RNA–Protein interactions for RNA: ENST00000480209.1

NUDCD3-208, Transcript of NudC domain containing 3, humanhuman

TSL 3

Gene NUDCD3, Length 488 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-208ENST00000480209 NISCHQ9Y2I1 1504 aa21.34■■□□□ 1.01
NUDCD3-208ENST00000480209 CCDC180Q9P1Z9 1646 aa18.87■□□□□ 0.61
NUDCD3-208ENST00000480209 ABCC9O60706 1549 aa18.03■□□□□ 0.48
NUDCD3-208ENST00000480209 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
NUDCD3-208ENST00000480209 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
NUDCD3-208ENST00000480209 NACADO15069 1562 aa17.56■□□□□ 0.4
NUDCD3-208ENST00000480209 MYO15BQ96JP2 1530 aa17.56■□□□□ 0.4
NUDCD3-208ENST00000480209 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
NUDCD3-208ENST00000480209 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
NUDCD3-208ENST00000480209 UNC13AQ9UPW8 1703 aa17.3■□□□□ 0.36
NUDCD3-208ENST00000480209 SCRIBQ14160 1630 aa17.26■□□□□ 0.35
NUDCD3-208ENST00000480209 SHROOM4Q9ULL8 1493 aa17.09■□□□□ 0.33
NUDCD3-208ENST00000480209 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
NUDCD3-208ENST00000480209 PABPN1Q86U42 306 aaKnown RBP eCLIP16.85■□□□□ 0.29
NUDCD3-208ENST00000480209 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
NUDCD3-208ENST00000480209 AEBP2Q6ZN18 517 aaPredicted RBP16.67■□□□□ 0.26
NUDCD3-208ENST00000480209 CECR2Q9BXF3 1484 aa16.61■□□□□ 0.25
NUDCD3-208ENST00000480209 SMARCA4P51532 1647 aa16.53■□□□□ 0.24
NUDCD3-208ENST00000480209 EIF4G1Q04637 1599 aaKnown RBP16.52■□□□□ 0.24
NUDCD3-208ENST00000480209 MROH2BQ7Z745 1585 aa16.5■□□□□ 0.23
NUDCD3-208ENST00000480209 BAZ1AQ9NRL2 1556 aaPredicted RBP16.5■□□□□ 0.23
NUDCD3-208ENST00000480209 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
NUDCD3-208ENST00000480209 WIZO95785 1651 aa16.38■□□□□ 0.21
NUDCD3-208ENST00000480209 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
NUDCD3-208ENST00000480209 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
NUDCD3-208ENST00000480209 ATAD2BQ9ULI0 1458 aa16.27■□□□□ 0.19
NUDCD3-208ENST00000480209 SMARCA2P51531 1590 aa16.26■□□□□ 0.19
NUDCD3-208ENST00000480209 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
NUDCD3-208ENST00000480209 SUPT5HO00267 1087 aaKnown RBP16.18■□□□□ 0.18
NUDCD3-208ENST00000480209 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
NUDCD3-208ENST00000480209 NCAPD3P42695 1498 aa16.17■□□□□ 0.18
NUDCD3-208ENST00000480209 DNAJC5BQ9UF47 199 aa16.17■□□□□ 0.18
NUDCD3-208ENST00000480209 BAZ1BQ9UIG0 1483 aaKnown RBP16.15■□□□□ 0.18
NUDCD3-208ENST00000480209 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
NUDCD3-208ENST00000480209 PRDM2Q13029 1718 aa15.81■□□□□ 0.12
NUDCD3-208ENST00000480209 NESP48681 1621 aa15.76■□□□□ 0.11
NUDCD3-208ENST00000480209 CFTRP13569 1480 aa15.73■□□□□ 0.11
NUDCD3-208ENST00000480209 LAMC3Q9Y6N6 1575 aa15.73■□□□□ 0.11
NUDCD3-208ENST00000480209 CADPSQ9ULU8 1353 aa15.69■□□□□ 0.1
NUDCD3-208ENST00000480209 KIF21AQ7Z4S6 1674 aa15.67■□□□□ 0.1
NUDCD3-208ENST00000480209 FANCD2Q9BXW9 1451 aa15.57■□□□□ 0.08
NUDCD3-208ENST00000480209 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
NUDCD3-208ENST00000480209 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.07
NUDCD3-208ENST00000480209 PDS5BQ9NTI5 1447 aa15.51■□□□□ 0.07
NUDCD3-208ENST00000480209 THOC2Q8NI27 1593 aaKnown RBP15.49■□□□□ 0.07
NUDCD3-208ENST00000480209 SYNJ1O43426 1573 aa15.48■□□□□ 0.07
NUDCD3-208ENST00000480209 CUX1P39880 1505 aa15.46■□□□□ 0.07
NUDCD3-208ENST00000480209 BIVM-ERCC5R4GMW8 1640 aa15.45■□□□□ 0.06
NUDCD3-208ENST00000480209 ERCC6Q03468 1493 aa15.45■□□□□ 0.06
NUDCD3-208ENST00000480209 URB2Q14146 1524 aaKnown RBP15.44■□□□□ 0.06
NUDCD3-208ENST00000480209 WRNQ14191 1432 aaPredicted RBP eCLIP15.43■□□□□ 0.06
NUDCD3-208ENST00000480209 DNMBPQ6XZF7 1577 aa15.42■□□□□ 0.06
NUDCD3-208ENST00000480209 MRC2Q9UBG0 1479 aa15.42■□□□□ 0.06
NUDCD3-208ENST00000480209 TOP2BQ02880 1626 aa15.42■□□□□ 0.06
NUDCD3-208ENST00000480209 WDR62O43379 1518 aa15.39■□□□□ 0.05
NUDCD3-208ENST00000480209 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
NUDCD3-208ENST00000480209 FGD5Q6ZNL6 1462 aa15.31■□□□□ 0.04
NUDCD3-208ENST00000480209 WDR97A6NE52 1622 aa15.29■□□□□ 0.04
NUDCD3-208ENST00000480209 POLA1P09884 1462 aaPredicted RBP15.29■□□□□ 0.04
NUDCD3-208ENST00000480209 TARBP1Q13395 1621 aaKnown RBP15.25■□□□□ 0.03
NUDCD3-208ENST00000480209 CUX2O14529 1486 aa15.25■□□□□ 0.03
NUDCD3-208ENST00000480209 RAD54L2Q9Y4B4 1467 aa15.22■□□□□ 0.03
NUDCD3-208ENST00000480209 TRIM41Q8WV44 630 aa15.21■□□□□ 0.03
NUDCD3-208ENST00000480209 ABCA10Q8WWZ4 1543 aa15.16■□□□□ 0.02
NUDCD3-208ENST00000480209 ABCA5Q8WWZ7 1642 aa15.15■□□□□ 0.02
NUDCD3-208ENST00000480209 SOGA1O94964 1423 aa15.15■□□□□ 0.02
NUDCD3-208ENST00000480209 IFT140Q96RY7 1462 aa15.14■□□□□ 0.01
NUDCD3-208ENST00000480209 RUSC2Q8N2Y8 1516 aa15.13■□□□□ 0.01
NUDCD3-208ENST00000480209 EIF4G3O43432 1585 aaKnown RBP15.12■□□□□ 0.01
NUDCD3-208ENST00000480209 PBRM1Q86U86 1689 aa15.12■□□□□ 0.01
NUDCD3-208ENST00000480209 ZNF608Q9ULD9 1512 aaPredicted RBP15.12■□□□□ 0.01
NUDCD3-208ENST00000480209 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
NUDCD3-208ENST00000480209 AQRO60306 1485 aaKnown RBP eCLIP15.02■□□□□ -0
NUDCD3-208ENST00000480209 KIF27Q86VH2 1401 aa15.02■□□□□ -0
NUDCD3-208ENST00000480209 GAPVD1Q14C86 1478 aa15.01□□□□□ -0.01
NUDCD3-208ENST00000480209 EEA1Q15075 1411 aa14.98□□□□□ -0.01
NUDCD3-208ENST00000480209 ERICH3Q5RHP9 1530 aa14.97□□□□□ -0.01
NUDCD3-208ENST00000480209 ADAMTS12P58397 1594 aa14.97□□□□□ -0.01
NUDCD3-208ENST00000480209 CUL7Q14999 1698 aa14.97□□□□□ -0.01
NUDCD3-208ENST00000480209 GRIN2BQ13224 1484 aa14.95□□□□□ -0.02
NUDCD3-208ENST00000480209 FAM9AQ8IZU1 332 aaPredicted RBP14.95□□□□□ -0.02
NUDCD3-208ENST00000480209 SNAPC4Q5SXM2 1469 aa14.94□□□□□ -0.02
NUDCD3-208ENST00000480209 KIF21BO75037 1637 aa14.92□□□□□ -0.02
NUDCD3-208ENST00000480209 IGF1RP08069 1367 aa14.92□□□□□ -0.02
NUDCD3-208ENST00000480209 CHD1O14646 1710 aa14.9□□□□□ -0.02
NUDCD3-208ENST00000480209 PRXQ9BXM0 1461 aa14.89□□□□□ -0.03
NUDCD3-208ENST00000480209 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
NUDCD3-208ENST00000480209 PHF23Q9BUL5 403 aaPredicted RBP14.88□□□□□ -0.03
NUDCD3-208ENST00000480209 CSRNP3Q8WYN3 585 aa14.87□□□□□ -0.03
NUDCD3-208ENST00000480209 RAPGEF2Q9Y4G8 1499 aa14.86□□□□□ -0.03
NUDCD3-208ENST00000480209 FHAD1B1AJZ9 1412 aa14.83□□□□□ -0.03
NUDCD3-208ENST00000480209 CARMIL1Q5VZK9 1371 aa14.83□□□□□ -0.04
NUDCD3-208ENST00000480209 SYNJ2O15056 1496 aa14.82□□□□□ -0.04
NUDCD3-208ENST00000480209 CTTNBP2Q8WZ74 1663 aa14.81□□□□□ -0.04
NUDCD3-208ENST00000480209 GOLGA3Q08378 1498 aa14.8□□□□□ -0.04
NUDCD3-208ENST00000480209 GRIN2AQ12879 1464 aa14.8□□□□□ -0.04
NUDCD3-208ENST00000480209 CEP170Q5SW79 1584 aa14.78□□□□□ -0.04
NUDCD3-208ENST00000480209 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
NUDCD3-208ENST00000480209 LOC105371045A0A1W2PR82 267 aa14.73□□□□□ -0.05
NUDCD3-208ENST00000480209 NUP160Q12769 1436 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms