RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 NISCHQ9Y2I1 1504 aa31.73■■■□□ 2.67
HDAC1-209ENST00000484305 CCDC180Q9P1Z9 1646 aa28.29■■■□□ 2.12
HDAC1-209ENST00000484305 ABCC9O60706 1549 aa27.91■■■□□ 2.06
HDAC1-209ENST00000484305 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
HDAC1-209ENST00000484305 NACADO15069 1562 aa26.63■■□□□ 1.85
HDAC1-209ENST00000484305 DCAF8L2P0C7V8 631 aa26.62■■□□□ 1.85
HDAC1-209ENST00000484305 MYO15BQ96JP2 1530 aa26.39■■□□□ 1.82
HDAC1-209ENST00000484305 ZCCHC6Q5VYS8 1495 aaKnown RBP26.37■■□□□ 1.81
HDAC1-209ENST00000484305 DCAF1Q9Y4B6 1507 aa26.21■■□□□ 1.79
HDAC1-209ENST00000484305 UNC13AQ9UPW8 1703 aa26.19■■□□□ 1.78
HDAC1-209ENST00000484305 PABPN1Q86U42 306 aaKnown RBP eCLIP26.05■■□□□ 1.76
HDAC1-209ENST00000484305 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
HDAC1-209ENST00000484305 DNAJC5BQ9UF47 199 aa25.84■■□□□ 1.73
HDAC1-209ENST00000484305 SCRIBQ14160 1630 aa25.82■■□□□ 1.72
HDAC1-209ENST00000484305 SHROOM4Q9ULL8 1493 aa25.59■■□□□ 1.69
HDAC1-209ENST00000484305 EIF4G1Q04637 1599 aaKnown RBP25.27■■□□□ 1.64
HDAC1-209ENST00000484305 CC2D2AQ9P2K1 1620 aa25.23■■□□□ 1.63
HDAC1-209ENST00000484305 CECR2Q9BXF3 1484 aa25.08■■□□□ 1.6
HDAC1-209ENST00000484305 SMARCA4P51532 1647 aa24.67■■□□□ 1.54
HDAC1-209ENST00000484305 BAZ1AQ9NRL2 1556 aaPredicted RBP24.59■■□□□ 1.53
HDAC1-209ENST00000484305 NCAPD3P42695 1498 aa24.58■■□□□ 1.53
HDAC1-209ENST00000484305 ATAD2BQ9ULI0 1458 aa24.58■■□□□ 1.53
HDAC1-209ENST00000484305 SMARCA2P51531 1590 aa24.52■■□□□ 1.52
HDAC1-209ENST00000484305 MROH2BQ7Z745 1585 aa24.46■■□□□ 1.51
HDAC1-209ENST00000484305 HMGXB3Q12766 1538 aa24.44■■□□□ 1.5
HDAC1-209ENST00000484305 PEG3Q9GZU2 1588 aa24.42■■□□□ 1.5
HDAC1-209ENST00000484305 BAZ1BQ9UIG0 1483 aaKnown RBP24.36■■□□□ 1.49
HDAC1-209ENST00000484305 WIZO95785 1651 aa24.21■■□□□ 1.47
HDAC1-209ENST00000484305 NESP48681 1621 aa24.1■■□□□ 1.45
HDAC1-209ENST00000484305 RSF1Q96T23 1441 aaPredicted RBP24.1■■□□□ 1.45
HDAC1-209ENST00000484305 ERCC6Q03468 1493 aa24.04■■□□□ 1.44
HDAC1-209ENST00000484305 LAMC3Q9Y6N6 1575 aa23.97■■□□□ 1.43
HDAC1-209ENST00000484305 TOP2AP11388 1531 aaKnown RBP23.89■■□□□ 1.42
HDAC1-209ENST00000484305 CADPSQ9ULU8 1353 aa23.86■■□□□ 1.41
HDAC1-209ENST00000484305 CUX2O14529 1486 aa23.85■■□□□ 1.41
HDAC1-209ENST00000484305 KIF21AQ7Z4S6 1674 aa23.83■■□□□ 1.4
HDAC1-209ENST00000484305 PDS5BQ9NTI5 1447 aa23.8■■□□□ 1.4
HDAC1-209ENST00000484305 THOC2Q8NI27 1593 aaKnown RBP23.77■■□□□ 1.4
HDAC1-209ENST00000484305 CFTRP13569 1480 aa23.68■■□□□ 1.38
HDAC1-209ENST00000484305 CCDC88BA6NC98 1476 aa23.64■■□□□ 1.38
HDAC1-209ENST00000484305 FANCD2Q9BXW9 1451 aa23.6■■□□□ 1.37
HDAC1-209ENST00000484305 MRC2Q9UBG0 1479 aa23.58■■□□□ 1.37
HDAC1-209ENST00000484305 CEP164Q9UPV0 1460 aa23.57■■□□□ 1.36
HDAC1-209ENST00000484305 PRDM2Q13029 1718 aa23.52■■□□□ 1.36
HDAC1-209ENST00000484305 WDR62O43379 1518 aa23.52■■□□□ 1.36
HDAC1-209ENST00000484305 URB2Q14146 1524 aaKnown RBP23.39■■□□□ 1.34
HDAC1-209ENST00000484305 DNAJC5Q9H3Z4 198 aa23.39■■□□□ 1.33
HDAC1-209ENST00000484305 SUPT5HO00267 1087 aaKnown RBP23.36■■□□□ 1.33
HDAC1-209ENST00000484305 AEBP2Q6ZN18 517 aaPredicted RBP23.28■■□□□ 1.32
HDAC1-209ENST00000484305 TOPBP1Q92547 1522 aa23.2■■□□□ 1.3
HDAC1-209ENST00000484305 ABCC8Q09428 1581 aa23.14■■□□□ 1.3
HDAC1-209ENST00000484305 DNMBPQ6XZF7 1577 aa23.14■■□□□ 1.3
HDAC1-209ENST00000484305 IFT140Q96RY7 1462 aa23.08■■□□□ 1.29
HDAC1-209ENST00000484305 ZNF608Q9ULD9 1512 aaPredicted RBP23.03■■□□□ 1.28
HDAC1-209ENST00000484305 POLA1P09884 1462 aaPredicted RBP22.98■■□□□ 1.27
HDAC1-209ENST00000484305 TARBP1Q13395 1621 aaKnown RBP22.97■■□□□ 1.27
HDAC1-209ENST00000484305 CUX1P39880 1505 aa22.96■■□□□ 1.27
HDAC1-209ENST00000484305 EIF4G3O43432 1585 aaKnown RBP22.93■■□□□ 1.26
HDAC1-209ENST00000484305 RAD54L2Q9Y4B4 1467 aa22.92■■□□□ 1.26
HDAC1-209ENST00000484305 FGD5Q6ZNL6 1462 aa22.91■■□□□ 1.26
HDAC1-209ENST00000484305 SOGA1O94964 1423 aa22.89■■□□□ 1.25
HDAC1-209ENST00000484305 AQRO60306 1485 aaKnown RBP eCLIP22.88■■□□□ 1.25
HDAC1-209ENST00000484305 OSCARQ8IYS5 282 aa22.84■■□□□ 1.25
HDAC1-209ENST00000484305 TDRD9Q8NDG6 1382 aaKnown RBP22.8■■□□□ 1.24
HDAC1-209ENST00000484305 WDR97A6NE52 1622 aa22.74■■□□□ 1.23
HDAC1-209ENST00000484305 WRNQ14191 1432 aaPredicted RBP eCLIP22.72■■□□□ 1.23
HDAC1-209ENST00000484305 BIVM-ERCC5R4GMW8 1640 aa22.71■■□□□ 1.23
HDAC1-209ENST00000484305 CHD1O14646 1710 aa22.71■■□□□ 1.23
HDAC1-209ENST00000484305 SYNJ1O43426 1573 aa22.7■■□□□ 1.22
HDAC1-209ENST00000484305 TOP2BQ02880 1626 aa22.7■■□□□ 1.22
HDAC1-209ENST00000484305 ABCA10Q8WWZ4 1543 aa22.66■■□□□ 1.22
HDAC1-209ENST00000484305 FBLN2P98095 1184 aa22.64■■□□□ 1.21
HDAC1-209ENST00000484305 SNAPC4Q5SXM2 1469 aa22.64■■□□□ 1.21
HDAC1-209ENST00000484305 GRIN2BQ13224 1484 aa22.63■■□□□ 1.21
HDAC1-209ENST00000484305 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
HDAC1-209ENST00000484305 GAPVD1Q14C86 1478 aa22.61■■□□□ 1.21
HDAC1-209ENST00000484305 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
HDAC1-209ENST00000484305 MAGI1Q96QZ7 1491 aaPredicted RBP22.59■■□□□ 1.21
HDAC1-209ENST00000484305 TRIM41Q8WV44 630 aa22.55■■□□□ 1.2
HDAC1-209ENST00000484305 CHMP7Q8WUX9 453 aaPredicted RBP22.53■■□□□ 1.2
HDAC1-209ENST00000484305 RIMBP3CA6NJZ7 1639 aa22.53■■□□□ 1.2
HDAC1-209ENST00000484305 RIMBP3BA6NNM3 1639 aa22.53■■□□□ 1.2
HDAC1-209ENST00000484305 RIMBP3Q9UFD9 1639 aa22.53■■□□□ 1.2
HDAC1-209ENST00000484305 SYNJ2O15056 1496 aa22.52■■□□□ 1.2
HDAC1-209ENST00000484305 ARHGEF11O15085 1522 aa22.48■■□□□ 1.19
HDAC1-209ENST00000484305 CLASP1Q7Z460 1538 aa22.42■■□□□ 1.18
HDAC1-209ENST00000484305 ADAMTS12P58397 1594 aa22.39■■□□□ 1.18
HDAC1-209ENST00000484305 ERICH3Q5RHP9 1530 aa22.38■■□□□ 1.17
HDAC1-209ENST00000484305 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
HDAC1-209ENST00000484305 FHAD1B1AJZ9 1412 aa22.33■■□□□ 1.17
HDAC1-209ENST00000484305 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
HDAC1-209ENST00000484305 CYB5RLQ6IPT4 315 aa22.3■■□□□ 1.16
HDAC1-209ENST00000484305 ARAP1Q96P48 1450 aa22.29■■□□□ 1.16
HDAC1-209ENST00000484305 CEP170Q5SW79 1584 aa22.27■■□□□ 1.16
HDAC1-209ENST00000484305 NUP160Q12769 1436 aa22.25■■□□□ 1.15
HDAC1-209ENST00000484305 KIF27Q86VH2 1401 aa22.24■■□□□ 1.15
HDAC1-209ENST00000484305 IGF1RP08069 1367 aa22.21■■□□□ 1.15
HDAC1-209ENST00000484305 CUL7Q14999 1698 aa22.14■■□□□ 1.14
HDAC1-209ENST00000484305 ERCC6L2Q5T890 1561 aa22.13■■□□□ 1.13
HDAC1-209ENST00000484305 SHROOM2Q13796 1616 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms