RNA–Protein interactions for RNA: ENST00000485080.6

SREBF1-213, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 5

Gene SREBF1, Length 1,230 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-213ENST00000485080 NISCHQ9Y2I1 1504 aa43.17■■■■■ 4.5
SREBF1-213ENST00000485080 CCDC180Q9P1Z9 1646 aa38.34■■■■□ 3.73
SREBF1-213ENST00000485080 ABCC9O60706 1549 aa37.34■■■■□ 3.57
SREBF1-213ENST00000485080 NACADO15069 1562 aa36.06■■■■□ 3.36
SREBF1-213ENST00000485080 RB1CC1Q8TDY2 1594 aa36.03■■■■□ 3.36
SREBF1-213ENST00000485080 ZCCHC6Q5VYS8 1495 aaKnown RBP35.98■■■■□ 3.35
SREBF1-213ENST00000485080 MYO15BQ96JP2 1530 aa35.97■■■■□ 3.35
SREBF1-213ENST00000485080 DCAF8L2P0C7V8 631 aa35.87■■■■□ 3.33
SREBF1-213ENST00000485080 DCAF1Q9Y4B6 1507 aa35.81■■■■□ 3.32
SREBF1-213ENST00000485080 UNC13AQ9UPW8 1703 aa35.15■■■■□ 3.22
SREBF1-213ENST00000485080 BICRAQ9NZM4 1560 aa34.95■■■■□ 3.18
SREBF1-213ENST00000485080 PABPN1Q86U42 306 aaKnown RBP eCLIP34.9■■■■□ 3.18
SREBF1-213ENST00000485080 SCRIBQ14160 1630 aa34.87■■■■□ 3.17
SREBF1-213ENST00000485080 SHROOM4Q9ULL8 1493 aa34.71■■■■□ 3.15
SREBF1-213ENST00000485080 DNAJC5BQ9UF47 199 aa34.25■■■■□ 3.07
SREBF1-213ENST00000485080 EIF4G1Q04637 1599 aaKnown RBP34■■■■□ 3.03
SREBF1-213ENST00000485080 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3
SREBF1-213ENST00000485080 CECR2Q9BXF3 1484 aa33.6■■■□□ 2.97
SREBF1-213ENST00000485080 BAZ1AQ9NRL2 1556 aaPredicted RBP33.44■■■□□ 2.94
SREBF1-213ENST00000485080 SMARCA4P51532 1647 aa33.44■■■□□ 2.94
SREBF1-213ENST00000485080 NCAPD3P42695 1498 aa33.3■■■□□ 2.92
SREBF1-213ENST00000485080 ATAD2BQ9ULI0 1458 aa33.28■■■□□ 2.92
SREBF1-213ENST00000485080 SMARCA2P51531 1590 aa33.25■■■□□ 2.91
SREBF1-213ENST00000485080 MROH2BQ7Z745 1585 aa33.22■■■□□ 2.91
SREBF1-213ENST00000485080 PEG3Q9GZU2 1588 aa33.2■■■□□ 2.91
SREBF1-213ENST00000485080 HMGXB3Q12766 1538 aa33.11■■■□□ 2.89
SREBF1-213ENST00000485080 BAZ1BQ9UIG0 1483 aaKnown RBP32.96■■■□□ 2.87
SREBF1-213ENST00000485080 RSF1Q96T23 1441 aaPredicted RBP32.91■■■□□ 2.86
SREBF1-213ENST00000485080 WIZO95785 1651 aa32.82■■■□□ 2.84
SREBF1-213ENST00000485080 TOP2AP11388 1531 aaKnown RBP32.55■■■□□ 2.8
SREBF1-213ENST00000485080 LAMC3Q9Y6N6 1575 aa32.36■■■□□ 2.77
SREBF1-213ENST00000485080 NESP48681 1621 aa32.34■■■□□ 2.77
SREBF1-213ENST00000485080 CADPSQ9ULU8 1353 aa32.31■■■□□ 2.76
SREBF1-213ENST00000485080 ERCC6Q03468 1493 aa32.19■■■□□ 2.74
SREBF1-213ENST00000485080 CCDC88BA6NC98 1476 aa32.16■■■□□ 2.74
SREBF1-213ENST00000485080 PDS5BQ9NTI5 1447 aa32.16■■■□□ 2.74
SREBF1-213ENST00000485080 CFTRP13569 1480 aa32.14■■■□□ 2.74
SREBF1-213ENST00000485080 SUPT5HO00267 1087 aaKnown RBP32■■■□□ 2.71
SREBF1-213ENST00000485080 KIF21AQ7Z4S6 1674 aa31.95■■■□□ 2.7
SREBF1-213ENST00000485080 CUX2O14529 1486 aa31.91■■■□□ 2.7
SREBF1-213ENST00000485080 FANCD2Q9BXW9 1451 aa31.88■■■□□ 2.69
SREBF1-213ENST00000485080 THOC2Q8NI27 1593 aaKnown RBP31.87■■■□□ 2.69
SREBF1-213ENST00000485080 CEP164Q9UPV0 1460 aa31.83■■■□□ 2.69
SREBF1-213ENST00000485080 PRDM2Q13029 1718 aa31.82■■■□□ 2.68
SREBF1-213ENST00000485080 MRC2Q9UBG0 1479 aa31.78■■■□□ 2.68
SREBF1-213ENST00000485080 WDR62O43379 1518 aa31.7■■■□□ 2.66
SREBF1-213ENST00000485080 URB2Q14146 1524 aaKnown RBP31.55■■■□□ 2.64
SREBF1-213ENST00000485080 ABCC8Q09428 1581 aa31.46■■■□□ 2.63
SREBF1-213ENST00000485080 TOPBP1Q92547 1522 aa31.39■■■□□ 2.61
SREBF1-213ENST00000485080 DNMBPQ6XZF7 1577 aa31.36■■■□□ 2.61
SREBF1-213ENST00000485080 IFT140Q96RY7 1462 aa31.2■■■□□ 2.58
SREBF1-213ENST00000485080 CUX1P39880 1505 aa31.17■■■□□ 2.58
SREBF1-213ENST00000485080 POLA1P09884 1462 aaPredicted RBP31.13■■■□□ 2.57
SREBF1-213ENST00000485080 TARBP1Q13395 1621 aaKnown RBP31.05■■■□□ 2.56
SREBF1-213ENST00000485080 FGD5Q6ZNL6 1462 aa31.03■■■□□ 2.56
SREBF1-213ENST00000485080 SOGA1O94964 1423 aa31■■■□□ 2.55
SREBF1-213ENST00000485080 WRNQ14191 1432 aaPredicted RBP eCLIP31■■■□□ 2.55
SREBF1-213ENST00000485080 ZNF608Q9ULD9 1512 aaPredicted RBP30.99■■■□□ 2.55
SREBF1-213ENST00000485080 RAD54L2Q9Y4B4 1467 aa30.95■■■□□ 2.54
SREBF1-213ENST00000485080 TOP2BQ02880 1626 aa30.95■■■□□ 2.54
SREBF1-213ENST00000485080 BIVM-ERCC5R4GMW8 1640 aa30.92■■■□□ 2.54
SREBF1-213ENST00000485080 SYNJ1O43426 1573 aa30.88■■■□□ 2.53
SREBF1-213ENST00000485080 WDR97A6NE52 1622 aa30.87■■■□□ 2.53
SREBF1-213ENST00000485080 EIF4G3O43432 1585 aaKnown RBP30.86■■■□□ 2.53
SREBF1-213ENST00000485080 DNAJC5Q9H3Z4 198 aa30.85■■■□□ 2.53
SREBF1-213ENST00000485080 AQRO60306 1485 aaKnown RBP eCLIP30.82■■■□□ 2.533e-8■■■□□ 17
SREBF1-213ENST00000485080 ABCA10Q8WWZ4 1543 aa30.8■■■□□ 2.52
SREBF1-213ENST00000485080 TDRD9Q8NDG6 1382 aaKnown RBP30.78■■■□□ 2.52
SREBF1-213ENST00000485080 GRIN2BQ13224 1484 aa30.65■■■□□ 2.5
SREBF1-213ENST00000485080 GAPVD1Q14C86 1478 aa30.64■■■□□ 2.5
SREBF1-213ENST00000485080 ABCA5Q8WWZ7 1642 aa30.64■■■□□ 2.5
SREBF1-213ENST00000485080 OSCARQ8IYS5 282 aa30.59■■■□□ 2.49
SREBF1-213ENST00000485080 MAGI1Q96QZ7 1491 aaPredicted RBP30.58■■■□□ 2.49
SREBF1-213ENST00000485080 SNAPC4Q5SXM2 1469 aa30.54■■■□□ 2.48
SREBF1-213ENST00000485080 PBRM1Q86U86 1689 aa30.51■■■□□ 2.47
SREBF1-213ENST00000485080 ERICH3Q5RHP9 1530 aa30.44■■■□□ 2.46
SREBF1-213ENST00000485080 SYNJ2O15056 1496 aa30.44■■■□□ 2.46
SREBF1-213ENST00000485080 CHD1O14646 1710 aa30.42■■■□□ 2.46
SREBF1-213ENST00000485080 FBLN2P98095 1184 aa30.38■■■□□ 2.45
SREBF1-213ENST00000485080 CHMP7Q8WUX9 453 aaPredicted RBP30.38■■■□□ 2.45
SREBF1-213ENST00000485080 KIF27Q86VH2 1401 aa30.38■■■□□ 2.45
SREBF1-213ENST00000485080 FHAD1B1AJZ9 1412 aa30.32■■■□□ 2.44
SREBF1-213ENST00000485080 ADAMTS12P58397 1594 aa30.32■■■□□ 2.44
SREBF1-213ENST00000485080 TRIM41Q8WV44 630 aa30.29■■■□□ 2.44
SREBF1-213ENST00000485080 IGF1RP08069 1367 aa30.27■■■□□ 2.44
SREBF1-213ENST00000485080 GRIN2AQ12879 1464 aa30.24■■■□□ 2.43
SREBF1-213ENST00000485080 CLASP1Q7Z460 1538 aa30.19■■■□□ 2.42
SREBF1-213ENST00000485080 NUP160Q12769 1436 aa30.14■■■□□ 2.42
SREBF1-213ENST00000485080 CUL7Q14999 1698 aa30.14■■■□□ 2.41
SREBF1-213ENST00000485080 ARHGEF11O15085 1522 aa30.06■■■□□ 2.4
SREBF1-213ENST00000485080 CARMIL1Q5VZK9 1371 aa30.05■■■□□ 2.4
SREBF1-213ENST00000485080 CEP170Q5SW79 1584 aa30.05■■■□□ 2.4
SREBF1-213ENST00000485080 RUSC2Q8N2Y8 1516 aa30.05■■■□□ 2.4
SREBF1-213ENST00000485080 RIMBP3CA6NJZ7 1639 aa30.03■■■□□ 2.4
SREBF1-213ENST00000485080 RIMBP3BA6NNM3 1639 aa30.03■■■□□ 2.4
SREBF1-213ENST00000485080 RIMBP3Q9UFD9 1639 aa30.03■■■□□ 2.4
SREBF1-213ENST00000485080 CHIC1Q5VXU3 224 aa30■■■□□ 2.39
SREBF1-213ENST00000485080 SHROOM2Q13796 1616 aa29.89■■■□□ 2.37
SREBF1-213ENST00000485080 EEA1Q15075 1411 aa29.88■■■□□ 2.37
SREBF1-213ENST00000485080 RAPGEF2Q9Y4G8 1499 aa29.88■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms