RNA–Protein interactions for RNA: ENST00000484235.1

SMDT1-203, Transcript of single-pass membrane protein with aspartate rich tail 1, humanhuman

TSL 1 (best)

Gene SMDT1, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMDT1-203ENST00000484235 NISCHQ9Y2I1 1504 aa64.43■■■■■ 7.9
SMDT1-203ENST00000484235 CCDC180Q9P1Z9 1646 aa57.14■■■■■ 6.74
SMDT1-203ENST00000484235 ABCC9O60706 1549 aa56.82■■■■■ 6.69
SMDT1-203ENST00000484235 RB1CC1Q8TDY2 1594 aa53.95■■■■■ 6.23
SMDT1-203ENST00000484235 DCAF8L2P0C7V8 631 aa53.93■■■■■ 6.22
SMDT1-203ENST00000484235 NACADO15069 1562 aa53.8■■■■■ 6.2
SMDT1-203ENST00000484235 DNAJC5BQ9UF47 199 aa53.66■■■■■ 6.18
SMDT1-203ENST00000484235 ZCCHC6Q5VYS8 1495 aaKnown RBP53.65■■■■■ 6.18
SMDT1-203ENST00000484235 MYO15BQ96JP2 1530 aa53.52■■■■■ 6.16
SMDT1-203ENST00000484235 DCAF1Q9Y4B6 1507 aa53.32■■■■■ 6.13
SMDT1-203ENST00000484235 PABPN1Q86U42 306 aaKnown RBP eCLIP52.93■■■■■ 6.06
SMDT1-203ENST00000484235 UNC13AQ9UPW8 1703 aa52.7■■■■■ 6.03
SMDT1-203ENST00000484235 BICRAQ9NZM4 1560 aa52.51■■■■■ 6
SMDT1-203ENST00000484235 SCRIBQ14160 1630 aa52.15■■■■■ 5.94
SMDT1-203ENST00000484235 SHROOM4Q9ULL8 1493 aa51.71■■■■■ 5.87
SMDT1-203ENST00000484235 CC2D2AQ9P2K1 1620 aa51.3■■■■■ 5.8
SMDT1-203ENST00000484235 CECR2Q9BXF3 1484 aa51.21■■■■■ 5.79
SMDT1-203ENST00000484235 EIF4G1Q04637 1599 aaKnown RBP51.16■■■■■ 5.78
SMDT1-203ENST00000484235 SMARCA4P51532 1647 aa49.91■■■■■ 5.58
SMDT1-203ENST00000484235 BAZ1AQ9NRL2 1556 aaPredicted RBP49.91■■■■■ 5.58
SMDT1-203ENST00000484235 ATAD2BQ9ULI0 1458 aa49.7■■■■■ 5.55
SMDT1-203ENST00000484235 NCAPD3P42695 1498 aa49.69■■■■■ 5.55
SMDT1-203ENST00000484235 MROH2BQ7Z745 1585 aa49.63■■■■■ 5.54
SMDT1-203ENST00000484235 SMARCA2P51531 1590 aa49.62■■■■■ 5.53
SMDT1-203ENST00000484235 PEG3Q9GZU2 1588 aa49.45■■■■■ 5.51
SMDT1-203ENST00000484235 HMGXB3Q12766 1538 aa49.37■■■■■ 5.49
SMDT1-203ENST00000484235 DNAJC5Q9H3Z4 198 aa49.34■■■■■ 5.49
SMDT1-203ENST00000484235 BAZ1BQ9UIG0 1483 aaKnown RBP49.28■■■■■ 5.48
SMDT1-203ENST00000484235 RSF1Q96T23 1441 aaPredicted RBP49.15■■■■■ 5.46
SMDT1-203ENST00000484235 WIZO95785 1651 aa49.05■■■■■ 5.44
SMDT1-203ENST00000484235 CUX2O14529 1486 aa49.04■■■■■ 5.44
SMDT1-203ENST00000484235 ERCC6Q03468 1493 aa48.98■■■■■ 5.43
SMDT1-203ENST00000484235 NESP48681 1621 aa48.8■■■■■ 5.4
SMDT1-203ENST00000484235 TOP2AP11388 1531 aaKnown RBP48.56■■■■■ 5.36
SMDT1-203ENST00000484235 LAMC3Q9Y6N6 1575 aa48.36■■■■■ 5.33
SMDT1-203ENST00000484235 CADPSQ9ULU8 1353 aa48.27■■■■■ 5.32
SMDT1-203ENST00000484235 THOC2Q8NI27 1593 aaKnown RBP48.27■■■■■ 5.32
SMDT1-203ENST00000484235 PDS5BQ9NTI5 1447 aa48.12■■■■■ 5.29
SMDT1-203ENST00000484235 CCDC88BA6NC98 1476 aa48.06■■■■■ 5.28
SMDT1-203ENST00000484235 KIF21AQ7Z4S6 1674 aa48.03■■■■■ 5.28
SMDT1-203ENST00000484235 SUPT5HO00267 1087 aaKnown RBP48.02■■■■■ 5.28
SMDT1-203ENST00000484235 CFTRP13569 1480 aa47.97■■■■■ 5.27
SMDT1-203ENST00000484235 MRC2Q9UBG0 1479 aa47.71■■■■■ 5.23
SMDT1-203ENST00000484235 FANCD2Q9BXW9 1451 aa47.66■■■■■ 5.22
SMDT1-203ENST00000484235 WDR62O43379 1518 aa47.61■■■■■ 5.21
SMDT1-203ENST00000484235 CEP164Q9UPV0 1460 aa47.58■■■■■ 5.21
SMDT1-203ENST00000484235 PRDM2Q13029 1718 aa47.4■■■■■ 5.18
SMDT1-203ENST00000484235 URB2Q14146 1524 aaKnown RBP47.15■■■■■ 5.14
SMDT1-203ENST00000484235 TRIM41Q8WV44 630 aa46.96■■■■■ 5.11
SMDT1-203ENST00000484235 ABCC8Q09428 1581 aa46.94■■■■■ 5.11
SMDT1-203ENST00000484235 TOPBP1Q92547 1522 aa46.89■■■■■ 5.1
SMDT1-203ENST00000484235 OSCARQ8IYS5 282 aa46.82■■■■■ 5.09
SMDT1-203ENST00000484235 DNMBPQ6XZF7 1577 aa46.81■■■■■ 5.08
SMDT1-203ENST00000484235 IFT140Q96RY7 1462 aa46.6■■■■■ 5.05
SMDT1-203ENST00000484235 CUX1P39880 1505 aa46.55■■■■■ 5.04
SMDT1-203ENST00000484235 ZNF608Q9ULD9 1512 aaPredicted RBP46.54■■■■■ 5.04
SMDT1-203ENST00000484235 POLA1P09884 1462 aaPredicted RBP46.5■■■■■ 5.03
SMDT1-203ENST00000484235 FGD5Q6ZNL6 1462 aa46.38■■■■■ 5.02
SMDT1-203ENST00000484235 SOGA1O94964 1423 aa46.38■■■■■ 5.02
SMDT1-203ENST00000484235 TARBP1Q13395 1621 aaKnown RBP46.33■■■■■ 5.01
SMDT1-203ENST00000484235 WRNQ14191 1432 aaPredicted RBP eCLIP46.33■■■■■ 5.01
SMDT1-203ENST00000484235 RAD54L2Q9Y4B4 1467 aa46.31■■■■■ 5
SMDT1-203ENST00000484235 EIF4G3O43432 1585 aaKnown RBP46.16■■■■■ 4.98
SMDT1-203ENST00000484235 TOP2BQ02880 1626 aa46.16■■■■■ 4.98
SMDT1-203ENST00000484235 AQRO60306 1485 aaKnown RBP eCLIP46.15■■■■■ 4.98
SMDT1-203ENST00000484235 RIMBP3CA6NJZ7 1639 aa46.14■■■■■ 4.98
SMDT1-203ENST00000484235 RIMBP3BA6NNM3 1639 aa46.14■■■■■ 4.98
SMDT1-203ENST00000484235 RIMBP3Q9UFD9 1639 aa46.14■■■■■ 4.98
SMDT1-203ENST00000484235 SYNJ1O43426 1573 aa46.13■■■■■ 4.97
SMDT1-203ENST00000484235 TDRD9Q8NDG6 1382 aaKnown RBP46.1■■■■■ 4.97
SMDT1-203ENST00000484235 BIVM-ERCC5R4GMW8 1640 aa46.1■■■■■ 4.97
SMDT1-203ENST00000484235 ARHGEF11O15085 1522 aa46.02■■■■■ 4.96
SMDT1-203ENST00000484235 WDR97A6NE52 1622 aa45.98■■■■■ 4.95
SMDT1-203ENST00000484235 ABCA10Q8WWZ4 1543 aa45.97■■■■■ 4.95
SMDT1-203ENST00000484235 GAPVD1Q14C86 1478 aa45.81■■■■■ 4.92
SMDT1-203ENST00000484235 CHD1O14646 1710 aa45.81■■■■■ 4.92
SMDT1-203ENST00000484235 GRIN2BQ13224 1484 aa45.79■■■■■ 4.92
SMDT1-203ENST00000484235 FBLN2P98095 1184 aa45.74■■■■■ 4.91
SMDT1-203ENST00000484235 CYB5RLQ6IPT4 315 aa45.73■■■■■ 4.91
SMDT1-203ENST00000484235 ABCA5Q8WWZ7 1642 aa45.7■■■■■ 4.91
SMDT1-203ENST00000484235 SNAPC4Q5SXM2 1469 aa45.68■■■■■ 4.9
SMDT1-203ENST00000484235 MAGI1Q96QZ7 1491 aaPredicted RBP45.65■■■■■ 4.9
SMDT1-203ENST00000484235 ARAP1Q96P48 1450 aa45.59■■■■■ 4.89
SMDT1-203ENST00000484235 CHMP7Q8WUX9 453 aaPredicted RBP45.55■■■■■ 4.88
SMDT1-203ENST00000484235 PBRM1Q86U86 1689 aa45.55■■■■■ 4.88
SMDT1-203ENST00000484235 SYNJ2O15056 1496 aa45.48■■■■■ 4.87
SMDT1-203ENST00000484235 ERICH3Q5RHP9 1530 aa45.41■■■■■ 4.86
SMDT1-203ENST00000484235 CLASP1Q7Z460 1538 aa45.41■■■■■ 4.86
SMDT1-203ENST00000484235 KIF27Q86VH2 1401 aa45.38■■■■■ 4.86
SMDT1-203ENST00000484235 FHAD1B1AJZ9 1412 aa45.29■■■■■ 4.84
SMDT1-203ENST00000484235 ADAMTS12P58397 1594 aa45.25■■■■■ 4.83
SMDT1-203ENST00000484235 IGF1RP08069 1367 aa45.23■■■■■ 4.83
SMDT1-203ENST00000484235 TRHP20396 242 aaPredicted RBP45.19■■■■■ 4.82
SMDT1-203ENST00000484235 GRIN2AQ12879 1464 aa45.17■■■■■ 4.82
SMDT1-203ENST00000484235 NUP160Q12769 1436 aa44.99■■■■■ 4.79
SMDT1-203ENST00000484235 CUL7Q14999 1698 aa44.95■■■■■ 4.79
SMDT1-203ENST00000484235 RUSC2Q8N2Y8 1516 aa44.95■■■■■ 4.79
SMDT1-203ENST00000484235 CARMIL1Q5VZK9 1371 aa44.94■■■■■ 4.79
SMDT1-203ENST00000484235 CEP170Q5SW79 1584 aa44.9■■■■■ 4.78
SMDT1-203ENST00000484235 CHIC1Q5VXU3 224 aa44.87■■■■■ 4.77
Retrieved 100 of 20,778 RNA–protein pairs in 176.4 ms