RNA–Protein interactions for RNA: ENST00000487118.1

NUDCD3-209, Transcript of NudC domain containing 3, humanhuman

TSL 3

Gene NUDCD3, Length 314 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-209ENST00000487118 NISCHQ9Y2I1 1504 aa19.75■□□□□ 0.75
NUDCD3-209ENST00000487118 CCDC180Q9P1Z9 1646 aa17.29■□□□□ 0.36
NUDCD3-209ENST00000487118 ABCC9O60706 1549 aa17.19■□□□□ 0.34
NUDCD3-209ENST00000487118 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
NUDCD3-209ENST00000487118 ZCCHC6Q5VYS8 1495 aaKnown RBP16.6■□□□□ 0.25
NUDCD3-209ENST00000487118 DNAJC5Q9H3Z4 198 aa16.53■□□□□ 0.24
NUDCD3-209ENST00000487118 DCAF1Q9Y4B6 1507 aa16.39■□□□□ 0.21
NUDCD3-209ENST00000487118 MYO15BQ96JP2 1530 aa16.23■□□□□ 0.19
NUDCD3-209ENST00000487118 DCAF8L2P0C7V8 631 aa16.15■□□□□ 0.18
NUDCD3-209ENST00000487118 NACADO15069 1562 aa16.1■□□□□ 0.17
NUDCD3-209ENST00000487118 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
NUDCD3-209ENST00000487118 PABPN1Q86U42 306 aaKnown RBP eCLIP16■□□□□ 0.15
NUDCD3-209ENST00000487118 UNC13AQ9UPW8 1703 aa15.97■□□□□ 0.15
NUDCD3-209ENST00000487118 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
NUDCD3-209ENST00000487118 SCRIBQ14160 1630 aa15.8■□□□□ 0.12
NUDCD3-209ENST00000487118 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
NUDCD3-209ENST00000487118 TRIM41Q8WV44 630 aa15.59■□□□□ 0.09
NUDCD3-209ENST00000487118 CECR2Q9BXF3 1484 aa15.5■□□□□ 0.07
NUDCD3-209ENST00000487118 CC2D2AQ9P2K1 1620 aa15.5■□□□□ 0.07
NUDCD3-209ENST00000487118 EIF4G1Q04637 1599 aaKnown RBP15.33■□□□□ 0.05
NUDCD3-209ENST00000487118 SUPT5HO00267 1087 aaKnown RBP15.29■□□□□ 0.04
NUDCD3-209ENST00000487118 RSF1Q96T23 1441 aaPredicted RBP15.28■□□□□ 0.04
NUDCD3-209ENST00000487118 BAZ1AQ9NRL2 1556 aaPredicted RBP15.25■□□□□ 0.03
NUDCD3-209ENST00000487118 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
NUDCD3-209ENST00000487118 SMARCA4P51532 1647 aa15.19■□□□□ 0.02
NUDCD3-209ENST00000487118 WIZO95785 1651 aa15.09■□□□□ 0.01
NUDCD3-209ENST00000487118 CUX2O14529 1486 aa15.08■□□□□ 0.01
NUDCD3-209ENST00000487118 PEG3Q9GZU2 1588 aa15.05■□□□□ -0
NUDCD3-209ENST00000487118 AEBP2Q6ZN18 517 aaPredicted RBP14.99□□□□□ -0.01
NUDCD3-209ENST00000487118 TOP2AP11388 1531 aaKnown RBP14.97□□□□□ -0.01
NUDCD3-209ENST00000487118 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
NUDCD3-209ENST00000487118 SMARCA2P51531 1590 aa14.95□□□□□ -0.02
NUDCD3-209ENST00000487118 ERCC6Q03468 1493 aa14.89□□□□□ -0.03
NUDCD3-209ENST00000487118 NCAPD3P42695 1498 aa14.85□□□□□ -0.03
NUDCD3-209ENST00000487118 BAZ1BQ9UIG0 1483 aaKnown RBP14.84□□□□□ -0.03
NUDCD3-209ENST00000487118 HMGXB3Q12766 1538 aa14.84□□□□□ -0.03
NUDCD3-209ENST00000487118 CCDC88BA6NC98 1476 aa14.79□□□□□ -0.04
NUDCD3-209ENST00000487118 NESP48681 1621 aa14.71□□□□□ -0.05
NUDCD3-209ENST00000487118 CHIC1Q5VXU3 224 aa14.67□□□□□ -0.06
NUDCD3-209ENST00000487118 THOC2Q8NI27 1593 aaKnown RBP14.55□□□□□ -0.08
NUDCD3-209ENST00000487118 KIF21AQ7Z4S6 1674 aa14.53□□□□□ -0.08
NUDCD3-209ENST00000487118 TRHP20396 242 aaPredicted RBP14.53□□□□□ -0.08
NUDCD3-209ENST00000487118 ILDR1Q86SU0 546 aaPredicted RBP14.52□□□□□ -0.09
NUDCD3-209ENST00000487118 CFTRP13569 1480 aa14.5□□□□□ -0.09
NUDCD3-209ENST00000487118 CADPSQ9ULU8 1353 aa14.44□□□□□ -0.1
NUDCD3-209ENST00000487118 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
NUDCD3-209ENST00000487118 ABCC8Q09428 1581 aa14.43□□□□□ -0.1
NUDCD3-209ENST00000487118 LAMC3Q9Y6N6 1575 aa14.4□□□□□ -0.1
NUDCD3-209ENST00000487118 WRNQ14191 1432 aaPredicted RBP eCLIP14.37□□□□□ -0.11
NUDCD3-209ENST00000487118 OSCARQ8IYS5 282 aa14.35□□□□□ -0.11
NUDCD3-209ENST00000487118 SYNJ1O43426 1573 aa14.32□□□□□ -0.12
NUDCD3-209ENST00000487118 PDS5BQ9NTI5 1447 aa14.3□□□□□ -0.12
NUDCD3-209ENST00000487118 TOP2BQ02880 1626 aa14.29□□□□□ -0.12
NUDCD3-209ENST00000487118 BIVM-ERCC5R4GMW8 1640 aa14.29□□□□□ -0.12
NUDCD3-209ENST00000487118 FANCD2Q9BXW9 1451 aa14.27□□□□□ -0.12
NUDCD3-209ENST00000487118 CUX1P39880 1505 aa14.25□□□□□ -0.13
NUDCD3-209ENST00000487118 RIMBP3CA6NJZ7 1639 aa14.24□□□□□ -0.13
NUDCD3-209ENST00000487118 RIMBP3BA6NNM3 1639 aa14.24□□□□□ -0.13
NUDCD3-209ENST00000487118 RIMBP3Q9UFD9 1639 aa14.24□□□□□ -0.13
NUDCD3-209ENST00000487118 MRC2Q9UBG0 1479 aa14.23□□□□□ -0.13
NUDCD3-209ENST00000487118 CYB5RLQ6IPT4 315 aa14.21□□□□□ -0.13
NUDCD3-209ENST00000487118 WDR62O43379 1518 aa14.2□□□□□ -0.14
NUDCD3-209ENST00000487118 CEP164Q9UPV0 1460 aa14.19□□□□□ -0.14
NUDCD3-209ENST00000487118 EEA1Q15075 1411 aa14.17□□□□□ -0.14
NUDCD3-209ENST00000487118 DNMBPQ6XZF7 1577 aa14.17□□□□□ -0.14
NUDCD3-209ENST00000487118 SOGA1O94964 1423 aa14.15□□□□□ -0.14
NUDCD3-209ENST00000487118 TOPBP1Q92547 1522 aa14.12□□□□□ -0.15
NUDCD3-209ENST00000487118 URB2Q14146 1524 aaKnown RBP14.1□□□□□ -0.15
NUDCD3-209ENST00000487118 RUSC2Q8N2Y8 1516 aa14.1□□□□□ -0.15
NUDCD3-209ENST00000487118 FAM9AQ8IZU1 332 aaPredicted RBP14.1□□□□□ -0.15
NUDCD3-209ENST00000487118 FGD5Q6ZNL6 1462 aa14.1□□□□□ -0.15
NUDCD3-209ENST00000487118 ARHGEF11O15085 1522 aa14.05□□□□□ -0.16
NUDCD3-209ENST00000487118 LOC105371045A0A1W2PR82 267 aa14.05□□□□□ -0.16
NUDCD3-209ENST00000487118 POLA1P09884 1462 aaPredicted RBP14.05□□□□□ -0.16
NUDCD3-209ENST00000487118 CSRNP3Q8WYN3 585 aa14.04□□□□□ -0.16
NUDCD3-209ENST00000487118 KIF27Q86VH2 1401 aa14.01□□□□□ -0.17
NUDCD3-209ENST00000487118 ABCA10Q8WWZ4 1543 aa14□□□□□ -0.17
NUDCD3-209ENST00000487118 KIF21BO75037 1637 aa13.99□□□□□ -0.17
NUDCD3-209ENST00000487118 WDR97A6NE52 1622 aa13.97□□□□□ -0.17
NUDCD3-209ENST00000487118 RAD54L2Q9Y4B4 1467 aa13.97□□□□□ -0.17
NUDCD3-209ENST00000487118 ZNF608Q9ULD9 1512 aaPredicted RBP13.96□□□□□ -0.17
NUDCD3-209ENST00000487118 GOLGA3Q08378 1498 aa13.95□□□□□ -0.18
NUDCD3-209ENST00000487118 TARBP1Q13395 1621 aaKnown RBP13.93□□□□□ -0.18
NUDCD3-209ENST00000487118 PRXQ9BXM0 1461 aa13.93□□□□□ -0.18
NUDCD3-209ENST00000487118 ERICH3Q5RHP9 1530 aa13.91□□□□□ -0.18
NUDCD3-209ENST00000487118 IGF1RP08069 1367 aa13.9□□□□□ -0.18
NUDCD3-209ENST00000487118 ABCA5Q8WWZ7 1642 aa13.9□□□□□ -0.19
NUDCD3-209ENST00000487118 TNIKQ9UKE5 1360 aa13.89□□□□□ -0.19
NUDCD3-209ENST00000487118 CHD1O14646 1710 aa13.88□□□□□ -0.19
NUDCD3-209ENST00000487118 IFT140Q96RY7 1462 aa13.87□□□□□ -0.19
NUDCD3-209ENST00000487118 RAPGEF2Q9Y4G8 1499 aa13.87□□□□□ -0.19
NUDCD3-209ENST00000487118 EHMT2Q96KQ7 1210 aa13.84□□□□□ -0.19
NUDCD3-209ENST00000487118 GAPVD1Q14C86 1478 aa13.84□□□□□ -0.19
NUDCD3-209ENST00000487118 ARAP1Q96P48 1450 aa13.84□□□□□ -0.19
NUDCD3-209ENST00000487118 CUL7Q14999 1698 aa13.82□□□□□ -0.2
NUDCD3-209ENST00000487118 EIF4G3O43432 1585 aaKnown RBP13.82□□□□□ -0.2
NUDCD3-209ENST00000487118 CARMIL1Q5VZK9 1371 aa13.82□□□□□ -0.2
NUDCD3-209ENST00000487118 TDRD9Q8NDG6 1382 aaKnown RBP13.82□□□□□ -0.2
NUDCD3-209ENST00000487118 UBTFP17480 764 aaKnown RBP13.79□□□□□ -0.2
NUDCD3-209ENST00000487118 CEP162Q5TB80 1403 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms