RNA–Protein interactions for RNA: ENST00000483021.5

R3HDM1-215, Transcript of R3H domain containing 1, humanhuman

TSL 3

Gene R3HDM1, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-215ENST00000483021 NISCHQ9Y2I1 1504 aa48.7■■■■■ 5.39
R3HDM1-215ENST00000483021 CCDC180Q9P1Z9 1646 aa43.77■■■■■ 4.6
R3HDM1-215ENST00000483021 ABCC9O60706 1549 aa43.43■■■■■ 4.54
R3HDM1-215ENST00000483021 RB1CC1Q8TDY2 1594 aa41.53■■■■■ 4.24
R3HDM1-215ENST00000483021 NACADO15069 1562 aa41.29■■■■■ 4.2
R3HDM1-215ENST00000483021 DCAF8L2P0C7V8 631 aa40.89■■■■■ 4.14
R3HDM1-215ENST00000483021 MYO15BQ96JP2 1530 aa40.79■■■■■ 4.12
R3HDM1-215ENST00000483021 UNC13AQ9UPW8 1703 aa40.62■■■■■ 4.09
R3HDM1-215ENST00000483021 DNAJC5BQ9UF47 199 aa40.47■■■■■ 4.07
R3HDM1-215ENST00000483021 ZCCHC6Q5VYS8 1495 aaKnown RBP40.43■■■■■ 4.06
R3HDM1-215ENST00000483021 PABPN1Q86U42 306 aaKnown RBP eCLIP40.37■■■■■ 4.05
R3HDM1-215ENST00000483021 DCAF1Q9Y4B6 1507 aa40.32■■■■■ 4.04
R3HDM1-215ENST00000483021 BICRAQ9NZM4 1560 aa40.25■■■■■ 4.03
R3HDM1-215ENST00000483021 SHROOM4Q9ULL8 1493 aa39.86■■■■□ 3.97
R3HDM1-215ENST00000483021 SCRIBQ14160 1630 aa39.78■■■■□ 3.96
R3HDM1-215ENST00000483021 CC2D2AQ9P2K1 1620 aa39.31■■■■□ 3.88
R3HDM1-215ENST00000483021 EIF4G1Q04637 1599 aaKnown RBP39.28■■■■□ 3.88
R3HDM1-215ENST00000483021 CECR2Q9BXF3 1484 aa39.14■■■■□ 3.86
R3HDM1-215ENST00000483021 NCAPD3P42695 1498 aa38.05■■■■□ 3.68
R3HDM1-215ENST00000483021 SMARCA4P51532 1647 aa38.01■■■■□ 3.67
R3HDM1-215ENST00000483021 ATAD2BQ9ULI0 1458 aa37.94■■■■□ 3.66
R3HDM1-215ENST00000483021 SMARCA2P51531 1590 aa37.93■■■■□ 3.66
R3HDM1-215ENST00000483021 HMGXB3Q12766 1538 aa37.86■■■■□ 3.65
R3HDM1-215ENST00000483021 BAZ1AQ9NRL2 1556 aaPredicted RBP37.85■■■■□ 3.65
R3HDM1-215ENST00000483021 PEG3Q9GZU2 1588 aa37.66■■■■□ 3.62
R3HDM1-215ENST00000483021 BAZ1BQ9UIG0 1483 aaKnown RBP37.62■■■■□ 3.61
R3HDM1-215ENST00000483021 ERCC6Q03468 1493 aa37.55■■■■□ 3.6
R3HDM1-215ENST00000483021 MROH2BQ7Z745 1585 aa37.49■■■■□ 3.59
R3HDM1-215ENST00000483021 CUX2O14529 1486 aa37.47■■■■□ 3.59
R3HDM1-215ENST00000483021 NESP48681 1621 aa37.34■■■■□ 3.57
R3HDM1-215ENST00000483021 LAMC3Q9Y6N6 1575 aa37.24■■■■□ 3.55
R3HDM1-215ENST00000483021 DNAJC5Q9H3Z4 198 aa37.13■■■■□ 3.53
R3HDM1-215ENST00000483021 WIZO95785 1651 aa37.09■■■■□ 3.53
R3HDM1-215ENST00000483021 THOC2Q8NI27 1593 aaKnown RBP37.04■■■■□ 3.52
R3HDM1-215ENST00000483021 KIF21AQ7Z4S6 1674 aa36.98■■■■□ 3.51
R3HDM1-215ENST00000483021 PDS5BQ9NTI5 1447 aa36.96■■■■□ 3.51
R3HDM1-215ENST00000483021 CADPSQ9ULU8 1353 aa36.88■■■■□ 3.49
R3HDM1-215ENST00000483021 RSF1Q96T23 1441 aaPredicted RBP36.76■■■■□ 3.47
R3HDM1-215ENST00000483021 TOP2AP11388 1531 aaKnown RBP36.67■■■■□ 3.46
R3HDM1-215ENST00000483021 MRC2Q9UBG0 1479 aa36.64■■■■□ 3.46
R3HDM1-215ENST00000483021 WDR62O43379 1518 aa36.58■■■■□ 3.45
R3HDM1-215ENST00000483021 CEP164Q9UPV0 1460 aa36.54■■■■□ 3.44
R3HDM1-215ENST00000483021 CFTRP13569 1480 aa36.51■■■■□ 3.44
R3HDM1-215ENST00000483021 FANCD2Q9BXW9 1451 aa36.48■■■■□ 3.43
R3HDM1-215ENST00000483021 PRDM2Q13029 1718 aa36.32■■■■□ 3.4
R3HDM1-215ENST00000483021 CCDC88BA6NC98 1476 aa36.18■■■■□ 3.38
R3HDM1-215ENST00000483021 URB2Q14146 1524 aaKnown RBP36.15■■■■□ 3.38
R3HDM1-215ENST00000483021 TOPBP1Q92547 1522 aa35.81■■■■□ 3.32
R3HDM1-215ENST00000483021 ABCC8Q09428 1581 aa35.81■■■■□ 3.32
R3HDM1-215ENST00000483021 IFT140Q96RY7 1462 aa35.8■■■■□ 3.32
R3HDM1-215ENST00000483021 DNMBPQ6XZF7 1577 aa35.74■■■■□ 3.31
R3HDM1-215ENST00000483021 OSCARQ8IYS5 282 aa35.68■■■■□ 3.3
R3HDM1-215ENST00000483021 ZNF608Q9ULD9 1512 aaPredicted RBP35.65■■■■□ 3.3
R3HDM1-215ENST00000483021 EIF4G3O43432 1585 aaKnown RBP35.56■■■■□ 3.28
R3HDM1-215ENST00000483021 TRIM41Q8WV44 630 aa35.54■■■■□ 3.28
R3HDM1-215ENST00000483021 TARBP1Q13395 1621 aaKnown RBP35.51■■■■□ 3.28
R3HDM1-215ENST00000483021 POLA1P09884 1462 aaPredicted RBP35.45■■■■□ 3.27
R3HDM1-215ENST00000483021 AQRO60306 1485 aaKnown RBP eCLIP35.33■■■■□ 3.25
R3HDM1-215ENST00000483021 CHD1O14646 1710 aa35.28■■■■□ 3.24
R3HDM1-215ENST00000483021 RIMBP3CA6NJZ7 1639 aa35.28■■■■□ 3.24
R3HDM1-215ENST00000483021 RIMBP3BA6NNM3 1639 aa35.28■■■■□ 3.24
R3HDM1-215ENST00000483021 RIMBP3Q9UFD9 1639 aa35.28■■■■□ 3.24
R3HDM1-215ENST00000483021 WDR97A6NE52 1622 aa35.27■■■■□ 3.24
R3HDM1-215ENST00000483021 SOGA1O94964 1423 aa35.26■■■■□ 3.24
R3HDM1-215ENST00000483021 RAD54L2Q9Y4B4 1467 aa35.26■■■■□ 3.23
R3HDM1-215ENST00000483021 FGD5Q6ZNL6 1462 aa35.25■■■■□ 3.23
R3HDM1-215ENST00000483021 CUX1P39880 1505 aa35.23■■■■□ 3.23
R3HDM1-215ENST00000483021 ARHGEF11O15085 1522 aa35.16■■■■□ 3.22
R3HDM1-215ENST00000483021 SUPT5HO00267 1087 aaKnown RBP35.16■■■■□ 3.22
R3HDM1-215ENST00000483021 TDRD9Q8NDG6 1382 aaKnown RBP35.13■■■■□ 3.21
R3HDM1-215ENST00000483021 FBLN2P98095 1184 aa35.04■■■■□ 3.2
R3HDM1-215ENST00000483021 SNAPC4Q5SXM2 1469 aa35.03■■■■□ 3.2
R3HDM1-215ENST00000483021 MAGI1Q96QZ7 1491 aaPredicted RBP35.01■■■■□ 3.19
R3HDM1-215ENST00000483021 GRIN2BQ13224 1484 aa34.98■■■■□ 3.19
R3HDM1-215ENST00000483021 PBRM1Q86U86 1689 aa34.93■■■■□ 3.18
R3HDM1-215ENST00000483021 SYNJ1O43426 1573 aa34.88■■■■□ 3.17
R3HDM1-215ENST00000483021 ABCA10Q8WWZ4 1543 aa34.88■■■■□ 3.17
R3HDM1-215ENST00000483021 GAPVD1Q14C86 1478 aa34.87■■■■□ 3.17
R3HDM1-215ENST00000483021 SYNJ2O15056 1496 aa34.86■■■■□ 3.17
R3HDM1-215ENST00000483021 CLASP1Q7Z460 1538 aa34.86■■■■□ 3.17
R3HDM1-215ENST00000483021 ABCA5Q8WWZ7 1642 aa34.85■■■■□ 3.17
R3HDM1-215ENST00000483021 CHMP7Q8WUX9 453 aaPredicted RBP34.85■■■■□ 3.17
R3HDM1-215ENST00000483021 ARAP1Q96P48 1450 aa34.81■■■■□ 3.16
R3HDM1-215ENST00000483021 BIVM-ERCC5R4GMW8 1640 aa34.81■■■■□ 3.16
R3HDM1-215ENST00000483021 CYB5RLQ6IPT4 315 aa34.79■■■■□ 3.16
R3HDM1-215ENST00000483021 TOP2BQ02880 1626 aa34.77■■■■□ 3.16
R3HDM1-215ENST00000483021 WRNQ14191 1432 aaPredicted RBP eCLIP34.75■■■■□ 3.15
R3HDM1-215ENST00000483021 ADAMTS12P58397 1594 aa34.57■■■■□ 3.13
R3HDM1-215ENST00000483021 GRIN2AQ12879 1464 aa34.54■■■■□ 3.12
R3HDM1-215ENST00000483021 ERICH3Q5RHP9 1530 aa34.48■■■■□ 3.11
R3HDM1-215ENST00000483021 FHAD1B1AJZ9 1412 aa34.44■■■■□ 3.1
R3HDM1-215ENST00000483021 NUP160Q12769 1436 aa34.41■■■■□ 3.1
R3HDM1-215ENST00000483021 CEP170Q5SW79 1584 aa34.4■■■■□ 3.1
R3HDM1-215ENST00000483021 TRHP20396 242 aaPredicted RBP34.37■■■■□ 3.09
R3HDM1-215ENST00000483021 SHROOM2Q13796 1616 aa34.29■■■■□ 3.08
R3HDM1-215ENST00000483021 ERCC6L2Q5T890 1561 aa34.24■■■■□ 3.07
R3HDM1-215ENST00000483021 RUSC2Q8N2Y8 1516 aa34.09■■■■□ 3.05
R3HDM1-215ENST00000483021 KIF27Q86VH2 1401 aa34.06■■■■□ 3.04
R3HDM1-215ENST00000483021 CUL7Q14999 1698 aa34.06■■■■□ 3.04
R3HDM1-215ENST00000483021 PRG4Q92954 1404 aaPredicted RBP34.03■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms