RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 NISCHQ9Y2I1 1504 aa35.4■■■■□ 3.26
CCDC88B-207ENST00000479965 SHROOM4Q9ULL8 1493 aa31.79■■■□□ 2.68
CCDC88B-207ENST00000479965 SUPT5HO00267 1087 aaKnown RBP31.68■■■□□ 2.66
CCDC88B-207ENST00000479965 HRCP23327 699 aa31.64■■■□□ 2.66
CCDC88B-207ENST00000479965 PCGF6Q9BYE7 350 aa31.28■■■□□ 2.6
CCDC88B-207ENST00000479965 PPARGC1BQ86YN6 1023 aaKnown RBP31.21■■■□□ 2.59
CCDC88B-207ENST00000479965 MYO15BQ96JP2 1530 aa30.96■■■□□ 2.55
CCDC88B-207ENST00000479965 CHIC1Q5VXU3 224 aa30.88■■■□□ 2.53
CCDC88B-207ENST00000479965 LOC105371045A0A1W2PR82 267 aa30.34■■■□□ 2.45
CCDC88B-207ENST00000479965 PELP1Q8IZL8 1130 aaKnown RBP30.25■■■□□ 2.43
CCDC88B-207ENST00000479965 DCAF8L2P0C7V8 631 aa30.19■■■□□ 2.42
CCDC88B-207ENST00000479965 DCAF1Q9Y4B6 1507 aa30.13■■■□□ 2.41
CCDC88B-207ENST00000479965 TRIM26Q12899 539 aaPredicted RBP30.11■■■□□ 2.41
CCDC88B-207ENST00000479965 ZCCHC6Q5VYS8 1495 aaKnown RBP30.06■■■□□ 2.4
CCDC88B-207ENST00000479965 SCAF1Q9H7N4 1312 aaKnown RBP29.93■■■□□ 2.38
CCDC88B-207ENST00000479965 ZEB1P37275 1124 aaPredicted RBP29.77■■■□□ 2.36
CCDC88B-207ENST00000479965 CCDC180Q9P1Z9 1646 aa29.69■■■□□ 2.34
CCDC88B-207ENST00000479965 EHMT2Q96KQ7 1210 aa29.42■■■□□ 2.3
CCDC88B-207ENST00000479965 FAM9AQ8IZU1 332 aaPredicted RBP29.38■■■□□ 2.29
CCDC88B-207ENST00000479965 ACIN1Q9UKV3 1341 aaKnown RBP29.21■■■□□ 2.27
CCDC88B-207ENST00000479965 NEUROD1Q13562 356 aa29.2■■■□□ 2.27
CCDC88B-207ENST00000479965 TRIM41Q8WV44 630 aa29.2■■■□□ 2.26
CCDC88B-207ENST00000479965 GTF3C3Q9Y5Q9 886 aa29.08■■■□□ 2.25
CCDC88B-207ENST00000479965 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.03■■■□□ 2.24
CCDC88B-207ENST00000479965 MYT1Q01538 1121 aa28.98■■■□□ 2.23
CCDC88B-207ENST00000479965 CCER1Q8TC90 406 aaPredicted RBP28.98■■■□□ 2.23
CCDC88B-207ENST00000479965 CENPBP07199 599 aaPredicted RBP28.93■■■□□ 2.22
CCDC88B-207ENST00000479965 DIEXFQ68CQ4 756 aaKnown RBP28.87■■■□□ 2.21
CCDC88B-207ENST00000479965 TTBK1Q5TCY1 1321 aaPredicted RBP28.67■■■□□ 2.18
CCDC88B-207ENST00000479965 YTHDC1Q96MU7 727 aaKnown RBP28.6■■■□□ 2.17
CCDC88B-207ENST00000479965 RSF1Q96T23 1441 aaPredicted RBP28.58■■■□□ 2.17
CCDC88B-207ENST00000479965 ABCC9O60706 1549 aa28.52■■■□□ 2.16
CCDC88B-207ENST00000479965 RB1CC1Q8TDY2 1594 aa28.44■■■□□ 2.14
CCDC88B-207ENST00000479965 ZNF316A6NFI3 1004 aaPredicted RBP28.27■■■□□ 2.12
CCDC88B-207ENST00000479965 SCRIBQ14160 1630 aa28.21■■■□□ 2.11
CCDC88B-207ENST00000479965 MIER1Q8N108 512 aa28.14■■■□□ 2.09
CCDC88B-207ENST00000479965 HNRNPUL2Q1KMD3 747 aaKnown RBP27.87■■■□□ 2.05
CCDC88B-207ENST00000479965 CECR2Q9BXF3 1484 aa27.86■■■□□ 2.05
CCDC88B-207ENST00000479965 CEP162Q5TB80 1403 aa27.81■■■□□ 2.04
CCDC88B-207ENST00000479965 UBTFP17480 764 aaKnown RBP27.81■■■□□ 2.04
CCDC88B-207ENST00000479965 WRNQ14191 1432 aaPredicted RBP eCLIP27.76■■■□□ 2.03
CCDC88B-207ENST00000479965 MROH2BQ7Z745 1585 aa27.75■■■□□ 2.03
CCDC88B-207ENST00000479965 WIZO95785 1651 aa27.63■■■□□ 2.01
CCDC88B-207ENST00000479965 SUPT16HQ9Y5B9 1047 aaKnown RBP27.62■■■□□ 2.01
CCDC88B-207ENST00000479965 CCDC88BA6NC98 1476 aa27.59■■■□□ 2.01
CCDC88B-207ENST00000479965 ABCC8Q09428 1581 aa27.56■■■□□ 2
CCDC88B-207ENST00000479965 SOGA1O94964 1423 aa27.55■■■□□ 2
CCDC88B-207ENST00000479965 TNIKQ9UKE5 1360 aa27.55■■■□□ 2
CCDC88B-207ENST00000479965 CSRNP3Q8WYN3 585 aa27.51■■□□□ 1.99
CCDC88B-207ENST00000479965 TSHZ2Q9NRE2 1034 aa27.45■■□□□ 1.99
CCDC88B-207ENST00000479965 ANP32EQ9BTT0 268 aa27.45■■□□□ 1.98
CCDC88B-207ENST00000479965 RANGAP1P46060 587 aaPredicted RBP27.39■■□□□ 1.98
CCDC88B-207ENST00000479965 RUSC2Q8N2Y8 1516 aa27.37■■□□□ 1.97
CCDC88B-207ENST00000479965 APLP2Q06481 763 aa27.36■■□□□ 1.97
CCDC88B-207ENST00000479965 CLSPNQ9HAW4 1339 aa27.35■■□□□ 1.97
CCDC88B-207ENST00000479965 BCL11AQ9H165 835 aa27.34■■□□□ 1.97
CCDC88B-207ENST00000479965 EIF4G1Q04637 1599 aaKnown RBP27.31■■□□□ 1.96
CCDC88B-207ENST00000479965 BCANQ96GW7 911 aa27.31■■□□□ 1.96
CCDC88B-207ENST00000479965 BAZ1AQ9NRL2 1556 aaPredicted RBP27.29■■□□□ 1.96
CCDC88B-207ENST00000479965 GOLGA3Q08378 1498 aa27.23■■□□□ 1.95
CCDC88B-207ENST00000479965 EEA1Q15075 1411 aa27.16■■□□□ 1.94
CCDC88B-207ENST00000479965 CLIP1P30622 1438 aa27.11■■□□□ 1.93
CCDC88B-207ENST00000479965 KCNH8Q96L42 1107 aa27.11■■□□□ 1.93
CCDC88B-207ENST00000479965 FKBP8Q14318 412 aa27.05■■□□□ 1.92
CCDC88B-207ENST00000479965 DHX57Q6P158 1386 aaKnown RBP27.01■■□□□ 1.91
CCDC88B-207ENST00000479965 NACADO15069 1562 aa27■■□□□ 1.91
CCDC88B-207ENST00000479965 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
CCDC88B-207ENST00000479965 VPS8Q8N3P4 1428 aa26.98■■□□□ 1.91
CCDC88B-207ENST00000479965 SMARCA2P51531 1590 aa26.95■■□□□ 1.9
CCDC88B-207ENST00000479965 CEP164Q9UPV0 1460 aa26.93■■□□□ 1.9
CCDC88B-207ENST00000479965 ITGAEP38570 1179 aa26.89■■□□□ 1.89
CCDC88B-207ENST00000479965 RBM19Q9Y4C8 960 aaKnown RBP26.87■■□□□ 1.89
CCDC88B-207ENST00000479965 NEFLP07196 543 aa26.84■■□□□ 1.89
CCDC88B-207ENST00000479965 DDX10Q13206 875 aaKnown RBP26.78■■□□□ 1.88
CCDC88B-207ENST00000479965 KANK4Q5T7N3 995 aaPredicted RBP26.76■■□□□ 1.87
CCDC88B-207ENST00000479965 RAPGEF2Q9Y4G8 1499 aa26.75■■□□□ 1.87
CCDC88B-207ENST00000479965 TRIM52Q96A61 297 aa26.73■■□□□ 1.87
CCDC88B-207ENST00000479965 SMARCA4P51532 1647 aa26.71■■□□□ 1.87
CCDC88B-207ENST00000479965 KIF21BO75037 1637 aa26.69■■□□□ 1.86
CCDC88B-207ENST00000479965 HIRIP3Q9BW71 556 aaPredicted RBP26.61■■□□□ 1.85
CCDC88B-207ENST00000479965 SYNJ1O43426 1573 aa26.59■■□□□ 1.85
CCDC88B-207ENST00000479965 ERICH6Q7L0X2 663 aa26.57■■□□□ 1.84
CCDC88B-207ENST00000479965 BAZ1BQ9UIG0 1483 aaKnown RBP26.57■■□□□ 1.84
CCDC88B-207ENST00000479965 MSH5O43196 834 aa26.56■■□□□ 1.84
CCDC88B-207ENST00000479965 SIN3AQ96ST3 1273 aa26.49■■□□□ 1.83
CCDC88B-207ENST00000479965 CCNB3Q8WWL7 1395 aa26.46■■□□□ 1.83
CCDC88B-207ENST00000479965 ANP32CO43423 234 aa26.45■■□□□ 1.83
CCDC88B-207ENST00000479965 IRX6P78412 446 aaPredicted RBP26.45■■□□□ 1.83
CCDC88B-207ENST00000479965 RAB3GAP2Q9H2M9 1393 aa26.43■■□□□ 1.82
CCDC88B-207ENST00000479965 PABPN1Q86U42 306 aaKnown RBP eCLIP26.43■■□□□ 1.82
CCDC88B-207ENST00000479965 RRBP1Q9P2E9 1410 aaKnown RBP26.4■■□□□ 1.82
CCDC88B-207ENST00000479965 ARAP1Q96P48 1450 aa26.39■■□□□ 1.81
CCDC88B-207ENST00000479965 PPP1R15AO75807 674 aaPredicted RBP26.37■■□□□ 1.81
CCDC88B-207ENST00000479965 CDK11AQ9UQ88 783 aaPredicted RBP26.37■■□□□ 1.81
CCDC88B-207ENST00000479965 WDR97A6NE52 1622 aa26.3■■□□□ 1.8
CCDC88B-207ENST00000479965 CCER2I3L3R5 266 aa26.3■■□□□ 1.8
CCDC88B-207ENST00000479965 FAM50AQ14320 339 aaKnown RBP26.28■■□□□ 1.8
CCDC88B-207ENST00000479965 MAPKBP1O60336 1514 aa26.28■■□□□ 1.8
CCDC88B-207ENST00000479965 CUX2O14529 1486 aa26.26■■□□□ 1.79
CCDC88B-207ENST00000479965 HNRNPUQ00839 825 aaKnown RBP eCLIP26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms