RNA–Protein interactions for RNA: ENST00000486335.1

CCDC142-208, Transcript of coiled-coil domain containing 142, humanhuman

TSL 5

Gene CCDC142, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC142-208ENST00000486335 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
CCDC142-208ENST00000486335 ABCC9O60706 1549 aa21.86■■□□□ 1.09
CCDC142-208ENST00000486335 CCDC180Q9P1Z9 1646 aa21.29■■□□□ 1
CCDC142-208ENST00000486335 DNAJC5BQ9UF47 199 aa21.12■□□□□ 0.97
CCDC142-208ENST00000486335 RB1CC1Q8TDY2 1594 aa20.51■□□□□ 0.87
CCDC142-208ENST00000486335 PABPN1Q86U42 306 aaKnown RBP eCLIP20.38■□□□□ 0.85
CCDC142-208ENST00000486335 NACADO15069 1562 aa20.31■□□□□ 0.84
CCDC142-208ENST00000486335 DCAF8L2P0C7V8 631 aa20.18■□□□□ 0.82
CCDC142-208ENST00000486335 BICRAQ9NZM4 1560 aa20.09■□□□□ 0.81
CCDC142-208ENST00000486335 UNC13AQ9UPW8 1703 aa20.06■□□□□ 0.8
CCDC142-208ENST00000486335 MYO15BQ96JP2 1530 aa19.93■□□□□ 0.78
CCDC142-208ENST00000486335 CECR2Q9BXF3 1484 aa19.72■□□□□ 0.75
CCDC142-208ENST00000486335 CC2D2AQ9P2K1 1620 aa19.69■□□□□ 0.74
CCDC142-208ENST00000486335 SHROOM4Q9ULL8 1493 aa19.6■□□□□ 0.73
CCDC142-208ENST00000486335 DNAJC5Q9H3Z4 198 aa19.57■□□□□ 0.72
CCDC142-208ENST00000486335 EIF4G1Q04637 1599 aaKnown RBP19.55■□□□□ 0.72
CCDC142-208ENST00000486335 ZCCHC6Q5VYS8 1495 aaKnown RBP19.54■□□□□ 0.72
CCDC142-208ENST00000486335 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
CCDC142-208ENST00000486335 SCRIBQ14160 1630 aa19.44■□□□□ 0.7
CCDC142-208ENST00000486335 CUX2O14529 1486 aa18.95■□□□□ 0.62
CCDC142-208ENST00000486335 NCAPD3P42695 1498 aa18.86■□□□□ 0.61
CCDC142-208ENST00000486335 ERCC6Q03468 1493 aa18.79■□□□□ 0.6
CCDC142-208ENST00000486335 ATAD2BQ9ULI0 1458 aa18.74■□□□□ 0.59
CCDC142-208ENST00000486335 NESP48681 1621 aa18.72■□□□□ 0.59
CCDC142-208ENST00000486335 HMGXB3Q12766 1538 aa18.57■□□□□ 0.56
CCDC142-208ENST00000486335 SMARCA2P51531 1590 aa18.53■□□□□ 0.56
CCDC142-208ENST00000486335 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
CCDC142-208ENST00000486335 THOC2Q8NI27 1593 aaKnown RBP18.51■□□□□ 0.55
CCDC142-208ENST00000486335 TRIM41Q8WV44 630 aa18.44■□□□□ 0.54
CCDC142-208ENST00000486335 BAZ1BQ9UIG0 1483 aaKnown RBP18.43■□□□□ 0.54
CCDC142-208ENST00000486335 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
CCDC142-208ENST00000486335 LAMC3Q9Y6N6 1575 aa18.36■□□□□ 0.53
CCDC142-208ENST00000486335 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
CCDC142-208ENST00000486335 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
CCDC142-208ENST00000486335 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
CCDC142-208ENST00000486335 PDS5BQ9NTI5 1447 aa18.31■□□□□ 0.52
CCDC142-208ENST00000486335 CADPSQ9ULU8 1353 aa18.26■□□□□ 0.51
CCDC142-208ENST00000486335 MRC2Q9UBG0 1479 aa18.19■□□□□ 0.5
CCDC142-208ENST00000486335 WDR62O43379 1518 aa18.17■□□□□ 0.5
CCDC142-208ENST00000486335 OSCARQ8IYS5 282 aa18.08■□□□□ 0.48
CCDC142-208ENST00000486335 FANCD2Q9BXW9 1451 aa18.01■□□□□ 0.47
CCDC142-208ENST00000486335 WIZO95785 1651 aa18■□□□□ 0.47
CCDC142-208ENST00000486335 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
CCDC142-208ENST00000486335 CFTRP13569 1480 aa17.96■□□□□ 0.47
CCDC142-208ENST00000486335 URB2Q14146 1524 aaKnown RBP17.93■□□□□ 0.46
CCDC142-208ENST00000486335 RIMBP3CA6NJZ7 1639 aa17.83■□□□□ 0.45
CCDC142-208ENST00000486335 RIMBP3BA6NNM3 1639 aa17.83■□□□□ 0.45
CCDC142-208ENST00000486335 RIMBP3Q9UFD9 1639 aa17.83■□□□□ 0.45
CCDC142-208ENST00000486335 ZNF608Q9ULD9 1512 aaPredicted RBP17.81■□□□□ 0.44
CCDC142-208ENST00000486335 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
CCDC142-208ENST00000486335 ARHGEF11O15085 1522 aa17.77■□□□□ 0.43
CCDC142-208ENST00000486335 CYB5RLQ6IPT4 315 aa17.72■□□□□ 0.43
CCDC142-208ENST00000486335 TOP2AP11388 1531 aaKnown RBP17.71■□□□□ 0.43
CCDC142-208ENST00000486335 IFT140Q96RY7 1462 aa17.69■□□□□ 0.42
CCDC142-208ENST00000486335 TOPBP1Q92547 1522 aa17.62■□□□□ 0.41
CCDC142-208ENST00000486335 CCDC88BA6NC98 1476 aa17.61■□□□□ 0.41
CCDC142-208ENST00000486335 ARAP1Q96P48 1450 aa17.61■□□□□ 0.41
CCDC142-208ENST00000486335 AQRO60306 1485 aaKnown RBP eCLIP17.58■□□□□ 0.418e-7■■■□□ 17.5
CCDC142-208ENST00000486335 TRHP20396 242 aaPredicted RBP17.55■□□□□ 0.4
CCDC142-208ENST00000486335 EIF4G3O43432 1585 aaKnown RBP17.53■□□□□ 0.4
CCDC142-208ENST00000486335 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
CCDC142-208ENST00000486335 TARBP1Q13395 1621 aaKnown RBP17.5■□□□□ 0.39
CCDC142-208ENST00000486335 FBLN2P98095 1184 aa17.47■□□□□ 0.39
CCDC142-208ENST00000486335 ABCC8Q09428 1581 aa17.47■□□□□ 0.39
CCDC142-208ENST00000486335 DNMBPQ6XZF7 1577 aa17.46■□□□□ 0.39
CCDC142-208ENST00000486335 CHD1O14646 1710 aa17.46■□□□□ 0.39
CCDC142-208ENST00000486335 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
CCDC142-208ENST00000486335 RAD54L2Q9Y4B4 1467 aa17.43■□□□□ 0.38
CCDC142-208ENST00000486335 TDRD9Q8NDG6 1382 aaKnown RBP17.41■□□□□ 0.38
CCDC142-208ENST00000486335 CLASP1Q7Z460 1538 aa17.35■□□□□ 0.37
CCDC142-208ENST00000486335 SOGA1O94964 1423 aa17.34■□□□□ 0.37
CCDC142-208ENST00000486335 SNAPC4Q5SXM2 1469 aa17.31■□□□□ 0.36
CCDC142-208ENST00000486335 AEBP2Q6ZN18 517 aaPredicted RBP17.29■□□□□ 0.36
CCDC142-208ENST00000486335 CHMP7Q8WUX9 453 aaPredicted RBP17.27■□□□□ 0.36
CCDC142-208ENST00000486335 FGD5Q6ZNL6 1462 aa17.24■□□□□ 0.35
CCDC142-208ENST00000486335 MAGI1Q96QZ7 1491 aaPredicted RBP17.21■□□□□ 0.35
CCDC142-208ENST00000486335 CUX1P39880 1505 aa17.21■□□□□ 0.34
CCDC142-208ENST00000486335 SYNJ2O15056 1496 aa17.19■□□□□ 0.34
CCDC142-208ENST00000486335 GRIN2BQ13224 1484 aa17.19■□□□□ 0.34
CCDC142-208ENST00000486335 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
CCDC142-208ENST00000486335 GAPVD1Q14C86 1478 aa17.18■□□□□ 0.34
CCDC142-208ENST00000486335 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
CCDC142-208ENST00000486335 ERCC6L2Q5T890 1561 aa17.12■□□□□ 0.33
CCDC142-208ENST00000486335 ABCA10Q8WWZ4 1543 aa17.03■□□□□ 0.32
CCDC142-208ENST00000486335 ABCA5Q8WWZ7 1642 aa17■□□□□ 0.31
CCDC142-208ENST00000486335 NUP160Q12769 1436 aa17■□□□□ 0.31
CCDC142-208ENST00000486335 PBRM1Q86U86 1689 aa17■□□□□ 0.31
CCDC142-208ENST00000486335 GRIN2AQ12879 1464 aa16.99■□□□□ 0.31
CCDC142-208ENST00000486335 CEP170Q5SW79 1584 aa16.98■□□□□ 0.31
CCDC142-208ENST00000486335 SHROOM2Q13796 1616 aa16.9■□□□□ 0.3
CCDC142-208ENST00000486335 KIF13AQ9H1H9 1805 aa16.88■□□□□ 0.29
CCDC142-208ENST00000486335 ADAMTS12P58397 1594 aa16.88■□□□□ 0.29
CCDC142-208ENST00000486335 KDM4FA0A1W2PPD8 638 aa16.87■□□□□ 0.29
CCDC142-208ENST00000486335 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
CCDC142-208ENST00000486335 JPH4Q96JJ6 628 aa16.85■□□□□ 0.29
CCDC142-208ENST00000486335 WRNQ14191 1432 aaPredicted RBP eCLIP16.85■□□□□ 0.29
CCDC142-208ENST00000486335 PRG4Q92954 1404 aaPredicted RBP16.84■□□□□ 0.29
CCDC142-208ENST00000486335 FAM69CQ0P6D2 419 aa16.83■□□□□ 0.28
CCDC142-208ENST00000486335 ABCC10Q5T3U5 1492 aa16.81■□□□□ 0.28
CCDC142-208ENST00000486335 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms