RNA–Protein interactions for RNA: ENST00000478997.3

RN7SL549P-201, Transcript of RNA, 7SL, cytoplasmic 549, pseudogene, humanhuman

BASIC

Gene RN7SL549P, Length 282 nt, Biotype misc RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RN7SL549P-201ENST00000478997 NISCHQ9Y2I1 1504 aa18.94■□□□□ 0.62
RN7SL549P-201ENST00000478997 CCDC180Q9P1Z9 1646 aa16.94■□□□□ 0.3
RN7SL549P-201ENST00000478997 ABCC9O60706 1549 aa16.6■□□□□ 0.25
RN7SL549P-201ENST00000478997 RB1CC1Q8TDY2 1594 aa15.97■□□□□ 0.15
RN7SL549P-201ENST00000478997 NACADO15069 1562 aa15.94■□□□□ 0.14
RN7SL549P-201ENST00000478997 MYO15BQ96JP2 1530 aa15.86■□□□□ 0.13
RN7SL549P-201ENST00000478997 ZCCHC6Q5VYS8 1495 aaKnown RBP15.77■□□□□ 0.11
RN7SL549P-201ENST00000478997 DCAF1Q9Y4B6 1507 aa15.73■□□□□ 0.11
RN7SL549P-201ENST00000478997 DCAF8L2P0C7V8 631 aa15.7■□□□□ 0.1
RN7SL549P-201ENST00000478997 UNC13AQ9UPW8 1703 aa15.6■□□□□ 0.09
RN7SL549P-201ENST00000478997 BICRAQ9NZM4 1560 aa15.5■□□□□ 0.07
RN7SL549P-201ENST00000478997 PABPN1Q86U42 306 aaKnown RBP eCLIP15.44■□□□□ 0.06
RN7SL549P-201ENST00000478997 SHROOM4Q9ULL8 1493 aa15.4■□□□□ 0.06
RN7SL549P-201ENST00000478997 SCRIBQ14160 1630 aa15.35■□□□□ 0.05
RN7SL549P-201ENST00000478997 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
RN7SL549P-201ENST00000478997 EIF4G1Q04637 1599 aaKnown RBP15.1■□□□□ 0.01
RN7SL549P-201ENST00000478997 CC2D2AQ9P2K1 1620 aa15.04■□□□□ -0
RN7SL549P-201ENST00000478997 CECR2Q9BXF3 1484 aa14.95□□□□□ -0.02
RN7SL549P-201ENST00000478997 SMARCA4P51532 1647 aa14.73□□□□□ -0.05
RN7SL549P-201ENST00000478997 NCAPD3P42695 1498 aa14.7□□□□□ -0.06
RN7SL549P-201ENST00000478997 BAZ1AQ9NRL2 1556 aaPredicted RBP14.69□□□□□ -0.06
RN7SL549P-201ENST00000478997 ATAD2BQ9ULI0 1458 aa14.67□□□□□ -0.06
RN7SL549P-201ENST00000478997 SMARCA2P51531 1590 aa14.67□□□□□ -0.06
RN7SL549P-201ENST00000478997 HMGXB3Q12766 1538 aa14.64□□□□□ -0.07
RN7SL549P-201ENST00000478997 PEG3Q9GZU2 1588 aa14.63□□□□□ -0.07
RN7SL549P-201ENST00000478997 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
RN7SL549P-201ENST00000478997 BAZ1BQ9UIG0 1483 aaKnown RBP14.53□□□□□ -0.08
RN7SL549P-201ENST00000478997 WIZO95785 1651 aa14.39□□□□□ -0.11
RN7SL549P-201ENST00000478997 RSF1Q96T23 1441 aaPredicted RBP14.36□□□□□ -0.11
RN7SL549P-201ENST00000478997 LAMC3Q9Y6N6 1575 aa14.34□□□□□ -0.11
RN7SL549P-201ENST00000478997 NESP48681 1621 aa14.33□□□□□ -0.12
RN7SL549P-201ENST00000478997 ERCC6Q03468 1493 aa14.32□□□□□ -0.12
RN7SL549P-201ENST00000478997 CUX2O14529 1486 aa14.29□□□□□ -0.12
RN7SL549P-201ENST00000478997 TOP2AP11388 1531 aaKnown RBP14.27□□□□□ -0.12
RN7SL549P-201ENST00000478997 CADPSQ9ULU8 1353 aa14.23□□□□□ -0.13
RN7SL549P-201ENST00000478997 PDS5BQ9NTI5 1447 aa14.22□□□□□ -0.13
RN7SL549P-201ENST00000478997 THOC2Q8NI27 1593 aaKnown RBP14.21□□□□□ -0.14
RN7SL549P-201ENST00000478997 KIF21AQ7Z4S6 1674 aa14.19□□□□□ -0.14
RN7SL549P-201ENST00000478997 CFTRP13569 1480 aa14.15□□□□□ -0.14
RN7SL549P-201ENST00000478997 MRC2Q9UBG0 1479 aa14.09□□□□□ -0.15
RN7SL549P-201ENST00000478997 FANCD2Q9BXW9 1451 aa14.07□□□□□ -0.16
RN7SL549P-201ENST00000478997 CEP164Q9UPV0 1460 aa14.07□□□□□ -0.16
RN7SL549P-201ENST00000478997 WDR62O43379 1518 aa14.07□□□□□ -0.16
RN7SL549P-201ENST00000478997 CCDC88BA6NC98 1476 aa14.06□□□□□ -0.16
RN7SL549P-201ENST00000478997 PRDM2Q13029 1718 aa14.05□□□□□ -0.16
RN7SL549P-201ENST00000478997 DNAJC5Q9H3Z4 198 aa13.95□□□□□ -0.18
RN7SL549P-201ENST00000478997 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
RN7SL549P-201ENST00000478997 ABCC8Q09428 1581 aa13.86□□□□□ -0.19
RN7SL549P-201ENST00000478997 TOPBP1Q92547 1522 aa13.84□□□□□ -0.19
RN7SL549P-201ENST00000478997 DNMBPQ6XZF7 1577 aa13.83□□□□□ -0.2
RN7SL549P-201ENST00000478997 IFT140Q96RY7 1462 aa13.8□□□□□ -0.2
RN7SL549P-201ENST00000478997 SUPT5HO00267 1087 aaKnown RBP13.76□□□□□ -0.21
RN7SL549P-201ENST00000478997 POLA1P09884 1462 aaPredicted RBP13.72□□□□□ -0.21
RN7SL549P-201ENST00000478997 TARBP1Q13395 1621 aaKnown RBP13.72□□□□□ -0.21
RN7SL549P-201ENST00000478997 ZNF608Q9ULD9 1512 aaPredicted RBP13.71□□□□□ -0.21
RN7SL549P-201ENST00000478997 EIF4G3O43432 1585 aaKnown RBP13.68□□□□□ -0.22
RN7SL549P-201ENST00000478997 CUX1P39880 1505 aa13.68□□□□□ -0.22
RN7SL549P-201ENST00000478997 WDR97A6NE52 1622 aa13.65□□□□□ -0.22
RN7SL549P-201ENST00000478997 FGD5Q6ZNL6 1462 aa13.65□□□□□ -0.22
RN7SL549P-201ENST00000478997 SOGA1O94964 1423 aa13.62□□□□□ -0.23
RN7SL549P-201ENST00000478997 RAD54L2Q9Y4B4 1467 aa13.61□□□□□ -0.23
RN7SL549P-201ENST00000478997 OSCARQ8IYS5 282 aa13.6□□□□□ -0.23
RN7SL549P-201ENST00000478997 AQRO60306 1485 aaKnown RBP eCLIP13.6□□□□□ -0.23
RN7SL549P-201ENST00000478997 BIVM-ERCC5R4GMW8 1640 aa13.56□□□□□ -0.24
RN7SL549P-201ENST00000478997 TOP2BQ02880 1626 aa13.55□□□□□ -0.24
RN7SL549P-201ENST00000478997 TDRD9Q8NDG6 1382 aaKnown RBP13.54□□□□□ -0.24
RN7SL549P-201ENST00000478997 WRNQ14191 1432 aaPredicted RBP eCLIP13.54□□□□□ -0.24
RN7SL549P-201ENST00000478997 ABCA10Q8WWZ4 1543 aa13.54□□□□□ -0.24
RN7SL549P-201ENST00000478997 CHD1O14646 1710 aa13.52□□□□□ -0.25
RN7SL549P-201ENST00000478997 SYNJ1O43426 1573 aa13.51□□□□□ -0.25
RN7SL549P-201ENST00000478997 GRIN2BQ13224 1484 aa13.51□□□□□ -0.25
RN7SL549P-201ENST00000478997 MAGI1Q96QZ7 1491 aaPredicted RBP13.51□□□□□ -0.25
RN7SL549P-201ENST00000478997 ABCA5Q8WWZ7 1642 aa13.5□□□□□ -0.25
RN7SL549P-201ENST00000478997 SNAPC4Q5SXM2 1469 aa13.49□□□□□ -0.25
RN7SL549P-201ENST00000478997 PBRM1Q86U86 1689 aa13.48□□□□□ -0.25
RN7SL549P-201ENST00000478997 GAPVD1Q14C86 1478 aa13.48□□□□□ -0.25
RN7SL549P-201ENST00000478997 SYNJ2O15056 1496 aa13.45□□□□□ -0.26
RN7SL549P-201ENST00000478997 RIMBP3CA6NJZ7 1639 aa13.43□□□□□ -0.26
RN7SL549P-201ENST00000478997 RIMBP3BA6NNM3 1639 aa13.43□□□□□ -0.26
RN7SL549P-201ENST00000478997 RIMBP3Q9UFD9 1639 aa13.43□□□□□ -0.26
RN7SL549P-201ENST00000478997 ARHGEF11O15085 1522 aa13.42□□□□□ -0.26
RN7SL549P-201ENST00000478997 CLASP1Q7Z460 1538 aa13.41□□□□□ -0.26
RN7SL549P-201ENST00000478997 FBLN2P98095 1184 aa13.39□□□□□ -0.27
RN7SL549P-201ENST00000478997 ADAMTS12P58397 1594 aa13.38□□□□□ -0.27
RN7SL549P-201ENST00000478997 CHMP7Q8WUX9 453 aaPredicted RBP13.38□□□□□ -0.27
RN7SL549P-201ENST00000478997 ERICH3Q5RHP9 1530 aa13.38□□□□□ -0.27
RN7SL549P-201ENST00000478997 TRIM41Q8WV44 630 aa13.35□□□□□ -0.27
RN7SL549P-201ENST00000478997 GRIN2AQ12879 1464 aa13.35□□□□□ -0.27
RN7SL549P-201ENST00000478997 FHAD1B1AJZ9 1412 aa13.33□□□□□ -0.28
RN7SL549P-201ENST00000478997 NUP160Q12769 1436 aa13.3□□□□□ -0.28
RN7SL549P-201ENST00000478997 ARAP1Q96P48 1450 aa13.3□□□□□ -0.28
RN7SL549P-201ENST00000478997 CEP170Q5SW79 1584 aa13.28□□□□□ -0.28
RN7SL549P-201ENST00000478997 KIF27Q86VH2 1401 aa13.27□□□□□ -0.29
RN7SL549P-201ENST00000478997 SHROOM2Q13796 1616 aa13.24□□□□□ -0.29
RN7SL549P-201ENST00000478997 CUL7Q14999 1698 aa13.23□□□□□ -0.29
RN7SL549P-201ENST00000478997 CYB5RLQ6IPT4 315 aa13.22□□□□□ -0.29
RN7SL549P-201ENST00000478997 IGF1RP08069 1367 aa13.21□□□□□ -0.29
RN7SL549P-201ENST00000478997 RUSC2Q8N2Y8 1516 aa13.19□□□□□ -0.3
RN7SL549P-201ENST00000478997 ERCC6L2Q5T890 1561 aa13.16□□□□□ -0.3
RN7SL549P-201ENST00000478997 KIAA0586Q9BVV6 1533 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms