RNA–Protein interactions for RNA: ENST00000485275.2

LRIF1-202, Transcript of ligand dependent nuclear receptor interacting factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LRIF1, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1-202ENST00000485275 NISCHQ9Y2I1 1504 aa34.07■■■■□ 3.04
LRIF1-202ENST00000485275 CCDC180Q9P1Z9 1646 aa29.91■■■□□ 2.38
LRIF1-202ENST00000485275 ZCCHC6Q5VYS8 1495 aaKnown RBP28.58■■■□□ 2.17
LRIF1-202ENST00000485275 ABCC9O60706 1549 aa28.57■■■□□ 2.16
LRIF1-202ENST00000485275 DCAF1Q9Y4B6 1507 aa28.16■■■□□ 2.1
LRIF1-202ENST00000485275 DCAF8L2P0C7V8 631 aa28.07■■■□□ 2.08
LRIF1-202ENST00000485275 MYO15BQ96JP2 1530 aa27.96■■■□□ 2.07
LRIF1-202ENST00000485275 NACADO15069 1562 aa27.88■■■□□ 2.05
LRIF1-202ENST00000485275 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
LRIF1-202ENST00000485275 SHROOM4Q9ULL8 1493 aa27.49■■□□□ 1.99
LRIF1-202ENST00000485275 SCRIBQ14160 1630 aa27.46■■□□□ 1.99
LRIF1-202ENST00000485275 UNC13AQ9UPW8 1703 aa27.31■■□□□ 1.96
LRIF1-202ENST00000485275 BICRAQ9NZM4 1560 aa27.01■■□□□ 1.91
LRIF1-202ENST00000485275 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
LRIF1-202ENST00000485275 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
LRIF1-202ENST00000485275 MROH2BQ7Z745 1585 aa26.34■■□□□ 1.81
LRIF1-202ENST00000485275 BAZ1AQ9NRL2 1556 aaPredicted RBP26.31■■□□□ 1.8
LRIF1-202ENST00000485275 SMARCA4P51532 1647 aa26.3■■□□□ 1.8
LRIF1-202ENST00000485275 RSF1Q96T23 1441 aaPredicted RBP26.27■■□□□ 1.8
LRIF1-202ENST00000485275 SUPT5HO00267 1087 aaKnown RBP26.18■■□□□ 1.78
LRIF1-202ENST00000485275 EIF4G1Q04637 1599 aaKnown RBP26.18■■□□□ 1.78
LRIF1-202ENST00000485275 WIZO95785 1651 aa26.11■■□□□ 1.77
LRIF1-202ENST00000485275 PEG3Q9GZU2 1588 aa26■■□□□ 1.75
LRIF1-202ENST00000485275 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
LRIF1-202ENST00000485275 CC2D2AQ9P2K1 1620 aa25.89■■□□□ 1.73
LRIF1-202ENST00000485275 SMARCA2P51531 1590 aa25.86■■□□□ 1.73
LRIF1-202ENST00000485275 TOP2AP11388 1531 aaKnown RBP25.81■■□□□ 1.72
LRIF1-202ENST00000485275 NCAPD3P42695 1498 aa25.74■■□□□ 1.71
LRIF1-202ENST00000485275 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
LRIF1-202ENST00000485275 HMGXB3Q12766 1538 aa25.71■■□□□ 1.71
LRIF1-202ENST00000485275 DNAJC5BQ9UF47 199 aa25.55■■□□□ 1.68
LRIF1-202ENST00000485275 CCDC88BA6NC98 1476 aa25.51■■□□□ 1.67
LRIF1-202ENST00000485275 CFTRP13569 1480 aa25.08■■□□□ 1.61
LRIF1-202ENST00000485275 CADPSQ9ULU8 1353 aa25.02■■□□□ 1.6
LRIF1-202ENST00000485275 NESP48681 1621 aa25.01■■□□□ 1.59
LRIF1-202ENST00000485275 PRDM2Q13029 1718 aa25■■□□□ 1.59
LRIF1-202ENST00000485275 LAMC3Q9Y6N6 1575 aa24.94■■□□□ 1.58
LRIF1-202ENST00000485275 ABCC8Q09428 1581 aa24.91■■□□□ 1.58
LRIF1-202ENST00000485275 CHIC1Q5VXU3 224 aa24.9■■□□□ 1.58
LRIF1-202ENST00000485275 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
LRIF1-202ENST00000485275 KIF21AQ7Z4S6 1674 aa24.74■■□□□ 1.55
LRIF1-202ENST00000485275 SYNJ1O43426 1573 aa24.72■■□□□ 1.55
LRIF1-202ENST00000485275 WRNQ14191 1432 aaPredicted RBP eCLIP24.71■■□□□ 1.55
LRIF1-202ENST00000485275 PDS5BQ9NTI5 1447 aa24.68■■□□□ 1.54
LRIF1-202ENST00000485275 CUX1P39880 1505 aa24.65■■□□□ 1.54
LRIF1-202ENST00000485275 CEP164Q9UPV0 1460 aa24.65■■□□□ 1.54
LRIF1-202ENST00000485275 BIVM-ERCC5R4GMW8 1640 aa24.61■■□□□ 1.53
LRIF1-202ENST00000485275 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
LRIF1-202ENST00000485275 TOP2BQ02880 1626 aa24.61■■□□□ 1.53
LRIF1-202ENST00000485275 URB2Q14146 1524 aaKnown RBP24.54■■□□□ 1.52
LRIF1-202ENST00000485275 DNMBPQ6XZF7 1577 aa24.52■■□□□ 1.52
LRIF1-202ENST00000485275 TOPBP1Q92547 1522 aa24.5■■□□□ 1.51
LRIF1-202ENST00000485275 ERCC6Q03468 1493 aa24.47■■□□□ 1.51
LRIF1-202ENST00000485275 MRC2Q9UBG0 1479 aa24.45■■□□□ 1.5
LRIF1-202ENST00000485275 THOC2Q8NI27 1593 aaKnown RBP24.45■■□□□ 1.5
LRIF1-202ENST00000485275 FGD5Q6ZNL6 1462 aa24.41■■□□□ 1.5
LRIF1-202ENST00000485275 WDR62O43379 1518 aa24.39■■□□□ 1.49
LRIF1-202ENST00000485275 POLA1P09884 1462 aaPredicted RBP24.36■■□□□ 1.49
LRIF1-202ENST00000485275 SOGA1O94964 1423 aa24.32■■□□□ 1.48
LRIF1-202ENST00000485275 RUSC2Q8N2Y8 1516 aa24.29■■□□□ 1.48
LRIF1-202ENST00000485275 RAD54L2Q9Y4B4 1467 aa24.27■■□□□ 1.48
LRIF1-202ENST00000485275 WDR97A6NE52 1622 aa24.23■■□□□ 1.47
LRIF1-202ENST00000485275 CUX2O14529 1486 aa24.23■■□□□ 1.47
LRIF1-202ENST00000485275 TARBP1Q13395 1621 aaKnown RBP24.21■■□□□ 1.47
LRIF1-202ENST00000485275 FAM9AQ8IZU1 332 aaPredicted RBP24.19■■□□□ 1.46
LRIF1-202ENST00000485275 ABCA10Q8WWZ4 1543 aa24.17■■□□□ 1.46
LRIF1-202ENST00000485275 EEA1Q15075 1411 aa24.1■■□□□ 1.45
LRIF1-202ENST00000485275 ABCA5Q8WWZ7 1642 aa24.08■■□□□ 1.44
LRIF1-202ENST00000485275 KIF27Q86VH2 1401 aa24.08■■□□□ 1.44
LRIF1-202ENST00000485275 IFT140Q96RY7 1462 aa24.07■■□□□ 1.44
LRIF1-202ENST00000485275 ZNF608Q9ULD9 1512 aaPredicted RBP24.03■■□□□ 1.44
LRIF1-202ENST00000485275 TDRD9Q8NDG6 1382 aaKnown RBP24.01■■□□□ 1.43
LRIF1-202ENST00000485275 CSRNP3Q8WYN3 585 aa23.98■■□□□ 1.43
LRIF1-202ENST00000485275 EIF4G3O43432 1585 aaKnown RBP23.96■■□□□ 1.43
LRIF1-202ENST00000485275 AQRO60306 1485 aaKnown RBP eCLIP23.95■■□□□ 1.426e-9■■□□□ 11.5
LRIF1-202ENST00000485275 GAPVD1Q14C86 1478 aa23.95■■□□□ 1.42
LRIF1-202ENST00000485275 LOC105371045A0A1W2PR82 267 aa23.93■■□□□ 1.42
LRIF1-202ENST00000485275 PBRM1Q86U86 1689 aa23.93■■□□□ 1.42
LRIF1-202ENST00000485275 IGF1RP08069 1367 aa23.93■■□□□ 1.42
LRIF1-202ENST00000485275 KIF21BO75037 1637 aa23.91■■□□□ 1.42
LRIF1-202ENST00000485275 PRXQ9BXM0 1461 aa23.9■■□□□ 1.42
LRIF1-202ENST00000485275 ERICH3Q5RHP9 1530 aa23.88■■□□□ 1.41
LRIF1-202ENST00000485275 EHMT2Q96KQ7 1210 aa23.87■■□□□ 1.41
LRIF1-202ENST00000485275 RAPGEF2Q9Y4G8 1499 aa23.85■■□□□ 1.41
LRIF1-202ENST00000485275 CUL7Q14999 1698 aa23.82■■□□□ 1.4
LRIF1-202ENST00000485275 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
LRIF1-202ENST00000485275 GOLGA3Q08378 1498 aa23.8■■□□□ 1.4
LRIF1-202ENST00000485275 ADAMTS12P58397 1594 aa23.78■■□□□ 1.4
LRIF1-202ENST00000485275 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.4
LRIF1-202ENST00000485275 SNAPC4Q5SXM2 1469 aa23.74■■□□□ 1.39
LRIF1-202ENST00000485275 FHAD1B1AJZ9 1412 aa23.67■■□□□ 1.38
LRIF1-202ENST00000485275 MAGI1Q96QZ7 1491 aaPredicted RBP23.66■■□□□ 1.38
LRIF1-202ENST00000485275 TNIKQ9UKE5 1360 aa23.63■■□□□ 1.37
LRIF1-202ENST00000485275 UBTFP17480 764 aaKnown RBP23.6■■□□□ 1.37
LRIF1-202ENST00000485275 SYNJ2O15056 1496 aa23.58■■□□□ 1.37
LRIF1-202ENST00000485275 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
LRIF1-202ENST00000485275 CTTNBP2Q8WZ74 1663 aa23.54■■□□□ 1.36
LRIF1-202ENST00000485275 CEP162Q5TB80 1403 aa23.52■■□□□ 1.36
LRIF1-202ENST00000485275 CHD1O14646 1710 aa23.51■■□□□ 1.35
LRIF1-202ENST00000485275 CEP170Q5SW79 1584 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms