RNA–Protein interactions for RNA: ENST00000478843.5

PRKCD-205, Transcript of protein kinase C delta, humanhuman

TSL 4

Gene PRKCD, Length 589 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCD-205ENST00000478843 NISCHQ9Y2I1 1504 aa24.61■■□□□ 1.53
PRKCD-205ENST00000478843 ABCC9O60706 1549 aa22.39■■□□□ 1.17
PRKCD-205ENST00000478843 CCDC180Q9P1Z9 1646 aa22.31■■□□□ 1.16
PRKCD-205ENST00000478843 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
PRKCD-205ENST00000478843 DNAJC5BQ9UF47 199 aa21.15■□□□□ 0.98
PRKCD-205ENST00000478843 NACADO15069 1562 aa21.06■□□□□ 0.96
PRKCD-205ENST00000478843 UNC13AQ9UPW8 1703 aa20.9■□□□□ 0.94
PRKCD-205ENST00000478843 MYO15BQ96JP2 1530 aa20.71■□□□□ 0.91
PRKCD-205ENST00000478843 PABPN1Q86U42 306 aaKnown RBP eCLIP20.7■□□□□ 0.9
PRKCD-205ENST00000478843 BICRAQ9NZM4 1560 aa20.7■□□□□ 0.9
PRKCD-205ENST00000478843 DCAF8L2P0C7V8 631 aa20.61■□□□□ 0.89
PRKCD-205ENST00000478843 SHROOM4Q9ULL8 1493 aa20.4■□□□□ 0.86
PRKCD-205ENST00000478843 ZCCHC6Q5VYS8 1495 aaKnown RBP20.39■□□□□ 0.85
PRKCD-205ENST00000478843 DCAF1Q9Y4B6 1507 aa20.36■□□□□ 0.85
PRKCD-205ENST00000478843 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
PRKCD-205ENST00000478843 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
PRKCD-205ENST00000478843 CECR2Q9BXF3 1484 aa20.2■□□□□ 0.82
PRKCD-205ENST00000478843 EIF4G1Q04637 1599 aaKnown RBP20.18■□□□□ 0.82
PRKCD-205ENST00000478843 DNAJC5Q9H3Z4 198 aa19.58■□□□□ 0.72
PRKCD-205ENST00000478843 CUX2O14529 1486 aa19.44■□□□□ 0.7
PRKCD-205ENST00000478843 NCAPD3P42695 1498 aa19.4■□□□□ 0.7
PRKCD-205ENST00000478843 ERCC6Q03468 1493 aa19.33■□□□□ 0.68
PRKCD-205ENST00000478843 ATAD2BQ9ULI0 1458 aa19.32■□□□□ 0.68
PRKCD-205ENST00000478843 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
PRKCD-205ENST00000478843 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
PRKCD-205ENST00000478843 SMARCA2P51531 1590 aa19.27■□□□□ 0.68
PRKCD-205ENST00000478843 NESP48681 1621 aa19.18■□□□□ 0.66
PRKCD-205ENST00000478843 THOC2Q8NI27 1593 aaKnown RBP19.15■□□□□ 0.66
PRKCD-205ENST00000478843 PEG3Q9GZU2 1588 aa19.14■□□□□ 0.65
PRKCD-205ENST00000478843 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
PRKCD-205ENST00000478843 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
PRKCD-205ENST00000478843 LAMC3Q9Y6N6 1575 aa19.05■□□□□ 0.64
PRKCD-205ENST00000478843 KIF21AQ7Z4S6 1674 aa19.03■□□□□ 0.64
PRKCD-205ENST00000478843 MROH2BQ7Z745 1585 aa18.97■□□□□ 0.63
PRKCD-205ENST00000478843 PDS5BQ9NTI5 1447 aa18.85■□□□□ 0.61
PRKCD-205ENST00000478843 WDR62O43379 1518 aa18.79■□□□□ 0.6
PRKCD-205ENST00000478843 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.6
PRKCD-205ENST00000478843 CADPSQ9ULU8 1353 aa18.75■□□□□ 0.59
PRKCD-205ENST00000478843 WIZO95785 1651 aa18.75■□□□□ 0.59
PRKCD-205ENST00000478843 CEP164Q9UPV0 1460 aa18.65■□□□□ 0.58
PRKCD-205ENST00000478843 FANCD2Q9BXW9 1451 aa18.58■□□□□ 0.57
PRKCD-205ENST00000478843 TRIM41Q8WV44 630 aa18.57■□□□□ 0.56
PRKCD-205ENST00000478843 CFTRP13569 1480 aa18.54■□□□□ 0.56
PRKCD-205ENST00000478843 TOP2AP11388 1531 aaKnown RBP18.51■□□□□ 0.55
PRKCD-205ENST00000478843 PRDM2Q13029 1718 aa18.5■□□□□ 0.55
PRKCD-205ENST00000478843 URB2Q14146 1524 aaKnown RBP18.49■□□□□ 0.55
PRKCD-205ENST00000478843 RSF1Q96T23 1441 aaPredicted RBP18.43■□□□□ 0.54
PRKCD-205ENST00000478843 OSCARQ8IYS5 282 aa18.34■□□□□ 0.53
PRKCD-205ENST00000478843 RIMBP3CA6NJZ7 1639 aa18.34■□□□□ 0.53
PRKCD-205ENST00000478843 RIMBP3BA6NNM3 1639 aa18.34■□□□□ 0.53
PRKCD-205ENST00000478843 RIMBP3Q9UFD9 1639 aa18.34■□□□□ 0.53
PRKCD-205ENST00000478843 ZNF608Q9ULD9 1512 aaPredicted RBP18.28■□□□□ 0.52
PRKCD-205ENST00000478843 IFT140Q96RY7 1462 aa18.26■□□□□ 0.51
PRKCD-205ENST00000478843 EIF4G3O43432 1585 aaKnown RBP18.25■□□□□ 0.51
PRKCD-205ENST00000478843 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
PRKCD-205ENST00000478843 CCDC88BA6NC98 1476 aa18.22■□□□□ 0.51
PRKCD-205ENST00000478843 ARHGEF11O15085 1522 aa18.22■□□□□ 0.51
PRKCD-205ENST00000478843 DNMBPQ6XZF7 1577 aa18.18■□□□□ 0.5
PRKCD-205ENST00000478843 CHD1O14646 1710 aa18.17■□□□□ 0.5
PRKCD-205ENST00000478843 TARBP1Q13395 1621 aaKnown RBP18.15■□□□□ 0.5
PRKCD-205ENST00000478843 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
PRKCD-205ENST00000478843 POLA1P09884 1462 aaPredicted RBP18.03■□□□□ 0.48
PRKCD-205ENST00000478843 ARAP1Q96P48 1450 aa18.03■□□□□ 0.48
PRKCD-205ENST00000478843 AQRO60306 1485 aaKnown RBP eCLIP18.02■□□□□ 0.483e-6■■■■□ 24.7
PRKCD-205ENST00000478843 WDR97A6NE52 1622 aa17.95■□□□□ 0.46
PRKCD-205ENST00000478843 CLASP1Q7Z460 1538 aa17.93■□□□□ 0.46
PRKCD-205ENST00000478843 RAD54L2Q9Y4B4 1467 aa17.93■□□□□ 0.46
PRKCD-205ENST00000478843 CYB5RLQ6IPT4 315 aa17.92■□□□□ 0.46
PRKCD-205ENST00000478843 SNAPC4Q5SXM2 1469 aa17.89■□□□□ 0.45
PRKCD-205ENST00000478843 FGD5Q6ZNL6 1462 aa17.88■□□□□ 0.45
PRKCD-205ENST00000478843 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
PRKCD-205ENST00000478843 SOGA1O94964 1423 aa17.85■□□□□ 0.45
PRKCD-205ENST00000478843 CUX1P39880 1505 aa17.84■□□□□ 0.45
PRKCD-205ENST00000478843 MAGI1Q96QZ7 1491 aaPredicted RBP17.84■□□□□ 0.45
PRKCD-205ENST00000478843 TDRD9Q8NDG6 1382 aaKnown RBP17.84■□□□□ 0.45
PRKCD-205ENST00000478843 FBLN2P98095 1184 aa17.83■□□□□ 0.44
PRKCD-205ENST00000478843 PBRM1Q86U86 1689 aa17.83■□□□□ 0.44
PRKCD-205ENST00000478843 GRIN2BQ13224 1484 aa17.78■□□□□ 0.44
PRKCD-205ENST00000478843 SYNJ2O15056 1496 aa17.77■□□□□ 0.44
PRKCD-205ENST00000478843 TRHP20396 242 aaPredicted RBP17.77■□□□□ 0.44
PRKCD-205ENST00000478843 ABCA5Q8WWZ7 1642 aa17.75■□□□□ 0.43
PRKCD-205ENST00000478843 CHMP7Q8WUX9 453 aaPredicted RBP17.68■□□□□ 0.42
PRKCD-205ENST00000478843 GAPVD1Q14C86 1478 aa17.68■□□□□ 0.42
PRKCD-205ENST00000478843 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
PRKCD-205ENST00000478843 ADAMTS12P58397 1594 aa17.62■□□□□ 0.41
PRKCD-205ENST00000478843 ERCC6L2Q5T890 1561 aa17.61■□□□□ 0.41
PRKCD-205ENST00000478843 GRIN2AQ12879 1464 aa17.58■□□□□ 0.41
PRKCD-205ENST00000478843 CEP170Q5SW79 1584 aa17.57■□□□□ 0.4
PRKCD-205ENST00000478843 SHROOM2Q13796 1616 aa17.57■□□□□ 0.4
PRKCD-205ENST00000478843 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
PRKCD-205ENST00000478843 NUP160Q12769 1436 aa17.54■□□□□ 0.4
PRKCD-205ENST00000478843 TOP2BQ02880 1626 aa17.5■□□□□ 0.39
PRKCD-205ENST00000478843 KIF13AQ9H1H9 1805 aa17.48■□□□□ 0.39
PRKCD-205ENST00000478843 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
PRKCD-205ENST00000478843 ERICH3Q5RHP9 1530 aa17.45■□□□□ 0.38
PRKCD-205ENST00000478843 FHAD1B1AJZ9 1412 aa17.44■□□□□ 0.38
PRKCD-205ENST00000478843 AEBP2Q6ZN18 517 aaPredicted RBP17.42■□□□□ 0.38
PRKCD-205ENST00000478843 RUSC2Q8N2Y8 1516 aa17.39■□□□□ 0.37
PRKCD-205ENST00000478843 PRG4Q92954 1404 aaPredicted RBP17.32■□□□□ 0.36
PRKCD-205ENST00000478843 DIP2BQ9P265 1576 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms