RNA–Protein interactions for RNA: ENST00000480539.1

ABCF3-213, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 2

Gene ABCF3, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-213ENST00000480539 NISCHQ9Y2I1 1504 aa36.54■■■■□ 3.44
ABCF3-213ENST00000480539 CCDC180Q9P1Z9 1646 aa32.43■■■□□ 2.78
ABCF3-213ENST00000480539 ABCC9O60706 1549 aa31.55■■■□□ 2.64
ABCF3-213ENST00000480539 ZCCHC6Q5VYS8 1495 aaKnown RBP30.52■■■□□ 2.48
ABCF3-213ENST00000480539 RB1CC1Q8TDY2 1594 aa30.41■■■□□ 2.46
ABCF3-213ENST00000480539 DCAF8L2P0C7V8 631 aa30.4■■■□□ 2.46
ABCF3-213ENST00000480539 NACADO15069 1562 aa30.39■■■□□ 2.46
ABCF3-213ENST00000480539 MYO15BQ96JP2 1530 aa30.24■■■□□ 2.43
ABCF3-213ENST00000480539 DCAF1Q9Y4B6 1507 aa30.21■■■□□ 2.43
ABCF3-213ENST00000480539 UNC13AQ9UPW8 1703 aa29.76■■■□□ 2.36
ABCF3-213ENST00000480539 SCRIBQ14160 1630 aa29.67■■■□□ 2.34
ABCF3-213ENST00000480539 BICRAQ9NZM4 1560 aa29.5■■■□□ 2.31
ABCF3-213ENST00000480539 PABPN1Q86U42 306 aaKnown RBP eCLIP29.47■■■□□ 2.314e-7■■□□□ 14.5
ABCF3-213ENST00000480539 SHROOM4Q9ULL8 1493 aa29.17■■■□□ 2.26
ABCF3-213ENST00000480539 EIF4G1Q04637 1599 aaKnown RBP28.71■■■□□ 2.19
ABCF3-213ENST00000480539 DNAJC5BQ9UF47 199 aa28.69■■■□□ 2.18
ABCF3-213ENST00000480539 CC2D2AQ9P2K1 1620 aa28.54■■■□□ 2.16
ABCF3-213ENST00000480539 CECR2Q9BXF3 1484 aa28.46■■■□□ 2.15
ABCF3-213ENST00000480539 SMARCA4P51532 1647 aa28.36■■■□□ 2.13
ABCF3-213ENST00000480539 BAZ1AQ9NRL2 1556 aaPredicted RBP28.32■■■□□ 2.12
ABCF3-213ENST00000480539 MROH2BQ7Z745 1585 aa28.2■■■□□ 2.1
ABCF3-213ENST00000480539 ATAD2BQ9ULI0 1458 aa28.1■■■□□ 2.09
ABCF3-213ENST00000480539 SMARCA2P51531 1590 aa28.08■■■□□ 2.09
ABCF3-213ENST00000480539 PEG3Q9GZU2 1588 aa28.03■■■□□ 2.08
ABCF3-213ENST00000480539 NCAPD3P42695 1498 aa28.01■■■□□ 2.07
ABCF3-213ENST00000480539 HMGXB3Q12766 1538 aa27.97■■■□□ 2.07
ABCF3-213ENST00000480539 WIZO95785 1651 aa27.92■■■□□ 2.06
ABCF3-213ENST00000480539 BAZ1BQ9UIG0 1483 aaKnown RBP27.92■■■□□ 2.06
ABCF3-213ENST00000480539 RSF1Q96T23 1441 aaPredicted RBP27.91■■■□□ 2.06
ABCF3-213ENST00000480539 TOP2AP11388 1531 aaKnown RBP27.63■■■□□ 2.01
ABCF3-213ENST00000480539 NESP48681 1621 aa27.38■■□□□ 1.97
ABCF3-213ENST00000480539 SUPT5HO00267 1087 aaKnown RBP27.34■■□□□ 1.97
ABCF3-213ENST00000480539 LAMC3Q9Y6N6 1575 aa27.29■■□□□ 1.96
ABCF3-213ENST00000480539 CCDC88BA6NC98 1476 aa27.25■■□□□ 1.95
ABCF3-213ENST00000480539 CADPSQ9ULU8 1353 aa27.21■■□□□ 1.95
ABCF3-213ENST00000480539 ERCC6Q03468 1493 aa27.18■■□□□ 1.94
ABCF3-213ENST00000480539 CFTRP13569 1480 aa27.12■■□□□ 1.93
ABCF3-213ENST00000480539 KIF21AQ7Z4S6 1674 aa27.08■■□□□ 1.93
ABCF3-213ENST00000480539 PDS5BQ9NTI5 1447 aa27.06■■□□□ 1.92
ABCF3-213ENST00000480539 PRDM2Q13029 1718 aa26.99■■□□□ 1.91
ABCF3-213ENST00000480539 FANCD2Q9BXW9 1451 aa26.96■■□□□ 1.91
ABCF3-213ENST00000480539 THOC2Q8NI27 1593 aaKnown RBP26.94■■□□□ 1.9
ABCF3-213ENST00000480539 CEP164Q9UPV0 1460 aa26.92■■□□□ 1.9
ABCF3-213ENST00000480539 MRC2Q9UBG0 1479 aa26.84■■□□□ 1.89
ABCF3-213ENST00000480539 CUX2O14529 1486 aa26.78■■□□□ 1.88
ABCF3-213ENST00000480539 WDR62O43379 1518 aa26.75■■□□□ 1.87
ABCF3-213ENST00000480539 URB2Q14146 1524 aaKnown RBP26.7■■□□□ 1.86
ABCF3-213ENST00000480539 TOPBP1Q92547 1522 aa26.55■■□□□ 1.84
ABCF3-213ENST00000480539 DNMBPQ6XZF7 1577 aa26.55■■□□□ 1.84
ABCF3-213ENST00000480539 ABCC8Q09428 1581 aa26.48■■□□□ 1.83
ABCF3-213ENST00000480539 CUX1P39880 1505 aa26.44■■□□□ 1.82
ABCF3-213ENST00000480539 POLA1P09884 1462 aaPredicted RBP26.35■■□□□ 1.81
ABCF3-213ENST00000480539 WRNQ14191 1432 aaPredicted RBP eCLIP26.32■■□□□ 1.8
ABCF3-213ENST00000480539 FGD5Q6ZNL6 1462 aa26.32■■□□□ 1.8
ABCF3-213ENST00000480539 IFT140Q96RY7 1462 aa26.31■■□□□ 1.8
ABCF3-213ENST00000480539 SYNJ1O43426 1573 aa26.3■■□□□ 1.8
ABCF3-213ENST00000480539 BIVM-ERCC5R4GMW8 1640 aa26.27■■□□□ 1.8
ABCF3-213ENST00000480539 TOP2BQ02880 1626 aa26.26■■□□□ 1.79
ABCF3-213ENST00000480539 TARBP1Q13395 1621 aaKnown RBP26.25■■□□□ 1.79
ABCF3-213ENST00000480539 RAD54L2Q9Y4B4 1467 aa26.23■■□□□ 1.79
ABCF3-213ENST00000480539 ZNF608Q9ULD9 1512 aaPredicted RBP26.22■■□□□ 1.79
ABCF3-213ENST00000480539 SOGA1O94964 1423 aa26.19■■□□□ 1.78
ABCF3-213ENST00000480539 EIF4G3O43432 1585 aaKnown RBP26.17■■□□□ 1.78
ABCF3-213ENST00000480539 WDR97A6NE52 1622 aa26.14■■□□□ 1.77
ABCF3-213ENST00000480539 AQRO60306 1485 aaKnown RBP eCLIP26.06■■□□□ 1.76
ABCF3-213ENST00000480539 ABCA10Q8WWZ4 1543 aa26.04■■□□□ 1.76
ABCF3-213ENST00000480539 TDRD9Q8NDG6 1382 aaKnown RBP26.04■■□□□ 1.76
ABCF3-213ENST00000480539 ABCA5Q8WWZ7 1642 aa25.97■■□□□ 1.75
ABCF3-213ENST00000480539 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
ABCF3-213ENST00000480539 GAPVD1Q14C86 1478 aa25.91■■□□□ 1.74
ABCF3-213ENST00000480539 GRIN2BQ13224 1484 aa25.89■■□□□ 1.73
ABCF3-213ENST00000480539 SNAPC4Q5SXM2 1469 aa25.88■■□□□ 1.73
ABCF3-213ENST00000480539 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
ABCF3-213ENST00000480539 CHD1O14646 1710 aa25.79■■□□□ 1.72
ABCF3-213ENST00000480539 TRIM41Q8WV44 630 aa25.77■■□□□ 1.72
ABCF3-213ENST00000480539 ADAMTS12P58397 1594 aa25.73■■□□□ 1.71
ABCF3-213ENST00000480539 ERICH3Q5RHP9 1530 aa25.73■■□□□ 1.71
ABCF3-213ENST00000480539 KIF27Q86VH2 1401 aa25.72■■□□□ 1.71
ABCF3-213ENST00000480539 SYNJ2O15056 1496 aa25.7■■□□□ 1.7
ABCF3-213ENST00000480539 FBLN2P98095 1184 aa25.69■■□□□ 1.7
ABCF3-213ENST00000480539 DNAJC5Q9H3Z4 198 aa25.63■■□□□ 1.69
ABCF3-213ENST00000480539 OSCARQ8IYS5 282 aa25.62■■□□□ 1.69
ABCF3-213ENST00000480539 CHMP7Q8WUX9 453 aaPredicted RBP25.62■■□□□ 1.69
ABCF3-213ENST00000480539 FHAD1B1AJZ9 1412 aa25.62■■□□□ 1.69
ABCF3-213ENST00000480539 CHIC1Q5VXU3 224 aa25.6■■□□□ 1.69
ABCF3-213ENST00000480539 RUSC2Q8N2Y8 1516 aa25.59■■□□□ 1.69
ABCF3-213ENST00000480539 GRIN2AQ12879 1464 aa25.58■■□□□ 1.69
ABCF3-213ENST00000480539 CUL7Q14999 1698 aa25.58■■□□□ 1.68
ABCF3-213ENST00000480539 IGF1RP08069 1367 aa25.56■■□□□ 1.68
ABCF3-213ENST00000480539 CLASP1Q7Z460 1538 aa25.49■■□□□ 1.67
ABCF3-213ENST00000480539 CEP170Q5SW79 1584 aa25.48■■□□□ 1.67
ABCF3-213ENST00000480539 NUP160Q12769 1436 aa25.44■■□□□ 1.66
ABCF3-213ENST00000480539 CARMIL1Q5VZK9 1371 aa25.44■■□□□ 1.66
ABCF3-213ENST00000480539 EEA1Q15075 1411 aa25.35■■□□□ 1.65
ABCF3-213ENST00000480539 RAPGEF2Q9Y4G8 1499 aa25.34■■□□□ 1.65
ABCF3-213ENST00000480539 RIMBP3CA6NJZ7 1639 aa25.33■■□□□ 1.65
ABCF3-213ENST00000480539 RIMBP3BA6NNM3 1639 aa25.33■■□□□ 1.65
ABCF3-213ENST00000480539 RIMBP3Q9UFD9 1639 aa25.33■■□□□ 1.65
ABCF3-213ENST00000480539 ARHGEF11O15085 1522 aa25.32■■□□□ 1.64
ABCF3-213ENST00000480539 FAM9AQ8IZU1 332 aaPredicted RBP25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms