RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 NISCHQ9Y2I1 1504 aa25.96■■□□□ 1.75
CPSF4-212ENST00000482251 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
CPSF4-212ENST00000482251 ABCC9O60706 1549 aa23.06■■□□□ 1.28
CPSF4-212ENST00000482251 RB1CC1Q8TDY2 1594 aa21.99■■□□□ 1.11
CPSF4-212ENST00000482251 NACADO15069 1562 aa21.86■■□□□ 1.09
CPSF4-212ENST00000482251 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
CPSF4-212ENST00000482251 ZCCHC6Q5VYS8 1495 aaKnown RBP21.59■■□□□ 1.05
CPSF4-212ENST00000482251 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
CPSF4-212ENST00000482251 UNC13AQ9UPW8 1703 aa21.55■■□□□ 1.04
CPSF4-212ENST00000482251 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
CPSF4-212ENST00000482251 DCAF1Q9Y4B6 1507 aa21.4■■□□□ 1.02
CPSF4-212ENST00000482251 DNAJC5BQ9UF47 199 aa21.36■■□□□ 1.01
CPSF4-212ENST00000482251 BICRAQ9NZM4 1560 aa21.36■■□□□ 1.01
CPSF4-212ENST00000482251 SCRIBQ14160 1630 aa21.26■□□□□ 0.99
CPSF4-212ENST00000482251 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
CPSF4-212ENST00000482251 EIF4G1Q04637 1599 aaKnown RBP20.82■□□□□ 0.92
CPSF4-212ENST00000482251 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
CPSF4-212ENST00000482251 CECR2Q9BXF3 1484 aa20.71■□□□□ 0.91
CPSF4-212ENST00000482251 SMARCA4P51532 1647 aa20.24■□□□□ 0.83
CPSF4-212ENST00000482251 ATAD2BQ9ULI0 1458 aa20.17■□□□□ 0.82
CPSF4-212ENST00000482251 NCAPD3P42695 1498 aa20.15■□□□□ 0.82
CPSF4-212ENST00000482251 BAZ1AQ9NRL2 1556 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-212ENST00000482251 SMARCA2P51531 1590 aa20.12■□□□□ 0.81
CPSF4-212ENST00000482251 HMGXB3Q12766 1538 aa20.07■□□□□ 0.8
CPSF4-212ENST00000482251 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
CPSF4-212ENST00000482251 BAZ1BQ9UIG0 1483 aaKnown RBP20.02■□□□□ 0.8
CPSF4-212ENST00000482251 PEG3Q9GZU2 1588 aa19.99■□□□□ 0.79
CPSF4-212ENST00000482251 ERCC6Q03468 1493 aa19.88■□□□□ 0.77
CPSF4-212ENST00000482251 NESP48681 1621 aa19.87■□□□□ 0.77
CPSF4-212ENST00000482251 WIZO95785 1651 aa19.84■□□□□ 0.77
CPSF4-212ENST00000482251 CUX2O14529 1486 aa19.71■□□□□ 0.75
CPSF4-212ENST00000482251 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
CPSF4-212ENST00000482251 RSF1Q96T23 1441 aaPredicted RBP19.67■□□□□ 0.74
CPSF4-212ENST00000482251 KIF21AQ7Z4S6 1674 aa19.64■□□□□ 0.73
CPSF4-212ENST00000482251 THOC2Q8NI27 1593 aaKnown RBP19.63■□□□□ 0.73
CPSF4-212ENST00000482251 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.73
CPSF4-212ENST00000482251 CADPSQ9ULU8 1353 aa19.57■□□□□ 0.72
CPSF4-212ENST00000482251 PDS5BQ9NTI5 1447 aa19.56■□□□□ 0.72
CPSF4-212ENST00000482251 DNAJC5Q9H3Z4 198 aa19.55■□□□□ 0.72
CPSF4-212ENST00000482251 MRC2Q9UBG0 1479 aa19.43■□□□□ 0.7
CPSF4-212ENST00000482251 CEP164Q9UPV0 1460 aa19.41■□□□□ 0.7
CPSF4-212ENST00000482251 CFTRP13569 1480 aa19.4■□□□□ 0.7
CPSF4-212ENST00000482251 FANCD2Q9BXW9 1451 aa19.4■□□□□ 0.7
CPSF4-212ENST00000482251 WDR62O43379 1518 aa19.37■□□□□ 0.69
CPSF4-212ENST00000482251 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
CPSF4-212ENST00000482251 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
CPSF4-212ENST00000482251 URB2Q14146 1524 aaKnown RBP19.24■□□□□ 0.67
CPSF4-212ENST00000482251 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
CPSF4-212ENST00000482251 SUPT5HO00267 1087 aaKnown RBP19.01■□□□□ 0.63
CPSF4-212ENST00000482251 DNMBPQ6XZF7 1577 aa19.01■□□□□ 0.63
CPSF4-212ENST00000482251 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
CPSF4-212ENST00000482251 ZNF608Q9ULD9 1512 aaPredicted RBP18.97■□□□□ 0.63
CPSF4-212ENST00000482251 ABCC8Q09428 1581 aa18.94■□□□□ 0.62
CPSF4-212ENST00000482251 EIF4G3O43432 1585 aaKnown RBP18.91■□□□□ 0.62
CPSF4-212ENST00000482251 POLA1P09884 1462 aaPredicted RBP18.88■□□□□ 0.61
CPSF4-212ENST00000482251 TARBP1Q13395 1621 aaKnown RBP18.87■□□□□ 0.61
CPSF4-212ENST00000482251 CUX1P39880 1505 aa18.83■□□□□ 0.6
CPSF4-212ENST00000482251 RAD54L2Q9Y4B4 1467 aa18.83■□□□□ 0.6
CPSF4-212ENST00000482251 AQRO60306 1485 aaKnown RBP eCLIP18.81■□□□□ 0.62e-10■■■■■ 120.8
CPSF4-212ENST00000482251 FGD5Q6ZNL6 1462 aa18.81■□□□□ 0.6
CPSF4-212ENST00000482251 OSCARQ8IYS5 282 aa18.79■□□□□ 0.6
CPSF4-212ENST00000482251 SOGA1O94964 1423 aa18.76■□□□□ 0.59
CPSF4-212ENST00000482251 TRIM41Q8WV44 630 aa18.76■□□□□ 0.59
CPSF4-212ENST00000482251 CHD1O14646 1710 aa18.73■□□□□ 0.59
CPSF4-212ENST00000482251 TDRD9Q8NDG6 1382 aaKnown RBP18.72■□□□□ 0.59
CPSF4-212ENST00000482251 WDR97A6NE52 1622 aa18.68■□□□□ 0.58
CPSF4-212ENST00000482251 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
CPSF4-212ENST00000482251 FBLN2P98095 1184 aa18.65■□□□□ 0.58
CPSF4-212ENST00000482251 RIMBP3CA6NJZ7 1639 aa18.64■□□□□ 0.57
CPSF4-212ENST00000482251 RIMBP3BA6NNM3 1639 aa18.64■□□□□ 0.57
CPSF4-212ENST00000482251 RIMBP3Q9UFD9 1639 aa18.64■□□□□ 0.57
CPSF4-212ENST00000482251 PBRM1Q86U86 1689 aa18.6■□□□□ 0.57
CPSF4-212ENST00000482251 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
CPSF4-212ENST00000482251 ARHGEF11O15085 1522 aa18.59■□□□□ 0.57
CPSF4-212ENST00000482251 GRIN2BQ13224 1484 aa18.58■□□□□ 0.56
CPSF4-212ENST00000482251 WRNQ14191 1432 aaPredicted RBP eCLIP18.57■□□□□ 0.565e-6■■■■■ 29.2
CPSF4-212ENST00000482251 BIVM-ERCC5R4GMW8 1640 aa18.57■□□□□ 0.56
CPSF4-212ENST00000482251 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
CPSF4-212ENST00000482251 TOP2BQ02880 1626 aa18.56■□□□□ 0.56
CPSF4-212ENST00000482251 ABCA5Q8WWZ7 1642 aa18.56■□□□□ 0.56
CPSF4-212ENST00000482251 MAGI1Q96QZ7 1491 aaPredicted RBP18.56■□□□□ 0.56
CPSF4-212ENST00000482251 GAPVD1Q14C86 1478 aa18.55■□□□□ 0.56
CPSF4-212ENST00000482251 SYNJ2O15056 1496 aa18.5■□□□□ 0.55
CPSF4-212ENST00000482251 CHMP7Q8WUX9 453 aaPredicted RBP18.49■□□□□ 0.55
CPSF4-212ENST00000482251 CLASP1Q7Z460 1538 aa18.48■□□□□ 0.55
CPSF4-212ENST00000482251 ARAP1Q96P48 1450 aa18.43■□□□□ 0.54
CPSF4-212ENST00000482251 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
CPSF4-212ENST00000482251 CYB5RLQ6IPT4 315 aa18.4■□□□□ 0.54
CPSF4-212ENST00000482251 GRIN2AQ12879 1464 aa18.37■□□□□ 0.53
CPSF4-212ENST00000482251 ERICH3Q5RHP9 1530 aa18.33■□□□□ 0.53
CPSF4-212ENST00000482251 CEP170Q5SW79 1584 aa18.33■□□□□ 0.52
CPSF4-212ENST00000482251 FHAD1B1AJZ9 1412 aa18.31■□□□□ 0.52
CPSF4-212ENST00000482251 NUP160Q12769 1436 aa18.27■□□□□ 0.52
CPSF4-212ENST00000482251 ERCC6L2Q5T890 1561 aa18.25■□□□□ 0.51
CPSF4-212ENST00000482251 SHROOM2Q13796 1616 aa18.19■□□□□ 0.5
CPSF4-212ENST00000482251 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
CPSF4-212ENST00000482251 RUSC2Q8N2Y8 1516 aa18.17■□□□□ 0.5
CPSF4-212ENST00000482251 TRHP20396 242 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-212ENST00000482251 CUL7Q14999 1698 aa18.14■□□□□ 0.49
CPSF4-212ENST00000482251 IGF1RP08069 1367 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms