RNA–Protein interactions for RNA: ENST00000486308.1

APH1A-207, Transcript of aph-1 homolog A, gamma-secretase subunit, humanhuman

TSL 3

Gene APH1A, Length 574 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APH1A-207ENST00000486308 NISCHQ9Y2I1 1504 aa18.08■□□□□ 0.49
APH1A-207ENST00000486308 CCDC180Q9P1Z9 1646 aa16.05■□□□□ 0.16
APH1A-207ENST00000486308 ABCC9O60706 1549 aa15.66■□□□□ 0.1
APH1A-207ENST00000486308 ZCCHC6Q5VYS8 1495 aaKnown RBP15.09■□□□□ 0.01
APH1A-207ENST00000486308 NACADO15069 1562 aa15.07■□□□□ 0
APH1A-207ENST00000486308 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
APH1A-207ENST00000486308 MYO15BQ96JP2 1530 aa15.02■□□□□ -0
APH1A-207ENST00000486308 DCAF8L2P0C7V8 631 aa15.02■□□□□ -0
APH1A-207ENST00000486308 DCAF1Q9Y4B6 1507 aa14.98□□□□□ -0.01
APH1A-207ENST00000486308 UNC13AQ9UPW8 1703 aa14.73□□□□□ -0.05
APH1A-207ENST00000486308 BICRAQ9NZM4 1560 aa14.65□□□□□ -0.06
APH1A-207ENST00000486308 SCRIBQ14160 1630 aa14.65□□□□□ -0.06
APH1A-207ENST00000486308 PABPN1Q86U42 306 aaKnown RBP eCLIP14.63□□□□□ -0.07
APH1A-207ENST00000486308 SHROOM4Q9ULL8 1493 aa14.5□□□□□ -0.09
APH1A-207ENST00000486308 DNAJC5BQ9UF47 199 aa14.34□□□□□ -0.11
APH1A-207ENST00000486308 EIF4G1Q04637 1599 aaKnown RBP14.25□□□□□ -0.13
APH1A-207ENST00000486308 CC2D2AQ9P2K1 1620 aa14.16□□□□□ -0.14
APH1A-207ENST00000486308 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
APH1A-207ENST00000486308 SMARCA4P51532 1647 aa14.02□□□□□ -0.16
APH1A-207ENST00000486308 BAZ1AQ9NRL2 1556 aaPredicted RBP14□□□□□ -0.17
APH1A-207ENST00000486308 ATAD2BQ9ULI0 1458 aa13.94□□□□□ -0.18
APH1A-207ENST00000486308 MROH2BQ7Z745 1585 aa13.94□□□□□ -0.18
APH1A-207ENST00000486308 NCAPD3P42695 1498 aa13.93□□□□□ -0.18
APH1A-207ENST00000486308 SMARCA2P51531 1590 aa13.91□□□□□ -0.18
APH1A-207ENST00000486308 PEG3Q9GZU2 1588 aa13.9□□□□□ -0.18
APH1A-207ENST00000486308 HMGXB3Q12766 1538 aa13.86□□□□□ -0.19
APH1A-207ENST00000486308 BAZ1BQ9UIG0 1483 aaKnown RBP13.81□□□□□ -0.2
APH1A-207ENST00000486308 RSF1Q96T23 1441 aaPredicted RBP13.81□□□□□ -0.2
APH1A-207ENST00000486308 WIZO95785 1651 aa13.78□□□□□ -0.2
APH1A-207ENST00000486308 TOP2AP11388 1531 aaKnown RBP13.65□□□□□ -0.22
APH1A-207ENST00000486308 NESP48681 1621 aa13.57□□□□□ -0.24
APH1A-207ENST00000486308 LAMC3Q9Y6N6 1575 aa13.54□□□□□ -0.24
APH1A-207ENST00000486308 CADPSQ9ULU8 1353 aa13.51□□□□□ -0.25
APH1A-207ENST00000486308 CCDC88BA6NC98 1476 aa13.48□□□□□ -0.25
APH1A-207ENST00000486308 ERCC6Q03468 1493 aa13.48□□□□□ -0.25
APH1A-207ENST00000486308 CFTRP13569 1480 aa13.45□□□□□ -0.26
APH1A-207ENST00000486308 SUPT5HO00267 1087 aaKnown RBP13.44□□□□□ -0.26
APH1A-207ENST00000486308 PDS5BQ9NTI5 1447 aa13.44□□□□□ -0.26
APH1A-207ENST00000486308 KIF21AQ7Z4S6 1674 aa13.4□□□□□ -0.26
APH1A-207ENST00000486308 THOC2Q8NI27 1593 aaKnown RBP13.37□□□□□ -0.27
APH1A-207ENST00000486308 FANCD2Q9BXW9 1451 aa13.36□□□□□ -0.27
APH1A-207ENST00000486308 CUX2O14529 1486 aa13.34□□□□□ -0.27
APH1A-207ENST00000486308 CEP164Q9UPV0 1460 aa13.34□□□□□ -0.27
APH1A-207ENST00000486308 PRDM2Q13029 1718 aa13.32□□□□□ -0.28
APH1A-207ENST00000486308 MRC2Q9UBG0 1479 aa13.31□□□□□ -0.28
APH1A-207ENST00000486308 WDR62O43379 1518 aa13.28□□□□□ -0.28
APH1A-207ENST00000486308 AEBP2Q6ZN18 517 aaPredicted RBP13.24□□□□□ -0.29
APH1A-207ENST00000486308 URB2Q14146 1524 aaKnown RBP13.23□□□□□ -0.29
APH1A-207ENST00000486308 TOPBP1Q92547 1522 aa13.15□□□□□ -0.3
APH1A-207ENST00000486308 DNMBPQ6XZF7 1577 aa13.14□□□□□ -0.31
APH1A-207ENST00000486308 ABCC8Q09428 1581 aa13.13□□□□□ -0.31
APH1A-207ENST00000486308 CUX1P39880 1505 aa13.08□□□□□ -0.32
APH1A-207ENST00000486308 IFT140Q96RY7 1462 aa13.06□□□□□ -0.32
APH1A-207ENST00000486308 POLA1P09884 1462 aaPredicted RBP13.05□□□□□ -0.32
APH1A-207ENST00000486308 FGD5Q6ZNL6 1462 aa13.02□□□□□ -0.33
APH1A-207ENST00000486308 TARBP1Q13395 1621 aaKnown RBP13.02□□□□□ -0.33
APH1A-207ENST00000486308 ZNF608Q9ULD9 1512 aaPredicted RBP13□□□□□ -0.33
APH1A-207ENST00000486308 WRNQ14191 1432 aaPredicted RBP eCLIP13□□□□□ -0.33
APH1A-207ENST00000486308 RAD54L2Q9Y4B4 1467 aa12.98□□□□□ -0.33
APH1A-207ENST00000486308 SYNJ1O43426 1573 aa12.98□□□□□ -0.33
APH1A-207ENST00000486308 SOGA1O94964 1423 aa12.97□□□□□ -0.33
APH1A-207ENST00000486308 TOP2BQ02880 1626 aa12.97□□□□□ -0.33
APH1A-207ENST00000486308 BIVM-ERCC5R4GMW8 1640 aa12.97□□□□□ -0.33
APH1A-207ENST00000486308 CHIC1Q5VXU3 224 aa12.96□□□□□ -0.33
APH1A-207ENST00000486308 EIF4G3O43432 1585 aaKnown RBP12.95□□□□□ -0.34
APH1A-207ENST00000486308 AQRO60306 1485 aaKnown RBP eCLIP12.92□□□□□ -0.34
APH1A-207ENST00000486308 WDR97A6NE52 1622 aa12.91□□□□□ -0.34
APH1A-207ENST00000486308 ABCA10Q8WWZ4 1543 aa12.9□□□□□ -0.34
APH1A-207ENST00000486308 TDRD9Q8NDG6 1382 aaKnown RBP12.9□□□□□ -0.34
APH1A-207ENST00000486308 DNAJC5Q9H3Z4 198 aa12.86□□□□□ -0.35
APH1A-207ENST00000486308 ABCA5Q8WWZ7 1642 aa12.84□□□□□ -0.35
APH1A-207ENST00000486308 GAPVD1Q14C86 1478 aa12.84□□□□□ -0.35
APH1A-207ENST00000486308 GRIN2BQ13224 1484 aa12.83□□□□□ -0.36
APH1A-207ENST00000486308 SNAPC4Q5SXM2 1469 aa12.81□□□□□ -0.36
APH1A-207ENST00000486308 PBRM1Q86U86 1689 aa12.8□□□□□ -0.36
APH1A-207ENST00000486308 MAGI1Q96QZ7 1491 aaPredicted RBP12.79□□□□□ -0.36
APH1A-207ENST00000486308 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
APH1A-207ENST00000486308 CHD1O14646 1710 aa12.75□□□□□ -0.37
APH1A-207ENST00000486308 SYNJ2O15056 1496 aa12.75□□□□□ -0.37
APH1A-207ENST00000486308 ERICH3Q5RHP9 1530 aa12.74□□□□□ -0.37
APH1A-207ENST00000486308 ADAMTS12P58397 1594 aa12.73□□□□□ -0.37
APH1A-207ENST00000486308 FBLN2P98095 1184 aa12.72□□□□□ -0.37
APH1A-207ENST00000486308 KIF27Q86VH2 1401 aa12.71□□□□□ -0.37
APH1A-207ENST00000486308 CHMP7Q8WUX9 453 aaPredicted RBP12.7□□□□□ -0.38
APH1A-207ENST00000486308 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
APH1A-207ENST00000486308 FHAD1B1AJZ9 1412 aa12.69□□□□□ -0.38
APH1A-207ENST00000486308 GRIN2AQ12879 1464 aa12.67□□□□□ -0.38
APH1A-207ENST00000486308 IGF1RP08069 1367 aa12.67□□□□□ -0.38
APH1A-207ENST00000486308 CLASP1Q7Z460 1538 aa12.66□□□□□ -0.38
APH1A-207ENST00000486308 RUSC2Q8N2Y8 1516 aa12.63□□□□□ -0.39
APH1A-207ENST00000486308 NUP160Q12769 1436 aa12.62□□□□□ -0.39
APH1A-207ENST00000486308 CUL7Q14999 1698 aa12.62□□□□□ -0.39
APH1A-207ENST00000486308 CEP170Q5SW79 1584 aa12.61□□□□□ -0.39
APH1A-207ENST00000486308 ARHGEF11O15085 1522 aa12.59□□□□□ -0.39
APH1A-207ENST00000486308 CARMIL1Q5VZK9 1371 aa12.58□□□□□ -0.4
APH1A-207ENST00000486308 RIMBP3CA6NJZ7 1639 aa12.58□□□□□ -0.4
APH1A-207ENST00000486308 RIMBP3BA6NNM3 1639 aa12.58□□□□□ -0.4
APH1A-207ENST00000486308 RIMBP3Q9UFD9 1639 aa12.58□□□□□ -0.4
APH1A-207ENST00000486308 RAPGEF2Q9Y4G8 1499 aa12.52□□□□□ -0.41
APH1A-207ENST00000486308 SHROOM2Q13796 1616 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 727.9 ms