RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 NISCHQ9Y2I1 1504 aa25.96■■□□□ 1.75
CPSF4-212ENST00000482251 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
CPSF4-212ENST00000482251 ABCC9O60706 1549 aa23.06■■□□□ 1.28
CPSF4-212ENST00000482251 RB1CC1Q8TDY2 1594 aa21.99■■□□□ 1.11
CPSF4-212ENST00000482251 NACADO15069 1562 aa21.86■■□□□ 1.09
CPSF4-212ENST00000482251 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
CPSF4-212ENST00000482251 ZCCHC6Q5VYS8 1495 aaKnown RBP21.59■■□□□ 1.05
CPSF4-212ENST00000482251 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
CPSF4-212ENST00000482251 UNC13AQ9UPW8 1703 aa21.55■■□□□ 1.04
CPSF4-212ENST00000482251 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
CPSF4-212ENST00000482251 DCAF1Q9Y4B6 1507 aa21.4■■□□□ 1.02
CPSF4-212ENST00000482251 DNAJC5BQ9UF47 199 aa21.36■■□□□ 1.01
CPSF4-212ENST00000482251 BICRAQ9NZM4 1560 aa21.36■■□□□ 1.01
CPSF4-212ENST00000482251 SCRIBQ14160 1630 aa21.26■□□□□ 0.99
CPSF4-212ENST00000482251 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
CPSF4-212ENST00000482251 EIF4G1Q04637 1599 aaKnown RBP20.82■□□□□ 0.92
CPSF4-212ENST00000482251 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
CPSF4-212ENST00000482251 CECR2Q9BXF3 1484 aa20.71■□□□□ 0.91
CPSF4-212ENST00000482251 SMARCA4P51532 1647 aa20.24■□□□□ 0.83
CPSF4-212ENST00000482251 ATAD2BQ9ULI0 1458 aa20.17■□□□□ 0.82
CPSF4-212ENST00000482251 NCAPD3P42695 1498 aa20.15■□□□□ 0.82
CPSF4-212ENST00000482251 BAZ1AQ9NRL2 1556 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-212ENST00000482251 SMARCA2P51531 1590 aa20.12■□□□□ 0.81
CPSF4-212ENST00000482251 HMGXB3Q12766 1538 aa20.07■□□□□ 0.8
CPSF4-212ENST00000482251 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
CPSF4-212ENST00000482251 BAZ1BQ9UIG0 1483 aaKnown RBP20.02■□□□□ 0.8
CPSF4-212ENST00000482251 PEG3Q9GZU2 1588 aa19.99■□□□□ 0.79
CPSF4-212ENST00000482251 ERCC6Q03468 1493 aa19.88■□□□□ 0.77
CPSF4-212ENST00000482251 NESP48681 1621 aa19.87■□□□□ 0.77
CPSF4-212ENST00000482251 WIZO95785 1651 aa19.84■□□□□ 0.77
CPSF4-212ENST00000482251 CUX2O14529 1486 aa19.71■□□□□ 0.75
CPSF4-212ENST00000482251 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
CPSF4-212ENST00000482251 RSF1Q96T23 1441 aaPredicted RBP19.67■□□□□ 0.74
CPSF4-212ENST00000482251 KIF21AQ7Z4S6 1674 aa19.64■□□□□ 0.73
CPSF4-212ENST00000482251 THOC2Q8NI27 1593 aaKnown RBP19.63■□□□□ 0.73
CPSF4-212ENST00000482251 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.73
CPSF4-212ENST00000482251 CADPSQ9ULU8 1353 aa19.57■□□□□ 0.72
CPSF4-212ENST00000482251 PDS5BQ9NTI5 1447 aa19.56■□□□□ 0.72
CPSF4-212ENST00000482251 DNAJC5Q9H3Z4 198 aa19.55■□□□□ 0.72
CPSF4-212ENST00000482251 MRC2Q9UBG0 1479 aa19.43■□□□□ 0.7
CPSF4-212ENST00000482251 CEP164Q9UPV0 1460 aa19.41■□□□□ 0.7
CPSF4-212ENST00000482251 CFTRP13569 1480 aa19.4■□□□□ 0.7
CPSF4-212ENST00000482251 FANCD2Q9BXW9 1451 aa19.4■□□□□ 0.7
CPSF4-212ENST00000482251 WDR62O43379 1518 aa19.37■□□□□ 0.69
CPSF4-212ENST00000482251 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
CPSF4-212ENST00000482251 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
CPSF4-212ENST00000482251 URB2Q14146 1524 aaKnown RBP19.24■□□□□ 0.67
CPSF4-212ENST00000482251 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
CPSF4-212ENST00000482251 SUPT5HO00267 1087 aaKnown RBP19.01■□□□□ 0.63
CPSF4-212ENST00000482251 DNMBPQ6XZF7 1577 aa19.01■□□□□ 0.63
CPSF4-212ENST00000482251 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
CPSF4-212ENST00000482251 ZNF608Q9ULD9 1512 aaPredicted RBP18.97■□□□□ 0.63
CPSF4-212ENST00000482251 ABCC8Q09428 1581 aa18.94■□□□□ 0.62
CPSF4-212ENST00000482251 EIF4G3O43432 1585 aaKnown RBP18.91■□□□□ 0.62
CPSF4-212ENST00000482251 POLA1P09884 1462 aaPredicted RBP18.88■□□□□ 0.61
CPSF4-212ENST00000482251 TARBP1Q13395 1621 aaKnown RBP18.87■□□□□ 0.61
CPSF4-212ENST00000482251 CUX1P39880 1505 aa18.83■□□□□ 0.6
CPSF4-212ENST00000482251 RAD54L2Q9Y4B4 1467 aa18.83■□□□□ 0.6
CPSF4-212ENST00000482251 AQRO60306 1485 aaKnown RBP eCLIP18.81■□□□□ 0.62e-10■■■■■ 120.8
CPSF4-212ENST00000482251 FGD5Q6ZNL6 1462 aa18.81■□□□□ 0.6
CPSF4-212ENST00000482251 OSCARQ8IYS5 282 aa18.79■□□□□ 0.6
CPSF4-212ENST00000482251 SOGA1O94964 1423 aa18.76■□□□□ 0.59
CPSF4-212ENST00000482251 TRIM41Q8WV44 630 aa18.76■□□□□ 0.59
CPSF4-212ENST00000482251 CHD1O14646 1710 aa18.73■□□□□ 0.59
CPSF4-212ENST00000482251 TDRD9Q8NDG6 1382 aaKnown RBP18.72■□□□□ 0.59
CPSF4-212ENST00000482251 WDR97A6NE52 1622 aa18.68■□□□□ 0.58
CPSF4-212ENST00000482251 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
CPSF4-212ENST00000482251 FBLN2P98095 1184 aa18.65■□□□□ 0.58
CPSF4-212ENST00000482251 RIMBP3CA6NJZ7 1639 aa18.64■□□□□ 0.57
CPSF4-212ENST00000482251 RIMBP3BA6NNM3 1639 aa18.64■□□□□ 0.57
CPSF4-212ENST00000482251 RIMBP3Q9UFD9 1639 aa18.64■□□□□ 0.57
CPSF4-212ENST00000482251 PBRM1Q86U86 1689 aa18.6■□□□□ 0.57
CPSF4-212ENST00000482251 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
CPSF4-212ENST00000482251 ARHGEF11O15085 1522 aa18.59■□□□□ 0.57
CPSF4-212ENST00000482251 GRIN2BQ13224 1484 aa18.58■□□□□ 0.56
CPSF4-212ENST00000482251 WRNQ14191 1432 aaPredicted RBP eCLIP18.57■□□□□ 0.565e-6■■■■■ 29.2
CPSF4-212ENST00000482251 BIVM-ERCC5R4GMW8 1640 aa18.57■□□□□ 0.56
CPSF4-212ENST00000482251 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
CPSF4-212ENST00000482251 TOP2BQ02880 1626 aa18.56■□□□□ 0.56
CPSF4-212ENST00000482251 ABCA5Q8WWZ7 1642 aa18.56■□□□□ 0.56
CPSF4-212ENST00000482251 MAGI1Q96QZ7 1491 aaPredicted RBP18.56■□□□□ 0.56
CPSF4-212ENST00000482251 GAPVD1Q14C86 1478 aa18.55■□□□□ 0.56
CPSF4-212ENST00000482251 SYNJ2O15056 1496 aa18.5■□□□□ 0.55
CPSF4-212ENST00000482251 CHMP7Q8WUX9 453 aaPredicted RBP18.49■□□□□ 0.55
CPSF4-212ENST00000482251 CLASP1Q7Z460 1538 aa18.48■□□□□ 0.55
CPSF4-212ENST00000482251 ARAP1Q96P48 1450 aa18.43■□□□□ 0.54
CPSF4-212ENST00000482251 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
CPSF4-212ENST00000482251 CYB5RLQ6IPT4 315 aa18.4■□□□□ 0.54
CPSF4-212ENST00000482251 GRIN2AQ12879 1464 aa18.37■□□□□ 0.53
CPSF4-212ENST00000482251 ERICH3Q5RHP9 1530 aa18.33■□□□□ 0.53
CPSF4-212ENST00000482251 CEP170Q5SW79 1584 aa18.33■□□□□ 0.52
CPSF4-212ENST00000482251 FHAD1B1AJZ9 1412 aa18.31■□□□□ 0.52
CPSF4-212ENST00000482251 NUP160Q12769 1436 aa18.27■□□□□ 0.52
CPSF4-212ENST00000482251 ERCC6L2Q5T890 1561 aa18.25■□□□□ 0.51
CPSF4-212ENST00000482251 SHROOM2Q13796 1616 aa18.19■□□□□ 0.5
CPSF4-212ENST00000482251 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
CPSF4-212ENST00000482251 RUSC2Q8N2Y8 1516 aa18.17■□□□□ 0.5
CPSF4-212ENST00000482251 TRHP20396 242 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-212ENST00000482251 CUL7Q14999 1698 aa18.14■□□□□ 0.49
CPSF4-212ENST00000482251 IGF1RP08069 1367 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms