RNA–Protein interactions for RNA: ENST00000476858.5

APTX-220, Transcript of aprataxin, humanhuman

TSL 1 (best) BASIC

Gene APTX, Length 1,068 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-220ENST00000476858 NISCHQ9Y2I1 1504 aa30.4■■■□□ 2.46
APTX-220ENST00000476858 AEBP2Q6ZN18 517 aaPredicted RBP28.86■■■□□ 2.21
APTX-220ENST00000476858 CHIC1Q5VXU3 224 aa27.07■■□□□ 1.92
APTX-220ENST00000476858 CCDC180Q9P1Z9 1646 aa26.93■■□□□ 1.9
APTX-220ENST00000476858 ABCC9O60706 1549 aa26.5■■□□□ 1.83
APTX-220ENST00000476858 DCAF8L2P0C7V8 631 aa25.42■■□□□ 1.66
APTX-220ENST00000476858 RB1CC1Q8TDY2 1594 aa25.34■■□□□ 1.65
APTX-220ENST00000476858 ZCCHC6Q5VYS8 1495 aaKnown RBP25.34■■□□□ 1.65
APTX-220ENST00000476858 NACADO15069 1562 aa25.31■■□□□ 1.64
APTX-220ENST00000476858 MYO15BQ96JP2 1530 aa25.12■■□□□ 1.61
APTX-220ENST00000476858 DCAF1Q9Y4B6 1507 aa25.05■■□□□ 1.6
APTX-220ENST00000476858 UNC13AQ9UPW8 1703 aa24.91■■□□□ 1.58
APTX-220ENST00000476858 PABPN1Q86U42 306 aaKnown RBP eCLIP24.8■■□□□ 1.56
APTX-220ENST00000476858 BICRAQ9NZM4 1560 aa24.74■■□□□ 1.55
APTX-220ENST00000476858 SCRIBQ14160 1630 aa24.72■■□□□ 1.55
APTX-220ENST00000476858 SENP3Q9H4L4 574 aaPredicted RBP24.56■■□□□ 1.52
APTX-220ENST00000476858 DNAJC5BQ9UF47 199 aa24.43■■□□□ 1.5
APTX-220ENST00000476858 PHF23Q9BUL5 403 aaPredicted RBP24.27■■□□□ 1.48
APTX-220ENST00000476858 SHROOM4Q9ULL8 1493 aa24.21■■□□□ 1.47
APTX-220ENST00000476858 EIF4G1Q04637 1599 aaKnown RBP24.01■■□□□ 1.43
APTX-220ENST00000476858 CC2D2AQ9P2K1 1620 aa23.92■■□□□ 1.42
APTX-220ENST00000476858 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
APTX-220ENST00000476858 SMARCA4P51532 1647 aa23.59■■□□□ 1.37
APTX-220ENST00000476858 MROH2BQ7Z745 1585 aa23.52■■□□□ 1.36
APTX-220ENST00000476858 BAZ1AQ9NRL2 1556 aaPredicted RBP23.49■■□□□ 1.35
APTX-220ENST00000476858 ATAD2BQ9ULI0 1458 aa23.46■■□□□ 1.35
APTX-220ENST00000476858 NCAPD3P42695 1498 aa23.4■■□□□ 1.34
APTX-220ENST00000476858 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
APTX-220ENST00000476858 PEG3Q9GZU2 1588 aa23.31■■□□□ 1.32
APTX-220ENST00000476858 WIZO95785 1651 aa23.26■■□□□ 1.31
APTX-220ENST00000476858 HMGXB3Q12766 1538 aa23.26■■□□□ 1.31
APTX-220ENST00000476858 BAZ1BQ9UIG0 1483 aaKnown RBP23.23■■□□□ 1.31
APTX-220ENST00000476858 RSF1Q96T23 1441 aaPredicted RBP23.21■■□□□ 1.31
APTX-220ENST00000476858 FOXD1Q16676 465 aa23.01■■□□□ 1.27
APTX-220ENST00000476858 NESP48681 1621 aa22.99■■□□□ 1.27
APTX-220ENST00000476858 TOP2AP11388 1531 aaKnown RBP22.92■■□□□ 1.26
APTX-220ENST00000476858 LAMC3Q9Y6N6 1575 aa22.74■■□□□ 1.23
APTX-220ENST00000476858 CADPSQ9ULU8 1353 aa22.72■■□□□ 1.23
APTX-220ENST00000476858 ERCC6Q03468 1493 aa22.72■■□□□ 1.23
APTX-220ENST00000476858 CCDC88BA6NC98 1476 aa22.71■■□□□ 1.23
APTX-220ENST00000476858 SUPT5HO00267 1087 aaKnown RBP22.66■■□□□ 1.22
APTX-220ENST00000476858 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
APTX-220ENST00000476858 CFTRP13569 1480 aa22.6■■□□□ 1.21
APTX-220ENST00000476858 THOC2Q8NI27 1593 aaKnown RBP22.56■■□□□ 1.2
APTX-220ENST00000476858 PDS5BQ9NTI5 1447 aa22.56■■□□□ 1.2
APTX-220ENST00000476858 FANCD2Q9BXW9 1451 aa22.49■■□□□ 1.19
APTX-220ENST00000476858 CUX2O14529 1486 aa22.43■■□□□ 1.18
APTX-220ENST00000476858 CEP164Q9UPV0 1460 aa22.42■■□□□ 1.18
APTX-220ENST00000476858 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
APTX-220ENST00000476858 PRDM2Q13029 1718 aa22.38■■□□□ 1.17
APTX-220ENST00000476858 WDR62O43379 1518 aa22.34■■□□□ 1.17
APTX-220ENST00000476858 URB2Q14146 1524 aaKnown RBP22.34■■□□□ 1.17
APTX-220ENST00000476858 TOPBP1Q92547 1522 aa22.15■■□□□ 1.14
APTX-220ENST00000476858 DNMBPQ6XZF7 1577 aa22.08■■□□□ 1.13
APTX-220ENST00000476858 CUX1P39880 1505 aa22.04■■□□□ 1.12
APTX-220ENST00000476858 ZNF608Q9ULD9 1512 aaPredicted RBP21.99■■□□□ 1.11
APTX-220ENST00000476858 ABCC8Q09428 1581 aa21.98■■□□□ 1.11
APTX-220ENST00000476858 POLA1P09884 1462 aaPredicted RBP21.97■■□□□ 1.11
APTX-220ENST00000476858 RAD54L2Q9Y4B4 1467 aa21.95■■□□□ 1.1
APTX-220ENST00000476858 TARBP1Q13395 1621 aaKnown RBP21.93■■□□□ 1.1
APTX-220ENST00000476858 FGD5Q6ZNL6 1462 aa21.93■■□□□ 1.1
APTX-220ENST00000476858 IFT140Q96RY7 1462 aa21.93■■□□□ 1.1
APTX-220ENST00000476858 SYNJ1O43426 1573 aa21.87■■□□□ 1.09
APTX-220ENST00000476858 SOGA1O94964 1423 aa21.84■■□□□ 1.09
APTX-220ENST00000476858 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.09
APTX-220ENST00000476858 EIF4G3O43432 1585 aaKnown RBP21.83■■□□□ 1.09
APTX-220ENST00000476858 WRNQ14191 1432 aaPredicted RBP eCLIP21.82■■□□□ 1.08
APTX-220ENST00000476858 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
APTX-220ENST00000476858 TDRD9Q8NDG6 1382 aaKnown RBP21.79■■□□□ 1.08
APTX-220ENST00000476858 BIVM-ERCC5R4GMW8 1640 aa21.78■■□□□ 1.08
APTX-220ENST00000476858 TOP2BQ02880 1626 aa21.77■■□□□ 1.08
APTX-220ENST00000476858 WDR97A6NE52 1622 aa21.75■■□□□ 1.07
APTX-220ENST00000476858 ABCA10Q8WWZ4 1543 aa21.66■■□□□ 1.06
APTX-220ENST00000476858 ABCA5Q8WWZ7 1642 aa21.62■■□□□ 1.05
APTX-220ENST00000476858 SNAPC4Q5SXM2 1469 aa21.6■■□□□ 1.05
APTX-220ENST00000476858 POTEDQ86YR6 584 aa21.59■■□□□ 1.05
APTX-220ENST00000476858 GAPVD1Q14C86 1478 aa21.58■■□□□ 1.05
APTX-220ENST00000476858 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
APTX-220ENST00000476858 CHD1O14646 1710 aa21.56■■□□□ 1.04
APTX-220ENST00000476858 GRIN2BQ13224 1484 aa21.56■■□□□ 1.04
APTX-220ENST00000476858 MSH5O43196 834 aa21.55■■□□□ 1.04
APTX-220ENST00000476858 OSCARQ8IYS5 282 aa21.52■■□□□ 1.04
APTX-220ENST00000476858 FBLN2P98095 1184 aa21.5■■□□□ 1.03
APTX-220ENST00000476858 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
APTX-220ENST00000476858 MAGI1Q96QZ7 1491 aaPredicted RBP21.46■■□□□ 1.03
APTX-220ENST00000476858 SYNJ2O15056 1496 aa21.42■■□□□ 1.02
APTX-220ENST00000476858 PIAS4Q8N2W9 510 aaPredicted RBP21.42■■□□□ 1.02
APTX-220ENST00000476858 ADAMTS12P58397 1594 aa21.4■■□□□ 1.02
APTX-220ENST00000476858 CHMP7Q8WUX9 453 aaPredicted RBP21.39■■□□□ 1.01
APTX-220ENST00000476858 ERICH3Q5RHP9 1530 aa21.36■■□□□ 1.01
APTX-220ENST00000476858 RUSC2Q8N2Y8 1516 aa21.35■■□□□ 1.01
APTX-220ENST00000476858 PPP6R1Q9UPN7 881 aa21.34■■□□□ 1.01
APTX-220ENST00000476858 CLASP1Q7Z460 1538 aa21.32■■□□□ 1
APTX-220ENST00000476858 IGF1RP08069 1367 aa21.32■■□□□ 1
APTX-220ENST00000476858 GRIN2AQ12879 1464 aa21.32■■□□□ 1
APTX-220ENST00000476858 FHAD1B1AJZ9 1412 aa21.31■■□□□ 1
APTX-220ENST00000476858 KIF27Q86VH2 1401 aa21.31■■□□□ 1
APTX-220ENST00000476858 TRIM41Q8WV44 630 aa21.3■■□□□ 1
APTX-220ENST00000476858 RIMBP3CA6NJZ7 1639 aa21.28■■□□□ 1
APTX-220ENST00000476858 RIMBP3BA6NNM3 1639 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms