.36
ARF4-205ENST00000488156 ILDR1Q86SU0 546 aaPredicted RBP12.79□□□□□ -0.36
ARF4-205ENST00000488156 MROH2BQ7Z745 1585 aa12.77□□□□□ -0.36
ARF4-205ENST00000488156 MYCNP04198 464 aaPredicted RBP12.77□□□□□ -0.37
ARF4-205ENST00000488156 U3KPZ7 1027 aaPredicted RBP12.76□□□□□ -0.37
ARF4-205ENST00000488156 PDS5BQ9NTI5 1447 aa12.76□□□□□ -0.37
ARF4-205ENST00000488156 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.75□□□□□ -0.37
ARF4-205ENST00000488156 HNRNPUL2Q1KMD3 747 aaKnown RBP12.75□□□□□ -0.37
ARF4-205ENST00000488156 ARHGEF11O15085 1522 aa12.74□□□□□ -0.37
ARF4-205ENST00000488156 ZBTB22O15209 634 aa12.74□□□□□ -0.37
ARF4-205ENST00000488156 C1QBPQ07021 282 aaKnown RBP12.72□□□□□ -0.37
ARF4-205ENST00000488156 CYB5RLQ6IPT4 315 aa12.72□□□□□ -0.37
ARF4-205ENST00000488156 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
ARF4-205ENST00000488156 WDR62O43379 1518 aa12.7□□□□□ -0.38
ARF4-205ENST00000488156 MRC2Q9UBG0 1479 aa12.7□□□□□ -0.38
ARF4-205ENST00000488156 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
ARF4-205ENST00000488156 APLP2Q06481 763 aa12.67□□□□□ -0.38
ARF4-205ENST00000488156 SAMD1Q6SPF0 538 aaPredicted RBP12.66□□□□□ -0.38
ARF4-205ENST00000488156 WIZO95785 1651 aa12.57□□□□□ -0.4
ARF4-205ENST00000488156 RSF1Q96T23 1441 aaPredicted RBP12.56□□□□□ -0.4
ARF4-205ENST00000488156 ARAP1Q96P48 1450 aa12.55□□□□□ -0.4
ARF4-205ENST00000488156 CACNB1Q02641 598 aaPredicted RBP12.55□□□□□ -0.4
ARF4-205ENST00000488156 CFTRP13569 1480 aa12.5□□□□□ -0.41
ARF4-205ENST00000488156 FANCD2Q9BXW9 1451 aa12.5□□□□□ -0.41
ARF4-205ENST00000488156 CEP164Q9UPV0 1460 aa12.5□□□□□ -0.41
ARF4-205ENST00000488156 ATXN8OSP0DMR3 200 aa12.48□□□□□ -0.41
ARF4-205ENST00000488156 TOP2AP11388 1531 aaKnown RBP12.44□□□□□ -0.42
ARF4-205ENST00000488156 CAPN15O75808 1086 aa12.43□□□□□ -0.42
ARF4-205ENST00000488156 ZNF219Q9P2Y4 722 aaPredicted RBP12.41□□□□□ -0.42
ARF4-205ENST00000488156 SPINK5Q9NQ38 1064 aaPredicted RBP12.38□□□□□ -0.43
ARF4-205ENST00000488156 URB2Q14146 1524 aaKnown RBP12.37□□□□□ -0.43
ARF4-205ENST00000488156 CCDC88BA6NC98 1476 aa12.36□□□□□ -0.43
ARF4-205ENST00000488156 ZNF608Q9ULD9 1512 aaPredicted RBP12.34□□□□□ -0.43
ARF4-205ENST00000488156 CHD1O14646 1710 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms