RNA–Protein interactions for RNA: ENST00000487670.1

TOM1-214, Transcript of target of myb1 membrane trafficking protein, humanhuman

TSL 2

Gene TOM1, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1-214ENST00000487670 NISCHQ9Y2I1 1504 aa42.3■■■■■ 4.36
TOM1-214ENST00000487670 ABCC9O60706 1549 aa39.03■■■■□ 3.84
TOM1-214ENST00000487670 CCDC180Q9P1Z9 1646 aa38.35■■■■□ 3.73
TOM1-214ENST00000487670 DNAJC5BQ9UF47 199 aa37.25■■■■□ 3.55
TOM1-214ENST00000487670 RB1CC1Q8TDY2 1594 aa36.74■■■■□ 3.47
TOM1-214ENST00000487670 UNC13AQ9UPW8 1703 aa36.33■■■■□ 3.41
TOM1-214ENST00000487670 NACADO15069 1562 aa36.28■■■■□ 3.4
TOM1-214ENST00000487670 PABPN1Q86U42 306 aaKnown RBP eCLIP36.15■■■■□ 3.38
TOM1-214ENST00000487670 BICRAQ9NZM4 1560 aa35.9■■■■□ 3.34
TOM1-214ENST00000487670 DCAF8L2P0C7V8 631 aa35.87■■■■□ 3.33
TOM1-214ENST00000487670 MYO15BQ96JP2 1530 aa35.47■■■■□ 3.27
TOM1-214ENST00000487670 CC2D2AQ9P2K1 1620 aa35.27■■■■□ 3.24
TOM1-214ENST00000487670 CECR2Q9BXF3 1484 aa35.14■■■■□ 3.22
TOM1-214ENST00000487670 SCRIBQ14160 1630 aa34.99■■■■□ 3.19
TOM1-214ENST00000487670 SHROOM4Q9ULL8 1493 aa34.99■■■■□ 3.19
TOM1-214ENST00000487670 EIF4G1Q04637 1599 aaKnown RBP34.97■■■■□ 3.19
TOM1-214ENST00000487670 ZCCHC6Q5VYS8 1495 aaKnown RBP34.95■■■■□ 3.19
TOM1-214ENST00000487670 DCAF1Q9Y4B6 1507 aa34.81■■■■□ 3.16
TOM1-214ENST00000487670 DNAJC5Q9H3Z4 198 aa34.51■■■■□ 3.12
TOM1-214ENST00000487670 CUX2O14529 1486 aa33.77■■■■□ 3
TOM1-214ENST00000487670 ERCC6Q03468 1493 aa33.62■■■□□ 2.97
TOM1-214ENST00000487670 NCAPD3P42695 1498 aa33.46■■■□□ 2.95
TOM1-214ENST00000487670 NESP48681 1621 aa33.4■■■□□ 2.94
TOM1-214ENST00000487670 ATAD2BQ9ULI0 1458 aa33.35■■■□□ 2.93
TOM1-214ENST00000487670 SMARCA4P51532 1647 aa33.25■■■□□ 2.91
TOM1-214ENST00000487670 THOC2Q8NI27 1593 aaKnown RBP33.25■■■□□ 2.91
TOM1-214ENST00000487670 HMGXB3Q12766 1538 aa33.24■■■□□ 2.91
TOM1-214ENST00000487670 SMARCA2P51531 1590 aa33.17■■■□□ 2.9
TOM1-214ENST00000487670 KIF21AQ7Z4S6 1674 aa33.08■■■□□ 2.89
TOM1-214ENST00000487670 BAZ1BQ9UIG0 1483 aaKnown RBP32.97■■■□□ 2.87
TOM1-214ENST00000487670 LAMC3Q9Y6N6 1575 aa32.9■■■□□ 2.86
TOM1-214ENST00000487670 PEG3Q9GZU2 1588 aa32.85■■■□□ 2.85
TOM1-214ENST00000487670 BAZ1AQ9NRL2 1556 aaPredicted RBP32.83■■■□□ 2.85
TOM1-214ENST00000487670 TRIM41Q8WV44 630 aa32.8■■■□□ 2.84
TOM1-214ENST00000487670 MROH2BQ7Z745 1585 aa32.69■■■□□ 2.82
TOM1-214ENST00000487670 PDS5BQ9NTI5 1447 aa32.59■■■□□ 2.81
TOM1-214ENST00000487670 WDR62O43379 1518 aa32.49■■■□□ 2.79
TOM1-214ENST00000487670 MRC2Q9UBG0 1479 aa32.48■■■□□ 2.79
TOM1-214ENST00000487670 CADPSQ9ULU8 1353 aa32.39■■■□□ 2.78
TOM1-214ENST00000487670 WIZO95785 1651 aa32.36■■■□□ 2.77
TOM1-214ENST00000487670 CEP164Q9UPV0 1460 aa32.21■■■□□ 2.75
TOM1-214ENST00000487670 FANCD2Q9BXW9 1451 aa32.12■■■□□ 2.73
TOM1-214ENST00000487670 URB2Q14146 1524 aaKnown RBP32■■■□□ 2.71
TOM1-214ENST00000487670 RIMBP3CA6NJZ7 1639 aa32■■■□□ 2.71
TOM1-214ENST00000487670 RIMBP3BA6NNM3 1639 aa32■■■□□ 2.71
TOM1-214ENST00000487670 RIMBP3Q9UFD9 1639 aa32■■■□□ 2.71
TOM1-214ENST00000487670 OSCARQ8IYS5 282 aa31.98■■■□□ 2.71
TOM1-214ENST00000487670 CFTRP13569 1480 aa31.94■■■□□ 2.7
TOM1-214ENST00000487670 PRDM2Q13029 1718 aa31.87■■■□□ 2.69
TOM1-214ENST00000487670 ZNF608Q9ULD9 1512 aaPredicted RBP31.75■■■□□ 2.67
TOM1-214ENST00000487670 TOP2AP11388 1531 aaKnown RBP31.74■■■□□ 2.67
TOM1-214ENST00000487670 ARHGEF11O15085 1522 aa31.73■■■□□ 2.67
TOM1-214ENST00000487670 RSF1Q96T23 1441 aaPredicted RBP31.64■■■□□ 2.66
TOM1-214ENST00000487670 CHD1O14646 1710 aa31.59■■■□□ 2.65
TOM1-214ENST00000487670 EIF4G3O43432 1585 aaKnown RBP31.58■■■□□ 2.65
TOM1-214ENST00000487670 IFT140Q96RY7 1462 aa31.53■■■□□ 2.64
TOM1-214ENST00000487670 TOPBP1Q92547 1522 aa31.49■■■□□ 2.63
TOM1-214ENST00000487670 ARAP1Q96P48 1450 aa31.4■■■□□ 2.62
TOM1-214ENST00000487670 CYB5RLQ6IPT4 315 aa31.39■■■□□ 2.62
TOM1-214ENST00000487670 CCDC88BA6NC98 1476 aa31.38■■■□□ 2.61
TOM1-214ENST00000487670 TARBP1Q13395 1621 aaKnown RBP31.35■■■□□ 2.61
TOM1-214ENST00000487670 DNMBPQ6XZF7 1577 aa31.3■■■□□ 2.6
TOM1-214ENST00000487670 AQRO60306 1485 aaKnown RBP eCLIP31.28■■■□□ 2.6
TOM1-214ENST00000487670 TRHP20396 242 aaPredicted RBP31.23■■■□□ 2.59
TOM1-214ENST00000487670 ABCC8Q09428 1581 aa31.14■■■□□ 2.58
TOM1-214ENST00000487670 POLA1P09884 1462 aaPredicted RBP31.12■■■□□ 2.57
TOM1-214ENST00000487670 FBLN2P98095 1184 aa31.08■■■□□ 2.57
TOM1-214ENST00000487670 RAD54L2Q9Y4B4 1467 aa31.06■■■□□ 2.56
TOM1-214ENST00000487670 CLASP1Q7Z460 1538 aa31.04■■■□□ 2.56
TOM1-214ENST00000487670 SNAPC4Q5SXM2 1469 aa30.96■■■□□ 2.55
TOM1-214ENST00000487670 TDRD9Q8NDG6 1382 aaKnown RBP30.93■■■□□ 2.54
TOM1-214ENST00000487670 SYNJ1O43426 1573 aa30.85■■■□□ 2.53
TOM1-214ENST00000487670 SOGA1O94964 1423 aa30.84■■■□□ 2.53
TOM1-214ENST00000487670 WDR97A6NE52 1622 aa30.84■■■□□ 2.53
TOM1-214ENST00000487670 FGD5Q6ZNL6 1462 aa30.82■■■□□ 2.53
TOM1-214ENST00000487670 PBRM1Q86U86 1689 aa30.8■■■□□ 2.52
TOM1-214ENST00000487670 AEBP2Q6ZN18 517 aaPredicted RBP30.76■■■□□ 2.51
TOM1-214ENST00000487670 CUX1P39880 1505 aa30.76■■■□□ 2.51
TOM1-214ENST00000487670 MAGI1Q96QZ7 1491 aaPredicted RBP30.74■■■□□ 2.51
TOM1-214ENST00000487670 CHMP7Q8WUX9 453 aaPredicted RBP30.67■■■□□ 2.5
TOM1-214ENST00000487670 SYNJ2O15056 1496 aa30.67■■■□□ 2.5
TOM1-214ENST00000487670 GRIN2BQ13224 1484 aa30.67■■■□□ 2.5
TOM1-214ENST00000487670 GAPVD1Q14C86 1478 aa30.65■■■□□ 2.5
TOM1-214ENST00000487670 ERCC6L2Q5T890 1561 aa30.64■■■□□ 2.5
TOM1-214ENST00000487670 ABCA5Q8WWZ7 1642 aa30.55■■■□□ 2.48
TOM1-214ENST00000487670 KIF13AQ9H1H9 1805 aa30.48■■■□□ 2.47
TOM1-214ENST00000487670 CEP170Q5SW79 1584 aa30.41■■■□□ 2.46
TOM1-214ENST00000487670 ABCA10Q8WWZ4 1543 aa30.37■■■□□ 2.45
TOM1-214ENST00000487670 ADAMTS12P58397 1594 aa30.35■■■□□ 2.45
TOM1-214ENST00000487670 GRIN2AQ12879 1464 aa30.34■■■□□ 2.45
TOM1-214ENST00000487670 SHROOM2Q13796 1616 aa30.33■■■□□ 2.45
TOM1-214ENST00000487670 NUP160Q12769 1436 aa30.24■■■□□ 2.43
TOM1-214ENST00000487670 BIVM-ERCC5R4GMW8 1640 aa30.11■■■□□ 2.41
TOM1-214ENST00000487670 FHAD1B1AJZ9 1412 aa30.03■■■□□ 2.4
TOM1-214ENST00000487670 TOP2BQ02880 1626 aa30.02■■■□□ 2.4
TOM1-214ENST00000487670 WRNQ14191 1432 aaPredicted RBP eCLIP30■■■□□ 2.39
TOM1-214ENST00000487670 PRG4Q92954 1404 aaPredicted RBP29.99■■■□□ 2.39
TOM1-214ENST00000487670 TSPOAP1O95153 1857 aa29.98■■■□□ 2.39
TOM1-214ENST00000487670 DIP2BQ9P265 1576 aa29.98■■■□□ 2.39
TOM1-214ENST00000487670 ERICH3Q5RHP9 1530 aa29.96■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms