RNA–Protein interactions for RNA: ENST00000487300.1

SRM-205, Transcript of spermidine synthase, humanhuman

TSL 2

Gene SRM, Length 611 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-205ENST00000487300 NISCHQ9Y2I1 1504 aa55.96■■■■■ 6.55
SRM-205ENST00000487300 CCDC180Q9P1Z9 1646 aa50.21■■■■■ 5.63
SRM-205ENST00000487300 ABCC9O60706 1549 aa49.4■■■■■ 5.5
SRM-205ENST00000487300 RB1CC1Q8TDY2 1594 aa47.4■■■■■ 5.18
SRM-205ENST00000487300 NACADO15069 1562 aa47.2■■■■■ 5.15
SRM-205ENST00000487300 MYO15BQ96JP2 1530 aa46.81■■■■■ 5.08
SRM-205ENST00000487300 DCAF8L2P0C7V8 631 aa46.56■■■■■ 5.04
SRM-205ENST00000487300 ZCCHC6Q5VYS8 1495 aaKnown RBP46.54■■■■■ 5.04
SRM-205ENST00000487300 UNC13AQ9UPW8 1703 aa46.54■■■■■ 5.04
SRM-205ENST00000487300 DCAF1Q9Y4B6 1507 aa46.37■■■■■ 5.01
SRM-205ENST00000487300 BICRAQ9NZM4 1560 aa46.07■■■■■ 4.97
SRM-205ENST00000487300 PABPN1Q86U42 306 aaKnown RBP eCLIP45.91■■■■■ 4.94
SRM-205ENST00000487300 DNAJC5BQ9UF47 199 aa45.85■■■■■ 4.93
SRM-205ENST00000487300 SCRIBQ14160 1630 aa45.57■■■■■ 4.89
SRM-205ENST00000487300 SHROOM4Q9ULL8 1493 aa45.54■■■■■ 4.88
SRM-205ENST00000487300 EIF4G1Q04637 1599 aaKnown RBP44.84■■■■■ 4.77
SRM-205ENST00000487300 CC2D2AQ9P2K1 1620 aa44.79■■■■■ 4.76
SRM-205ENST00000487300 CECR2Q9BXF3 1484 aa44.48■■■■■ 4.71
SRM-205ENST00000487300 SMARCA4P51532 1647 aa43.61■■■■■ 4.57
SRM-205ENST00000487300 NCAPD3P42695 1498 aa43.51■■■■■ 4.56
SRM-205ENST00000487300 ATAD2BQ9ULI0 1458 aa43.44■■■■■ 4.54
SRM-205ENST00000487300 BAZ1AQ9NRL2 1556 aaPredicted RBP43.42■■■■■ 4.54
SRM-205ENST00000487300 SMARCA2P51531 1590 aa43.39■■■■■ 4.54
SRM-205ENST00000487300 HMGXB3Q12766 1538 aa43.34■■■■■ 4.53
SRM-205ENST00000487300 PEG3Q9GZU2 1588 aa43.27■■■■■ 4.52
SRM-205ENST00000487300 MROH2BQ7Z745 1585 aa43.1■■■■■ 4.49
SRM-205ENST00000487300 BAZ1BQ9UIG0 1483 aaKnown RBP43.01■■■■■ 4.48
SRM-205ENST00000487300 WIZO95785 1651 aa42.65■■■■■ 4.42
SRM-205ENST00000487300 NESP48681 1621 aa42.62■■■■■ 4.41
SRM-205ENST00000487300 ERCC6Q03468 1493 aa42.58■■■■■ 4.41
SRM-205ENST00000487300 LAMC3Q9Y6N6 1575 aa42.54■■■■■ 4.4
SRM-205ENST00000487300 CUX2O14529 1486 aa42.49■■■■■ 4.39
SRM-205ENST00000487300 RSF1Q96T23 1441 aaPredicted RBP42.33■■■■■ 4.37
SRM-205ENST00000487300 THOC2Q8NI27 1593 aaKnown RBP42.28■■■■■ 4.36
SRM-205ENST00000487300 KIF21AQ7Z4S6 1674 aa42.27■■■■■ 4.36
SRM-205ENST00000487300 TOP2AP11388 1531 aaKnown RBP42.15■■■■■ 4.34
SRM-205ENST00000487300 CADPSQ9ULU8 1353 aa42.13■■■■■ 4.33
SRM-205ENST00000487300 PDS5BQ9NTI5 1447 aa42.12■■■■■ 4.33
SRM-205ENST00000487300 CFTRP13569 1480 aa41.84■■■■■ 4.29
SRM-205ENST00000487300 MRC2Q9UBG0 1479 aa41.79■■■■■ 4.28
SRM-205ENST00000487300 WDR62O43379 1518 aa41.76■■■■■ 4.28
SRM-205ENST00000487300 DNAJC5Q9H3Z4 198 aa41.76■■■■■ 4.28
SRM-205ENST00000487300 PRDM2Q13029 1718 aa41.73■■■■■ 4.27
SRM-205ENST00000487300 CEP164Q9UPV0 1460 aa41.71■■■■■ 4.27
SRM-205ENST00000487300 FANCD2Q9BXW9 1451 aa41.68■■■■■ 4.26
SRM-205ENST00000487300 CCDC88BA6NC98 1476 aa41.57■■■■■ 4.25
SRM-205ENST00000487300 URB2Q14146 1524 aaKnown RBP41.37■■■■■ 4.21
SRM-205ENST00000487300 TOPBP1Q92547 1522 aa40.99■■■■■ 4.15
SRM-205ENST00000487300 DNMBPQ6XZF7 1577 aa40.95■■■■■ 4.15
SRM-205ENST00000487300 ABCC8Q09428 1581 aa40.94■■■■■ 4.14
SRM-205ENST00000487300 IFT140Q96RY7 1462 aa40.85■■■■■ 4.13
SRM-205ENST00000487300 ZNF608Q9ULD9 1512 aaPredicted RBP40.72■■■■■ 4.11
SRM-205ENST00000487300 TARBP1Q13395 1621 aaKnown RBP40.71■■■■■ 4.11
SRM-205ENST00000487300 EIF4G3O43432 1585 aaKnown RBP40.66■■■■■ 4.1
SRM-205ENST00000487300 POLA1P09884 1462 aaPredicted RBP40.6■■■■■ 4.09
SRM-205ENST00000487300 SUPT5HO00267 1087 aaKnown RBP40.51■■■■■ 4.08
SRM-205ENST00000487300 CUX1P39880 1505 aa40.48■■■■■ 4.07
SRM-205ENST00000487300 OSCARQ8IYS5 282 aa40.41■■■■■ 4.06
SRM-205ENST00000487300 FGD5Q6ZNL6 1462 aa40.4■■■■■ 4.06
SRM-205ENST00000487300 WDR97A6NE52 1622 aa40.38■■■■■ 4.05
SRM-205ENST00000487300 RAD54L2Q9Y4B4 1467 aa40.36■■■■■ 4.05
SRM-205ENST00000487300 AQRO60306 1485 aaKnown RBP eCLIP40.35■■■■■ 4.053e-6■■■■□ 23.9
SRM-205ENST00000487300 SOGA1O94964 1423 aa40.31■■■■■ 4.04
SRM-205ENST00000487300 CHD1O14646 1710 aa40.3■■■■■ 4.04
SRM-205ENST00000487300 TDRD9Q8NDG6 1382 aaKnown RBP40.13■■■■■ 4.02
SRM-205ENST00000487300 RIMBP3CA6NJZ7 1639 aa40.09■■■■■ 4.01
SRM-205ENST00000487300 RIMBP3BA6NNM3 1639 aa40.09■■■■■ 4.01
SRM-205ENST00000487300 RIMBP3Q9UFD9 1639 aa40.09■■■■■ 4.01
SRM-205ENST00000487300 BIVM-ERCC5R4GMW8 1640 aa40.09■■■■■ 4.01
SRM-205ENST00000487300 PBRM1Q86U86 1689 aa40.05■■■■■ 4
SRM-205ENST00000487300 TOP2BQ02880 1626 aa40.02■■■■■ 4
SRM-205ENST00000487300 SNAPC4Q5SXM2 1469 aa40.02■■■■■ 4
SRM-205ENST00000487300 ABCA5Q8WWZ7 1642 aa40.02■■■■■ 4
SRM-205ENST00000487300 ABCA10Q8WWZ4 1543 aa40.01■■■■■ 4
SRM-205ENST00000487300 MAGI1Q96QZ7 1491 aaPredicted RBP40■■■■□ 3.99
SRM-205ENST00000487300 GRIN2BQ13224 1484 aa39.99■■■■□ 3.99
SRM-205ENST00000487300 SYNJ1O43426 1573 aa39.97■■■■□ 3.99
SRM-205ENST00000487300 ARHGEF11O15085 1522 aa39.96■■■■□ 3.99
SRM-205ENST00000487300 TRIM41Q8WV44 630 aa39.95■■■■□ 3.99
SRM-205ENST00000487300 WRNQ14191 1432 aaPredicted RBP eCLIP39.9■■■■□ 3.98
SRM-205ENST00000487300 GAPVD1Q14C86 1478 aa39.89■■■■□ 3.98
SRM-205ENST00000487300 SYNJ2O15056 1496 aa39.82■■■■□ 3.97
SRM-205ENST00000487300 CLASP1Q7Z460 1538 aa39.82■■■■□ 3.97
SRM-205ENST00000487300 FBLN2P98095 1184 aa39.78■■■■□ 3.96
SRM-205ENST00000487300 ADAMTS12P58397 1594 aa39.64■■■■□ 3.94
SRM-205ENST00000487300 CHMP7Q8WUX9 453 aaPredicted RBP39.64■■■■□ 3.94
SRM-205ENST00000487300 ARAP1Q96P48 1450 aa39.61■■■■□ 3.93
SRM-205ENST00000487300 ERICH3Q5RHP9 1530 aa39.55■■■■□ 3.92
SRM-205ENST00000487300 GRIN2AQ12879 1464 aa39.51■■■■□ 3.92
SRM-205ENST00000487300 FHAD1B1AJZ9 1412 aa39.41■■■■□ 3.9
SRM-205ENST00000487300 CEP170Q5SW79 1584 aa39.4■■■■□ 3.9
SRM-205ENST00000487300 CYB5RLQ6IPT4 315 aa39.38■■■■□ 3.89
SRM-205ENST00000487300 NUP160Q12769 1436 aa39.38■■■■□ 3.89
SRM-205ENST00000487300 SHROOM2Q13796 1616 aa39.28■■■■□ 3.88
SRM-205ENST00000487300 ERCC6L2Q5T890 1561 aa39.16■■■■□ 3.86
SRM-205ENST00000487300 CUL7Q14999 1698 aa39.13■■■■□ 3.85
SRM-205ENST00000487300 RUSC2Q8N2Y8 1516 aa39.09■■■■□ 3.85
SRM-205ENST00000487300 KIF27Q86VH2 1401 aa39.09■■■■□ 3.85
SRM-205ENST00000487300 IGF1RP08069 1367 aa39■■■■□ 3.83
SRM-205ENST00000487300 PRG4Q92954 1404 aaPredicted RBP38.83■■■■□ 3.81
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms