RNA–Protein interactions for RNA: ENST00000481508.1

SSBP1-210, Transcript of single stranded DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSBP1, Length 989 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-210ENST00000481508 AEBP2Q6ZN18 517 aaPredicted RBP25.93■■□□□ 1.74
SSBP1-210ENST00000481508 NISCHQ9Y2I1 1504 aa25.77■■□□□ 1.72
SSBP1-210ENST00000481508 CHIC1Q5VXU3 224 aa24.72■■□□□ 1.55
SSBP1-210ENST00000481508 ABCC9O60706 1549 aa23.23■■□□□ 1.31
SSBP1-210ENST00000481508 CCDC180Q9P1Z9 1646 aa22.9■■□□□ 1.26
SSBP1-210ENST00000481508 DNAJC5BQ9UF47 199 aa22.42■■□□□ 1.18
SSBP1-210ENST00000481508 SENP3Q9H4L4 574 aaPredicted RBP22.18■■□□□ 1.14
SSBP1-210ENST00000481508 PHF23Q9BUL5 403 aaPredicted RBP21.86■■□□□ 1.09
SSBP1-210ENST00000481508 RB1CC1Q8TDY2 1594 aa21.7■■□□□ 1.06
SSBP1-210ENST00000481508 UNC13AQ9UPW8 1703 aa21.57■■□□□ 1.04
SSBP1-210ENST00000481508 ZCCHC6Q5VYS8 1495 aaKnown RBP21.51■■□□□ 1.03
SSBP1-210ENST00000481508 NACADO15069 1562 aa21.44■■□□□ 1.02
SSBP1-210ENST00000481508 DCAF8L2P0C7V8 631 aa21.41■■□□□ 1.02
SSBP1-210ENST00000481508 PABPN1Q86U42 306 aaKnown RBP eCLIP21.41■■□□□ 1.02
SSBP1-210ENST00000481508 MYO15BQ96JP2 1530 aa21.33■■□□□ 1
SSBP1-210ENST00000481508 DCAF1Q9Y4B6 1507 aa21.29■■□□□ 1
SSBP1-210ENST00000481508 BICRAQ9NZM4 1560 aa21.23■□□□□ 0.99
SSBP1-210ENST00000481508 DNAJC5Q9H3Z4 198 aa21.01■□□□□ 0.95
SSBP1-210ENST00000481508 CC2D2AQ9P2K1 1620 aa20.99■□□□□ 0.95
SSBP1-210ENST00000481508 SCRIBQ14160 1630 aa20.95■□□□□ 0.94
SSBP1-210ENST00000481508 CECR2Q9BXF3 1484 aa20.94■□□□□ 0.94
SSBP1-210ENST00000481508 EIF4G1Q04637 1599 aaKnown RBP20.71■□□□□ 0.91
SSBP1-210ENST00000481508 FOXD1Q16676 465 aa20.62■□□□□ 0.89
SSBP1-210ENST00000481508 SHROOM4Q9ULL8 1493 aa20.62■□□□□ 0.89
SSBP1-210ENST00000481508 CUX2O14529 1486 aa20.23■□□□□ 0.83
SSBP1-210ENST00000481508 ERCC6Q03468 1493 aa20.04■□□□□ 0.8
SSBP1-210ENST00000481508 SMARCA4P51532 1647 aa20.02■□□□□ 0.79
SSBP1-210ENST00000481508 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
SSBP1-210ENST00000481508 MROH2BQ7Z745 1585 aa19.91■□□□□ 0.78
SSBP1-210ENST00000481508 TRIM41Q8WV44 630 aa19.88■□□□□ 0.77
SSBP1-210ENST00000481508 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
SSBP1-210ENST00000481508 THOC2Q8NI27 1593 aaKnown RBP19.8■□□□□ 0.76
SSBP1-210ENST00000481508 NESP48681 1621 aa19.79■□□□□ 0.76
SSBP1-210ENST00000481508 SMARCA2P51531 1590 aa19.78■□□□□ 0.76
SSBP1-210ENST00000481508 PEG3Q9GZU2 1588 aa19.78■□□□□ 0.76
SSBP1-210ENST00000481508 PLPPR3Q6T4P5 718 aa19.78■□□□□ 0.76
SSBP1-210ENST00000481508 NCAPD3P42695 1498 aa19.78■□□□□ 0.76
SSBP1-210ENST00000481508 WIZO95785 1651 aa19.74■□□□□ 0.75
SSBP1-210ENST00000481508 HMGXB3Q12766 1538 aa19.72■□□□□ 0.75
SSBP1-210ENST00000481508 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
SSBP1-210ENST00000481508 RSF1Q96T23 1441 aaPredicted RBP19.66■□□□□ 0.74
SSBP1-210ENST00000481508 KIF21AQ7Z4S6 1674 aa19.65■□□□□ 0.74
SSBP1-210ENST00000481508 TOP2AP11388 1531 aaKnown RBP19.46■□□□□ 0.71
SSBP1-210ENST00000481508 LAMC3Q9Y6N6 1575 aa19.41■□□□□ 0.7
SSBP1-210ENST00000481508 MSH5O43196 834 aa19.34■□□□□ 0.69
SSBP1-210ENST00000481508 PPP6R1Q9UPN7 881 aa19.29■□□□□ 0.68
SSBP1-210ENST00000481508 PIAS4Q8N2W9 510 aaPredicted RBP19.24■□□□□ 0.67
SSBP1-210ENST00000481508 CCDC88BA6NC98 1476 aa19.23■□□□□ 0.67
SSBP1-210ENST00000481508 WDR62O43379 1518 aa19.23■□□□□ 0.67
SSBP1-210ENST00000481508 RIMBP3CA6NJZ7 1639 aa19.21■□□□□ 0.67
SSBP1-210ENST00000481508 RIMBP3BA6NNM3 1639 aa19.21■□□□□ 0.67
SSBP1-210ENST00000481508 RIMBP3Q9UFD9 1639 aa19.21■□□□□ 0.67
SSBP1-210ENST00000481508 MRC2Q9UBG0 1479 aa19.2■□□□□ 0.66
SSBP1-210ENST00000481508 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
SSBP1-210ENST00000481508 SUPT5HO00267 1087 aaKnown RBP19.19■□□□□ 0.66
SSBP1-210ENST00000481508 ADRA2BP18089 450 aa19.19■□□□□ 0.66
SSBP1-210ENST00000481508 PDS5BQ9NTI5 1447 aa19.18■□□□□ 0.66
SSBP1-210ENST00000481508 CFTRP13569 1480 aa19.13■□□□□ 0.65
SSBP1-210ENST00000481508 PRDM2Q13029 1718 aa19.11■□□□□ 0.65
SSBP1-210ENST00000481508 OSCARQ8IYS5 282 aa19.03■□□□□ 0.64
SSBP1-210ENST00000481508 FANCD2Q9BXW9 1451 aa19.02■□□□□ 0.63
SSBP1-210ENST00000481508 ARHGEF11O15085 1522 aa18.97■□□□□ 0.63
SSBP1-210ENST00000481508 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
SSBP1-210ENST00000481508 URB2Q14146 1524 aaKnown RBP18.88■□□□□ 0.61
SSBP1-210ENST00000481508 CHD1O14646 1710 aa18.8■□□□□ 0.6
SSBP1-210ENST00000481508 TRHP20396 242 aaPredicted RBP18.77■□□□□ 0.6
SSBP1-210ENST00000481508 TOPBP1Q92547 1522 aa18.75■□□□□ 0.59
SSBP1-210ENST00000481508 ARAP1Q96P48 1450 aa18.75■□□□□ 0.59
SSBP1-210ENST00000481508 ZNF608Q9ULD9 1512 aaPredicted RBP18.74■□□□□ 0.59
SSBP1-210ENST00000481508 POTEDQ86YR6 584 aa18.74■□□□□ 0.59
SSBP1-210ENST00000481508 DNMBPQ6XZF7 1577 aa18.73■□□□□ 0.59
SSBP1-210ENST00000481508 CYB5RLQ6IPT4 315 aa18.72■□□□□ 0.59
SSBP1-210ENST00000481508 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
SSBP1-210ENST00000481508 CUX1P39880 1505 aa18.67■□□□□ 0.58
SSBP1-210ENST00000481508 ABCC8Q09428 1581 aa18.64■□□□□ 0.57
SSBP1-210ENST00000481508 POLA1P09884 1462 aaPredicted RBP18.59■□□□□ 0.57
SSBP1-210ENST00000481508 TARBP1Q13395 1621 aaKnown RBP18.57■□□□□ 0.56
SSBP1-210ENST00000481508 FGD5Q6ZNL6 1462 aa18.57■□□□□ 0.56
SSBP1-210ENST00000481508 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
SSBP1-210ENST00000481508 IFT140Q96RY7 1462 aa18.56■□□□□ 0.56
SSBP1-210ENST00000481508 BIVM-ERCC5R4GMW8 1640 aa18.54■□□□□ 0.56
SSBP1-210ENST00000481508 RAD54L2Q9Y4B4 1467 aa18.53■□□□□ 0.56
SSBP1-210ENST00000481508 TOP2BQ02880 1626 aa18.51■□□□□ 0.55
SSBP1-210ENST00000481508 WRNQ14191 1432 aaPredicted RBP eCLIP18.5■□□□□ 0.55
SSBP1-210ENST00000481508 WDR97A6NE52 1622 aa18.49■□□□□ 0.55
SSBP1-210ENST00000481508 SOGA1O94964 1423 aa18.46■□□□□ 0.55
SSBP1-210ENST00000481508 AQRO60306 1485 aaKnown RBP eCLIP18.41■□□□□ 0.544e-9■□□□□ 8.1
SSBP1-210ENST00000481508 CLASP1Q7Z460 1538 aa18.39■□□□□ 0.53
SSBP1-210ENST00000481508 TDRD9Q8NDG6 1382 aaKnown RBP18.38■□□□□ 0.53
SSBP1-210ENST00000481508 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
SSBP1-210ENST00000481508 ABCA5Q8WWZ7 1642 aa18.35■□□□□ 0.53
SSBP1-210ENST00000481508 FBLN2P98095 1184 aa18.35■□□□□ 0.53
SSBP1-210ENST00000481508 PBRM1Q86U86 1689 aa18.34■□□□□ 0.53
SSBP1-210ENST00000481508 GAPVD1Q14C86 1478 aa18.26■□□□□ 0.51
SSBP1-210ENST00000481508 SNAPC4Q5SXM2 1469 aa18.26■□□□□ 0.51
SSBP1-210ENST00000481508 GRIN2BQ13224 1484 aa18.24■□□□□ 0.51
SSBP1-210ENST00000481508 KIF13AQ9H1H9 1805 aa18.23■□□□□ 0.51
SSBP1-210ENST00000481508 MAGI1Q96QZ7 1491 aaPredicted RBP18.19■□□□□ 0.5
SSBP1-210ENST00000481508 ILDR1Q86SU0 546 aaPredicted RBP18.16■□□□□ 0.5
SSBP1-210ENST00000481508 ADAMTS12P58397 1594 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms