RNA–Protein interactions for RNA: ENST00000487602.5

RBM28-206, Transcript of RNA binding motif protein 28, humanhuman

TSL 5

Gene RBM28, Length 715 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM28-206ENST00000487602 NISCHQ9Y2I1 1504 aa18.58■□□□□ 0.56
RBM28-206ENST00000487602 AEBP2Q6ZN18 517 aaPredicted RBP16.55■□□□□ 0.24
RBM28-206ENST00000487602 CCDC180Q9P1Z9 1646 aa16.45■□□□□ 0.22
RBM28-206ENST00000487602 CHIC1Q5VXU3 224 aa16.03■□□□□ 0.16
RBM28-206ENST00000487602 ABCC9O60706 1549 aa15.63■□□□□ 0.09
RBM28-206ENST00000487602 ZCCHC6Q5VYS8 1495 aaKnown RBP15.55■□□□□ 0.08
RBM28-206ENST00000487602 DCAF8L2P0C7V8 631 aa15.43■□□□□ 0.06
RBM28-206ENST00000487602 DCAF1Q9Y4B6 1507 aa15.38■□□□□ 0.05
RBM28-206ENST00000487602 MYO15BQ96JP2 1530 aa15.3■□□□□ 0.04
RBM28-206ENST00000487602 NACADO15069 1562 aa15.29■□□□□ 0.04
RBM28-206ENST00000487602 RB1CC1Q8TDY2 1594 aa15.25■□□□□ 0.03
RBM28-206ENST00000487602 UNC13AQ9UPW8 1703 aa14.98□□□□□ -0.01
RBM28-206ENST00000487602 SHROOM4Q9ULL8 1493 aa14.97□□□□□ -0.01
RBM28-206ENST00000487602 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
RBM28-206ENST00000487602 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.05
RBM28-206ENST00000487602 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
RBM28-206ENST00000487602 CECR2Q9BXF3 1484 aa14.44□□□□□ -0.1
RBM28-206ENST00000487602 EIF4G1Q04637 1599 aaKnown RBP14.36□□□□□ -0.11
RBM28-206ENST00000487602 BAZ1AQ9NRL2 1556 aaPredicted RBP14.35□□□□□ -0.11
RBM28-206ENST00000487602 SMARCA4P51532 1647 aa14.33□□□□□ -0.11
RBM28-206ENST00000487602 RSF1Q96T23 1441 aaPredicted RBP14.33□□□□□ -0.11
RBM28-206ENST00000487602 SUPT5HO00267 1087 aaKnown RBP14.33□□□□□ -0.12
RBM28-206ENST00000487602 MROH2BQ7Z745 1585 aa14.33□□□□□ -0.12
RBM28-206ENST00000487602 CC2D2AQ9P2K1 1620 aa14.22□□□□□ -0.13
RBM28-206ENST00000487602 PEG3Q9GZU2 1588 aa14.2□□□□□ -0.14
RBM28-206ENST00000487602 SMARCA2P51531 1590 aa14.17□□□□□ -0.14
RBM28-206ENST00000487602 WIZO95785 1651 aa14.17□□□□□ -0.14
RBM28-206ENST00000487602 ATAD2BQ9ULI0 1458 aa14.16□□□□□ -0.14
RBM28-206ENST00000487602 PHF23Q9BUL5 403 aaPredicted RBP14.15□□□□□ -0.14
RBM28-206ENST00000487602 HMGXB3Q12766 1538 aa14.1□□□□□ -0.15
RBM28-206ENST00000487602 NCAPD3P42695 1498 aa14.09□□□□□ -0.15
RBM28-206ENST00000487602 BAZ1BQ9UIG0 1483 aaKnown RBP14.05□□□□□ -0.16
RBM28-206ENST00000487602 TOP2AP11388 1531 aaKnown RBP14.05□□□□□ -0.16
RBM28-206ENST00000487602 DNAJC5BQ9UF47 199 aa14□□□□□ -0.17
RBM28-206ENST00000487602 SENP3Q9H4L4 574 aaPredicted RBP13.96□□□□□ -0.17
RBM28-206ENST00000487602 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
RBM28-206ENST00000487602 PRDM2Q13029 1718 aa13.76□□□□□ -0.21
RBM28-206ENST00000487602 CADPSQ9ULU8 1353 aa13.71□□□□□ -0.21
RBM28-206ENST00000487602 LAMC3Q9Y6N6 1575 aa13.71□□□□□ -0.21
RBM28-206ENST00000487602 CFTRP13569 1480 aa13.7□□□□□ -0.22
RBM28-206ENST00000487602 NESP48681 1621 aa13.61□□□□□ -0.23
RBM28-206ENST00000487602 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
RBM28-206ENST00000487602 PDS5BQ9NTI5 1447 aa13.55□□□□□ -0.24
RBM28-206ENST00000487602 FANCD2Q9BXW9 1451 aa13.53□□□□□ -0.24
RBM28-206ENST00000487602 TRIM41Q8WV44 630 aa13.51□□□□□ -0.25
RBM28-206ENST00000487602 ABCC8Q09428 1581 aa13.5□□□□□ -0.25
RBM28-206ENST00000487602 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
RBM28-206ENST00000487602 WRNQ14191 1432 aaPredicted RBP eCLIP13.49□□□□□ -0.25
RBM28-206ENST00000487602 THOC2Q8NI27 1593 aaKnown RBP13.48□□□□□ -0.25
RBM28-206ENST00000487602 ERCC6Q03468 1493 aa13.48□□□□□ -0.25
RBM28-206ENST00000487602 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
RBM28-206ENST00000487602 CUX1P39880 1505 aa13.41□□□□□ -0.26
RBM28-206ENST00000487602 SYNJ1O43426 1573 aa13.41□□□□□ -0.26
RBM28-206ENST00000487602 DNMBPQ6XZF7 1577 aa13.41□□□□□ -0.26
RBM28-206ENST00000487602 WDR62O43379 1518 aa13.4□□□□□ -0.26
RBM28-206ENST00000487602 BIVM-ERCC5R4GMW8 1640 aa13.39□□□□□ -0.27
RBM28-206ENST00000487602 TOP2BQ02880 1626 aa13.39□□□□□ -0.27
RBM28-206ENST00000487602 URB2Q14146 1524 aaKnown RBP13.37□□□□□ -0.27
RBM28-206ENST00000487602 TOPBP1Q92547 1522 aa13.36□□□□□ -0.27
RBM28-206ENST00000487602 FGD5Q6ZNL6 1462 aa13.3□□□□□ -0.28
RBM28-206ENST00000487602 POLA1P09884 1462 aaPredicted RBP13.27□□□□□ -0.29
RBM28-206ENST00000487602 WDR97A6NE52 1622 aa13.27□□□□□ -0.29
RBM28-206ENST00000487602 CUX2O14529 1486 aa13.26□□□□□ -0.29
RBM28-206ENST00000487602 SOGA1O94964 1423 aa13.26□□□□□ -0.29
RBM28-206ENST00000487602 RAD54L2Q9Y4B4 1467 aa13.23□□□□□ -0.29
RBM28-206ENST00000487602 FAM9AQ8IZU1 332 aaPredicted RBP13.23□□□□□ -0.29
RBM28-206ENST00000487602 TARBP1Q13395 1621 aaKnown RBP13.22□□□□□ -0.29
RBM28-206ENST00000487602 EEA1Q15075 1411 aa13.21□□□□□ -0.3
RBM28-206ENST00000487602 RUSC2Q8N2Y8 1516 aa13.2□□□□□ -0.3
RBM28-206ENST00000487602 ABCA10Q8WWZ4 1543 aa13.2□□□□□ -0.3
RBM28-206ENST00000487602 IFT140Q96RY7 1462 aa13.18□□□□□ -0.3
RBM28-206ENST00000487602 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
RBM28-206ENST00000487602 KIF27Q86VH2 1401 aa13.18□□□□□ -0.3
RBM28-206ENST00000487602 EIF4G3O43432 1585 aaKnown RBP13.15□□□□□ -0.3
RBM28-206ENST00000487602 ABCA5Q8WWZ7 1642 aa13.15□□□□□ -0.3
RBM28-206ENST00000487602 TDRD9Q8NDG6 1382 aaKnown RBP13.14□□□□□ -0.31
RBM28-206ENST00000487602 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
RBM28-206ENST00000487602 IGF1RP08069 1367 aa13.11□□□□□ -0.31
RBM28-206ENST00000487602 AQRO60306 1485 aaKnown RBP eCLIP13.09□□□□□ -0.31
RBM28-206ENST00000487602 GAPVD1Q14C86 1478 aa13.09□□□□□ -0.31
RBM28-206ENST00000487602 ZNF608Q9ULD9 1512 aaPredicted RBP13.08□□□□□ -0.31
RBM28-206ENST00000487602 LOC105371045A0A1W2PR82 267 aa13.08□□□□□ -0.32
RBM28-206ENST00000487602 FOXD1Q16676 465 aa13.04□□□□□ -0.32
RBM28-206ENST00000487602 CARMIL1Q5VZK9 1371 aa13.04□□□□□ -0.32
RBM28-206ENST00000487602 PRXQ9BXM0 1461 aa13.04□□□□□ -0.32
RBM28-206ENST00000487602 ERICH3Q5RHP9 1530 aa13.03□□□□□ -0.32
RBM28-206ENST00000487602 GRIN2BQ13224 1484 aa13.03□□□□□ -0.32
RBM28-206ENST00000487602 CUL7Q14999 1698 aa13.02□□□□□ -0.32
RBM28-206ENST00000487602 EHMT2Q96KQ7 1210 aa13.02□□□□□ -0.33
RBM28-206ENST00000487602 ADAMTS12P58397 1594 aa13□□□□□ -0.33
RBM28-206ENST00000487602 KIF21BO75037 1637 aa12.99□□□□□ -0.33
RBM28-206ENST00000487602 GOLGA3Q08378 1498 aa12.98□□□□□ -0.33
RBM28-206ENST00000487602 RAPGEF2Q9Y4G8 1499 aa12.97□□□□□ -0.33
RBM28-206ENST00000487602 UBTFP17480 764 aaKnown RBP12.97□□□□□ -0.33
RBM28-206ENST00000487602 MAGI1Q96QZ7 1491 aaPredicted RBP12.97□□□□□ -0.33
RBM28-206ENST00000487602 SNAPC4Q5SXM2 1469 aa12.96□□□□□ -0.34
RBM28-206ENST00000487602 FHAD1B1AJZ9 1412 aa12.96□□□□□ -0.34
RBM28-206ENST00000487602 TNIKQ9UKE5 1360 aa12.94□□□□□ -0.34
RBM28-206ENST00000487602 CHD1O14646 1710 aa12.93□□□□□ -0.34
RBM28-206ENST00000487602 PLPPR3Q6T4P5 718 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms