RNA–Protein interactions for RNA: ENST00000477893.1

ERCC8-205, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

TSL 2

Gene ERCC8, Length 752 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-205ENST00000477893 AEBP2Q6ZN18 517 aaPredicted RBP24.81■■□□□ 1.56
ERCC8-205ENST00000477893 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
ERCC8-205ENST00000477893 SENP3Q9H4L4 574 aaPredicted RBP21.19■□□□□ 0.98
ERCC8-205ENST00000477893 PHF23Q9BUL5 403 aaPredicted RBP20.89■□□□□ 0.93
ERCC8-205ENST00000477893 NISCHQ9Y2I1 1504 aa20.3■□□□□ 0.84
ERCC8-205ENST00000477893 FOXD1Q16676 465 aa19.86■□□□□ 0.77
ERCC8-205ENST00000477893 POTEDQ86YR6 584 aa19.28■□□□□ 0.68
ERCC8-205ENST00000477893 MSH5O43196 834 aa18.74■□□□□ 0.59
ERCC8-205ENST00000477893 PIAS4Q8N2W9 510 aaPredicted RBP18.44■□□□□ 0.54
ERCC8-205ENST00000477893 PPP6R1Q9UPN7 881 aa18.19■□□□□ 0.5
ERCC8-205ENST00000477893 ADRA2BP18089 450 aa18.11■□□□□ 0.49
ERCC8-205ENST00000477893 PLPPR3Q6T4P5 718 aa18.1■□□□□ 0.49
ERCC8-205ENST00000477893 CCDC180Q9P1Z9 1646 aa18.09■□□□□ 0.49
ERCC8-205ENST00000477893 ABCC9O60706 1549 aa17.98■□□□□ 0.47
ERCC8-205ENST00000477893 DCAF8L2P0C7V8 631 aa17.17■□□□□ 0.34
ERCC8-205ENST00000477893 RB1CC1Q8TDY2 1594 aa17.14■□□□□ 0.33
ERCC8-205ENST00000477893 NACADO15069 1562 aa17.04■□□□□ 0.32
ERCC8-205ENST00000477893 ZCCHC6Q5VYS8 1495 aaKnown RBP16.88■□□□□ 0.29
ERCC8-205ENST00000477893 MAPK8IP2Q13387 824 aaPredicted RBP16.82■□□□□ 0.28
ERCC8-205ENST00000477893 MYO15BQ96JP2 1530 aa16.81■□□□□ 0.28
ERCC8-205ENST00000477893 PABPN1Q86U42 306 aaKnown RBP eCLIP16.79■□□□□ 0.28
ERCC8-205ENST00000477893 UNC13AQ9UPW8 1703 aa16.75■□□□□ 0.27
ERCC8-205ENST00000477893 DCAF1Q9Y4B6 1507 aa16.71■□□□□ 0.27
ERCC8-205ENST00000477893 DMRT2Q9Y5R5 561 aa16.71■□□□□ 0.27
ERCC8-205ENST00000477893 SCRIBQ14160 1630 aa16.63■□□□□ 0.25
ERCC8-205ENST00000477893 BICRAQ9NZM4 1560 aa16.62■□□□□ 0.25
ERCC8-205ENST00000477893 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
ERCC8-205ENST00000477893 CACNB1Q02641 598 aaPredicted RBP16.5■□□□□ 0.23
ERCC8-205ENST00000477893 SCAF1Q9H7N4 1312 aaKnown RBP16.49■□□□□ 0.23
ERCC8-205ENST00000477893 SHROOM4Q9ULL8 1493 aa16.35■□□□□ 0.21
ERCC8-205ENST00000477893 EIF4G1Q04637 1599 aaKnown RBP16.21■□□□□ 0.19
ERCC8-205ENST00000477893 CC2D2AQ9P2K1 1620 aa16.2■□□□□ 0.18
ERCC8-205ENST00000477893 DCAF8L1A6NGE4 600 aa16.18■□□□□ 0.18
ERCC8-205ENST00000477893 CECR2Q9BXF3 1484 aa16.14■□□□□ 0.17
ERCC8-205ENST00000477893 RNF39Q9H2S5 420 aa15.96■□□□□ 0.15
ERCC8-205ENST00000477893 HOXD11P31277 338 aaPredicted RBP15.88■□□□□ 0.13
ERCC8-205ENST00000477893 PPP4R3CPQ6ZMV5 832 aa15.84■□□□□ 0.13
ERCC8-205ENST00000477893 SMARCA4P51532 1647 aa15.81■□□□□ 0.12
ERCC8-205ENST00000477893 ATAD2BQ9ULI0 1458 aa15.75■□□□□ 0.11
ERCC8-205ENST00000477893 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
ERCC8-205ENST00000477893 NCAPD3P42695 1498 aa15.71■□□□□ 0.11
ERCC8-205ENST00000477893 SMARCA2P51531 1590 aa15.7■□□□□ 0.1
ERCC8-205ENST00000477893 MROH2BQ7Z745 1585 aa15.68■□□□□ 0.1
ERCC8-205ENST00000477893 C1QBPQ07021 282 aaKnown RBP15.67■□□□□ 0.1
ERCC8-205ENST00000477893 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
ERCC8-205ENST00000477893 HMGXB3Q12766 1538 aa15.64■□□□□ 0.09
ERCC8-205ENST00000477893 CNKSR2Q8WXI2 1034 aa15.63■□□□□ 0.09
ERCC8-205ENST00000477893 RNF216Q9NWF9 866 aaPredicted RBP15.62■□□□□ 0.09
ERCC8-205ENST00000477893 PEG3Q9GZU2 1588 aa15.58■□□□□ 0.09
ERCC8-205ENST00000477893 WIZO95785 1651 aa15.52■□□□□ 0.08
ERCC8-205ENST00000477893 ERCC6Q03468 1493 aa15.51■□□□□ 0.07
ERCC8-205ENST00000477893 NESP48681 1621 aa15.5■□□□□ 0.07
ERCC8-205ENST00000477893 RSF1Q96T23 1441 aaPredicted RBP15.43■□□□□ 0.06
ERCC8-205ENST00000477893 LAMC3Q9Y6N6 1575 aa15.35■□□□□ 0.05
ERCC8-205ENST00000477893 TOP2AP11388 1531 aaKnown RBP15.32■□□□□ 0.04
ERCC8-205ENST00000477893 CUX2O14529 1486 aa15.31■□□□□ 0.04
ERCC8-205ENST00000477893 KIF21AQ7Z4S6 1674 aa15.29■□□□□ 0.04
ERCC8-205ENST00000477893 CADPSQ9ULU8 1353 aa15.28■□□□□ 0.04
ERCC8-205ENST00000477893 PDS5BQ9NTI5 1447 aa15.26■□□□□ 0.03
ERCC8-205ENST00000477893 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
ERCC8-205ENST00000477893 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.2■□□□□ 0.02
ERCC8-205ENST00000477893 CFTRP13569 1480 aa15.15■□□□□ 0.02
ERCC8-205ENST00000477893 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
ERCC8-205ENST00000477893 MRC2Q9UBG0 1479 aa15.15■□□□□ 0.02
ERCC8-205ENST00000477893 CEP164Q9UPV0 1460 aa15.15■□□□□ 0.02
ERCC8-205ENST00000477893 CCDC88BA6NC98 1476 aa15.14■□□□□ 0.01
ERCC8-205ENST00000477893 WDR62O43379 1518 aa15.09■□□□□ 0.01
ERCC8-205ENST00000477893 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
ERCC8-205ENST00000477893 DNAJC5Q9H3Z4 198 aa15.03■□□□□ -0
ERCC8-205ENST00000477893 SUPT5HO00267 1087 aaKnown RBP15.02■□□□□ -0
ERCC8-205ENST00000477893 PRDM2Q13029 1718 aa15.02□□□□□ -0.01
ERCC8-205ENST00000477893 URB2Q14146 1524 aaKnown RBP15.02□□□□□ -0.01
ERCC8-205ENST00000477893 POTEHQ6S545 545 aa15□□□□□ -0.01
ERCC8-205ENST00000477893 TOPBP1Q92547 1522 aa14.88□□□□□ -0.03
ERCC8-205ENST00000477893 DNMBPQ6XZF7 1577 aa14.85□□□□□ -0.03
ERCC8-205ENST00000477893 NPM3O75607 178 aaKnown RBP14.83□□□□□ -0.04
ERCC8-205ENST00000477893 IFT140Q96RY7 1462 aa14.81□□□□□ -0.04
ERCC8-205ENST00000477893 ZNF608Q9ULD9 1512 aaPredicted RBP14.81□□□□□ -0.04
ERCC8-205ENST00000477893 ABCC8Q09428 1581 aa14.8□□□□□ -0.04
ERCC8-205ENST00000477893 CAPN15O75808 1086 aa14.79□□□□□ -0.04
ERCC8-205ENST00000477893 U3KPZ7 1027 aaPredicted RBP14.79□□□□□ -0.04
ERCC8-205ENST00000477893 DSG3P32926 999 aa14.78□□□□□ -0.04
ERCC8-205ENST00000477893 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
ERCC8-205ENST00000477893 POLA1P09884 1462 aaPredicted RBP14.75□□□□□ -0.05
ERCC8-205ENST00000477893 EIF4G3O43432 1585 aaKnown RBP14.74□□□□□ -0.05
ERCC8-205ENST00000477893 RAD54L2Q9Y4B4 1467 aa14.73□□□□□ -0.05
ERCC8-205ENST00000477893 CUX1P39880 1505 aa14.72□□□□□ -0.05
ERCC8-205ENST00000477893 FGD5Q6ZNL6 1462 aa14.71□□□□□ -0.05
ERCC8-205ENST00000477893 TARBP1Q13395 1621 aaKnown RBP14.71□□□□□ -0.05
ERCC8-205ENST00000477893 AQRO60306 1485 aaKnown RBP eCLIP14.7□□□□□ -0.06
ERCC8-205ENST00000477893 SOGA1O94964 1423 aa14.67□□□□□ -0.06
ERCC8-205ENST00000477893 TDRD9Q8NDG6 1382 aaKnown RBP14.66□□□□□ -0.06
ERCC8-205ENST00000477893 OSCARQ8IYS5 282 aa14.66□□□□□ -0.06
ERCC8-205ENST00000477893 TRIM41Q8WV44 630 aa14.62□□□□□ -0.07
ERCC8-205ENST00000477893 FBLN2P98095 1184 aa14.61□□□□□ -0.07
ERCC8-205ENST00000477893 CHD1O14646 1710 aa14.58□□□□□ -0.08
ERCC8-205ENST00000477893 SNAPC4Q5SXM2 1469 aa14.57□□□□□ -0.08
ERCC8-205ENST00000477893 WRNQ14191 1432 aaPredicted RBP eCLIP14.57□□□□□ -0.08
ERCC8-205ENST00000477893 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
ERCC8-205ENST00000477893 WDR97A6NE52 1622 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms