RNA–Protein interactions for RNA: ENST00000477939.1

TRA2B-211, Transcript of transformer 2 beta homolog, humanhuman

TSL 2

Gene TRA2B, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-211ENST00000477939 NISCHQ9Y2I1 1504 aa14.01□□□□□ -0.17
TRA2B-211ENST00000477939 CCDC180Q9P1Z9 1646 aa12.61□□□□□ -0.39
TRA2B-211ENST00000477939 ABCC9O60706 1549 aa12.57□□□□□ -0.4
TRA2B-211ENST00000477939 RB1CC1Q8TDY2 1594 aa11.96□□□□□ -0.49
TRA2B-211ENST00000477939 NACADO15069 1562 aa11.88□□□□□ -0.51
TRA2B-211ENST00000477939 DNAJC5BQ9UF47 199 aa11.77□□□□□ -0.53
TRA2B-211ENST00000477939 UNC13AQ9UPW8 1703 aa11.76□□□□□ -0.53
TRA2B-211ENST00000477939 MYO15BQ96JP2 1530 aa11.73□□□□□ -0.53
TRA2B-211ENST00000477939 DCAF8L2P0C7V8 631 aa11.72□□□□□ -0.53
TRA2B-211ENST00000477939 PABPN1Q86U42 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
TRA2B-211ENST00000477939 BICRAQ9NZM4 1560 aa11.66□□□□□ -0.54
TRA2B-211ENST00000477939 ZCCHC6Q5VYS8 1495 aaKnown RBP11.64□□□□□ -0.55
TRA2B-211ENST00000477939 DCAF1Q9Y4B6 1507 aa11.59□□□□□ -0.55
TRA2B-211ENST00000477939 SHROOM4Q9ULL8 1493 aa11.48□□□□□ -0.57
TRA2B-211ENST00000477939 SCRIBQ14160 1630 aa11.48□□□□□ -0.57
TRA2B-211ENST00000477939 CC2D2AQ9P2K1 1620 aa11.38□□□□□ -0.59
TRA2B-211ENST00000477939 EIF4G1Q04637 1599 aaKnown RBP11.36□□□□□ -0.59
TRA2B-211ENST00000477939 CECR2Q9BXF3 1484 aa11.32□□□□□ -0.6
TRA2B-211ENST00000477939 NCAPD3P42695 1498 aa10.96□□□□□ -0.65
TRA2B-211ENST00000477939 SMARCA4P51532 1647 aa10.95□□□□□ -0.66
TRA2B-211ENST00000477939 ATAD2BQ9ULI0 1458 aa10.94□□□□□ -0.66
TRA2B-211ENST00000477939 HMGXB3Q12766 1538 aa10.92□□□□□ -0.66
TRA2B-211ENST00000477939 SMARCA2P51531 1590 aa10.91□□□□□ -0.66
TRA2B-211ENST00000477939 BAZ1AQ9NRL2 1556 aaPredicted RBP10.88□□□□□ -0.67
TRA2B-211ENST00000477939 PEG3Q9GZU2 1588 aa10.86□□□□□ -0.67
TRA2B-211ENST00000477939 CUX2O14529 1486 aa10.83□□□□□ -0.68
TRA2B-211ENST00000477939 ERCC6Q03468 1493 aa10.83□□□□□ -0.68
TRA2B-211ENST00000477939 BAZ1BQ9UIG0 1483 aaKnown RBP10.83□□□□□ -0.68
TRA2B-211ENST00000477939 MYT1Q01538 1121 aa10.82□□□□□ -0.68
TRA2B-211ENST00000477939 NESP48681 1621 aa10.81□□□□□ -0.68
TRA2B-211ENST00000477939 MROH2BQ7Z745 1585 aa10.81□□□□□ -0.68
TRA2B-211ENST00000477939 DNAJC5Q9H3Z4 198 aa10.77□□□□□ -0.69
TRA2B-211ENST00000477939 THOC2Q8NI27 1593 aaKnown RBP10.74□□□□□ -0.69
TRA2B-211ENST00000477939 LAMC3Q9Y6N6 1575 aa10.73□□□□□ -0.69
TRA2B-211ENST00000477939 KIF21AQ7Z4S6 1674 aa10.7□□□□□ -0.7
TRA2B-211ENST00000477939 WIZO95785 1651 aa10.69□□□□□ -0.7
TRA2B-211ENST00000477939 PELP1Q8IZL8 1130 aaKnown RBP10.68□□□□□ -0.7
TRA2B-211ENST00000477939 PDS5BQ9NTI5 1447 aa10.63□□□□□ -0.71
TRA2B-211ENST00000477939 CADPSQ9ULU8 1353 aa10.61□□□□□ -0.71
TRA2B-211ENST00000477939 WDR62O43379 1518 aa10.58□□□□□ -0.72
TRA2B-211ENST00000477939 TTBK1Q5TCY1 1321 aaPredicted RBP10.58□□□□□ -0.72
TRA2B-211ENST00000477939 MRC2Q9UBG0 1479 aa10.57□□□□□ -0.72
TRA2B-211ENST00000477939 RSF1Q96T23 1441 aaPredicted RBP10.57□□□□□ -0.72
TRA2B-211ENST00000477939 TOP2AP11388 1531 aaKnown RBP10.55□□□□□ -0.72
TRA2B-211ENST00000477939 CEP164Q9UPV0 1460 aa10.53□□□□□ -0.72
TRA2B-211ENST00000477939 CFTRP13569 1480 aa10.52□□□□□ -0.73
TRA2B-211ENST00000477939 FANCD2Q9BXW9 1451 aa10.52□□□□□ -0.73
TRA2B-211ENST00000477939 PRDM2Q13029 1718 aa10.47□□□□□ -0.73
TRA2B-211ENST00000477939 URB2Q14146 1524 aaKnown RBP10.45□□□□□ -0.74
TRA2B-211ENST00000477939 CCDC88BA6NC98 1476 aa10.4□□□□□ -0.74
TRA2B-211ENST00000477939 SLC24A1O60721 1099 aa10.36□□□□□ -0.75
TRA2B-211ENST00000477939 TOPBP1Q92547 1522 aa10.33□□□□□ -0.76
TRA2B-211ENST00000477939 ZNF608Q9ULD9 1512 aaPredicted RBP10.32□□□□□ -0.76
TRA2B-211ENST00000477939 IFT140Q96RY7 1462 aa10.31□□□□□ -0.76
TRA2B-211ENST00000477939 DNMBPQ6XZF7 1577 aa10.3□□□□□ -0.76
TRA2B-211ENST00000477939 TRIM41Q8WV44 630 aa10.29□□□□□ -0.76
TRA2B-211ENST00000477939 EIF4G3O43432 1585 aaKnown RBP10.28□□□□□ -0.76
TRA2B-211ENST00000477939 ABCC8Q09428 1581 aa10.26□□□□□ -0.77
TRA2B-211ENST00000477939 OSCARQ8IYS5 282 aa10.26□□□□□ -0.77
TRA2B-211ENST00000477939 TARBP1Q13395 1621 aaKnown RBP10.25□□□□□ -0.77
TRA2B-211ENST00000477939 POLA1P09884 1462 aaPredicted RBP10.23□□□□□ -0.77
TRA2B-211ENST00000477939 RIMBP3CA6NJZ7 1639 aa10.22□□□□□ -0.77
TRA2B-211ENST00000477939 RIMBP3BA6NNM3 1639 aa10.22□□□□□ -0.77
TRA2B-211ENST00000477939 RIMBP3Q9UFD9 1639 aa10.22□□□□□ -0.77
TRA2B-211ENST00000477939 CHD1O14646 1710 aa10.21□□□□□ -0.78
TRA2B-211ENST00000477939 ARHGEF11O15085 1522 aa10.19□□□□□ -0.78
TRA2B-211ENST00000477939 AQRO60306 1485 aaKnown RBP eCLIP10.19□□□□□ -0.782e-10■■■■□ 22.1
TRA2B-211ENST00000477939 RAD54L2Q9Y4B4 1467 aa10.17□□□□□ -0.78
TRA2B-211ENST00000477939 CUX1P39880 1505 aa10.16□□□□□ -0.78
TRA2B-211ENST00000477939 FGD5Q6ZNL6 1462 aa10.16□□□□□ -0.78
TRA2B-211ENST00000477939 WDR97A6NE52 1622 aa10.14□□□□□ -0.79
TRA2B-211ENST00000477939 SOGA1O94964 1423 aa10.13□□□□□ -0.79
TRA2B-211ENST00000477939 TDRD9Q8NDG6 1382 aaKnown RBP10.12□□□□□ -0.79
TRA2B-211ENST00000477939 SNAPC4Q5SXM2 1469 aa10.11□□□□□ -0.79
TRA2B-211ENST00000477939 ARAP1Q96P48 1450 aa10.09□□□□□ -0.79
TRA2B-211ENST00000477939 CLASP1Q7Z460 1538 aa10.08□□□□□ -0.8
TRA2B-211ENST00000477939 MAGI1Q96QZ7 1491 aaPredicted RBP10.08□□□□□ -0.8
TRA2B-211ENST00000477939 PBRM1Q86U86 1689 aa10.08□□□□□ -0.8
TRA2B-211ENST00000477939 FBLN2P98095 1184 aa10.07□□□□□ -0.8
TRA2B-211ENST00000477939 ABCA5Q8WWZ7 1642 aa10.07□□□□□ -0.8
TRA2B-211ENST00000477939 GRIN2BQ13224 1484 aa10.06□□□□□ -0.8
TRA2B-211ENST00000477939 SYNJ1O43426 1573 aa10.05□□□□□ -0.8
TRA2B-211ENST00000477939 SYNJ2O15056 1496 aa10.04□□□□□ -0.8
TRA2B-211ENST00000477939 ABCA10Q8WWZ4 1543 aa10.04□□□□□ -0.8
TRA2B-211ENST00000477939 CYB5RLQ6IPT4 315 aa10.04□□□□□ -0.8
TRA2B-211ENST00000477939 SUPT5HO00267 1087 aaKnown RBP10.03□□□□□ -0.8
TRA2B-211ENST00000477939 ERICH6Q7L0X2 663 aa10.03□□□□□ -0.8
TRA2B-211ENST00000477939 GAPVD1Q14C86 1478 aa10.03□□□□□ -0.8
TRA2B-211ENST00000477939 BIVM-ERCC5R4GMW8 1640 aa10.01□□□□□ -0.81
TRA2B-211ENST00000477939 CHMP7Q8WUX9 453 aaPredicted RBP10□□□□□ -0.81
TRA2B-211ENST00000477939 TOP2BQ02880 1626 aa10□□□□□ -0.81
TRA2B-211ENST00000477939 ADAMTS12P58397 1594 aa9.98□□□□□ -0.81
TRA2B-211ENST00000477939 WRNQ14191 1432 aaPredicted RBP eCLIP9.97□□□□□ -0.81
TRA2B-211ENST00000477939 GRIN2AQ12879 1464 aa9.96□□□□□ -0.82
TRA2B-211ENST00000477939 CEP170Q5SW79 1584 aa9.95□□□□□ -0.82
TRA2B-211ENST00000477939 ERCC6L2Q5T890 1561 aa9.92□□□□□ -0.82
TRA2B-211ENST00000477939 NUP160Q12769 1436 aa9.92□□□□□ -0.82
TRA2B-211ENST00000477939 ERICH3Q5RHP9 1530 aa9.92□□□□□ -0.82
TRA2B-211ENST00000477939 SHROOM2Q13796 1616 aa9.91□□□□□ -0.82
TRA2B-211ENST00000477939 TRHP20396 242 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms