RNA–Protein interactions for RNA: ENST00000476594.1

CCM2-208, Transcript of CCM2 scaffold protein, humanhuman

TSL 3

Gene CCM2, Length 533 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-208ENST00000476594 NISCHQ9Y2I1 1504 aa24.89■■□□□ 1.57
CCM2-208ENST00000476594 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
CCM2-208ENST00000476594 ABCC9O60706 1549 aa21.86■■□□□ 1.09
CCM2-208ENST00000476594 RB1CC1Q8TDY2 1594 aa21.05■□□□□ 0.96
CCM2-208ENST00000476594 NACADO15069 1562 aa20.97■□□□□ 0.95
CCM2-208ENST00000476594 DCAF8L2P0C7V8 631 aa20.89■□□□□ 0.93
CCM2-208ENST00000476594 MYO15BQ96JP2 1530 aa20.8■□□□□ 0.92
CCM2-208ENST00000476594 ZCCHC6Q5VYS8 1495 aaKnown RBP20.71■□□□□ 0.91
CCM2-208ENST00000476594 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
CCM2-208ENST00000476594 UNC13AQ9UPW8 1703 aa20.43■□□□□ 0.86
CCM2-208ENST00000476594 PABPN1Q86U42 306 aaKnown RBP eCLIP20.37■□□□□ 0.85
CCM2-208ENST00000476594 BICRAQ9NZM4 1560 aa20.28■□□□□ 0.84
CCM2-208ENST00000476594 SHROOM4Q9ULL8 1493 aa20.24■□□□□ 0.83
CCM2-208ENST00000476594 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
CCM2-208ENST00000476594 DNAJC5BQ9UF47 199 aa20.09■□□□□ 0.81
CCM2-208ENST00000476594 AEBP2Q6ZN18 517 aaPredicted RBP19.94■□□□□ 0.78
CCM2-208ENST00000476594 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.76
CCM2-208ENST00000476594 CC2D2AQ9P2K1 1620 aa19.77■□□□□ 0.76
CCM2-208ENST00000476594 CECR2Q9BXF3 1484 aa19.7■□□□□ 0.74
CCM2-208ENST00000476594 BAZ1AQ9NRL2 1556 aaPredicted RBP19.36■□□□□ 0.69
CCM2-208ENST00000476594 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
CCM2-208ENST00000476594 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
CCM2-208ENST00000476594 NCAPD3P42695 1498 aa19.31■□□□□ 0.68
CCM2-208ENST00000476594 ATAD2BQ9ULI0 1458 aa19.28■□□□□ 0.68
CCM2-208ENST00000476594 HMGXB3Q12766 1538 aa19.24■□□□□ 0.67
CCM2-208ENST00000476594 PEG3Q9GZU2 1588 aa19.18■□□□□ 0.66
CCM2-208ENST00000476594 BAZ1BQ9UIG0 1483 aaKnown RBP19.16■□□□□ 0.66
CCM2-208ENST00000476594 MROH2BQ7Z745 1585 aa19.13■□□□□ 0.65
CCM2-208ENST00000476594 ERCC6Q03468 1493 aa18.96■□□□□ 0.63
CCM2-208ENST00000476594 WIZO95785 1651 aa18.92■□□□□ 0.62
CCM2-208ENST00000476594 RSF1Q96T23 1441 aaPredicted RBP18.88■□□□□ 0.61
CCM2-208ENST00000476594 LAMC3Q9Y6N6 1575 aa18.87■□□□□ 0.61
CCM2-208ENST00000476594 CHIC1Q5VXU3 224 aa18.85■□□□□ 0.61
CCM2-208ENST00000476594 NESP48681 1621 aa18.82■□□□□ 0.6
CCM2-208ENST00000476594 CUX2O14529 1486 aa18.8■□□□□ 0.6
CCM2-208ENST00000476594 PDS5BQ9NTI5 1447 aa18.78■□□□□ 0.6
CCM2-208ENST00000476594 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
CCM2-208ENST00000476594 CADPSQ9ULU8 1353 aa18.76■□□□□ 0.59
CCM2-208ENST00000476594 DNAJC5Q9H3Z4 198 aa18.65■□□□□ 0.58
CCM2-208ENST00000476594 KIF21AQ7Z4S6 1674 aa18.63■□□□□ 0.57
CCM2-208ENST00000476594 THOC2Q8NI27 1593 aaKnown RBP18.62■□□□□ 0.57
CCM2-208ENST00000476594 CFTRP13569 1480 aa18.59■□□□□ 0.57
CCM2-208ENST00000476594 CEP164Q9UPV0 1460 aa18.57■□□□□ 0.56
CCM2-208ENST00000476594 MRC2Q9UBG0 1479 aa18.55■□□□□ 0.56
CCM2-208ENST00000476594 FANCD2Q9BXW9 1451 aa18.54■□□□□ 0.56
CCM2-208ENST00000476594 CCDC88BA6NC98 1476 aa18.52■□□□□ 0.55
CCM2-208ENST00000476594 WDR62O43379 1518 aa18.48■□□□□ 0.55
CCM2-208ENST00000476594 PRDM2Q13029 1718 aa18.46■□□□□ 0.55
CCM2-208ENST00000476594 SUPT5HO00267 1087 aaKnown RBP18.31■□□□□ 0.52
CCM2-208ENST00000476594 URB2Q14146 1524 aaKnown RBP18.31■□□□□ 0.52
CCM2-208ENST00000476594 ABCC8Q09428 1581 aa18.3■□□□□ 0.52
CCM2-208ENST00000476594 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
CCM2-208ENST00000476594 DNMBPQ6XZF7 1577 aa18.2■□□□□ 0.5
CCM2-208ENST00000476594 IFT140Q96RY7 1462 aa18.19■□□□□ 0.5
CCM2-208ENST00000476594 POLA1P09884 1462 aaPredicted RBP18.04■□□□□ 0.48
CCM2-208ENST00000476594 ZNF608Q9ULD9 1512 aaPredicted RBP18.01■□□□□ 0.47
CCM2-208ENST00000476594 EIF4G3O43432 1585 aaKnown RBP17.99■□□□□ 0.47
CCM2-208ENST00000476594 SOGA1O94964 1423 aa17.98■□□□□ 0.47
CCM2-208ENST00000476594 TARBP1Q13395 1621 aaKnown RBP17.98■□□□□ 0.47
CCM2-208ENST00000476594 OSCARQ8IYS5 282 aa17.98■□□□□ 0.47
CCM2-208ENST00000476594 FGD5Q6ZNL6 1462 aa17.97■□□□□ 0.47
CCM2-208ENST00000476594 CUX1P39880 1505 aa17.97■□□□□ 0.47
CCM2-208ENST00000476594 WDR97A6NE52 1622 aa17.96■□□□□ 0.47
CCM2-208ENST00000476594 RAD54L2Q9Y4B4 1467 aa17.92■□□□□ 0.46
CCM2-208ENST00000476594 AQRO60306 1485 aaKnown RBP eCLIP17.91■□□□□ 0.46
CCM2-208ENST00000476594 WRNQ14191 1432 aaPredicted RBP eCLIP17.87■□□□□ 0.45
CCM2-208ENST00000476594 TDRD9Q8NDG6 1382 aaKnown RBP17.86■□□□□ 0.45
CCM2-208ENST00000476594 TOP2BQ02880 1626 aa17.83■□□□□ 0.44
CCM2-208ENST00000476594 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
CCM2-208ENST00000476594 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
CCM2-208ENST00000476594 BIVM-ERCC5R4GMW8 1640 aa17.81■□□□□ 0.44
CCM2-208ENST00000476594 FBLN2P98095 1184 aa17.81■□□□□ 0.44
CCM2-208ENST00000476594 MAGI1Q96QZ7 1491 aaPredicted RBP17.81■□□□□ 0.44
CCM2-208ENST00000476594 GAPVD1Q14C86 1478 aa17.78■□□□□ 0.44
CCM2-208ENST00000476594 SNAPC4Q5SXM2 1469 aa17.78■□□□□ 0.44
CCM2-208ENST00000476594 CHD1O14646 1710 aa17.77■□□□□ 0.44
CCM2-208ENST00000476594 SYNJ1O43426 1573 aa17.75■□□□□ 0.43
CCM2-208ENST00000476594 CHMP7Q8WUX9 453 aaPredicted RBP17.75■□□□□ 0.43
CCM2-208ENST00000476594 ABCA5Q8WWZ7 1642 aa17.73■□□□□ 0.43
CCM2-208ENST00000476594 PBRM1Q86U86 1689 aa17.73■□□□□ 0.43
CCM2-208ENST00000476594 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
CCM2-208ENST00000476594 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
CCM2-208ENST00000476594 ARHGEF11O15085 1522 aa17.65■□□□□ 0.42
CCM2-208ENST00000476594 RIMBP3CA6NJZ7 1639 aa17.65■□□□□ 0.42
CCM2-208ENST00000476594 RIMBP3BA6NNM3 1639 aa17.65■□□□□ 0.42
CCM2-208ENST00000476594 RIMBP3Q9UFD9 1639 aa17.65■□□□□ 0.42
CCM2-208ENST00000476594 ERICH3Q5RHP9 1530 aa17.62■□□□□ 0.41
CCM2-208ENST00000476594 ADAMTS12P58397 1594 aa17.59■□□□□ 0.41
CCM2-208ENST00000476594 FHAD1B1AJZ9 1412 aa17.59■□□□□ 0.41
CCM2-208ENST00000476594 CLASP1Q7Z460 1538 aa17.58■□□□□ 0.41
CCM2-208ENST00000476594 GRIN2AQ12879 1464 aa17.56■□□□□ 0.4
CCM2-208ENST00000476594 KIF27Q86VH2 1401 aa17.54■□□□□ 0.4
CCM2-208ENST00000476594 CYB5RLQ6IPT4 315 aa17.49■□□□□ 0.39
CCM2-208ENST00000476594 NUP160Q12769 1436 aa17.48■□□□□ 0.39
CCM2-208ENST00000476594 ARAP1Q96P48 1450 aa17.47■□□□□ 0.39
CCM2-208ENST00000476594 CUL7Q14999 1698 aa17.45■□□□□ 0.38
CCM2-208ENST00000476594 CEP170Q5SW79 1584 aa17.44■□□□□ 0.38
CCM2-208ENST00000476594 IGF1RP08069 1367 aa17.4■□□□□ 0.38
CCM2-208ENST00000476594 SHROOM2Q13796 1616 aa17.35■□□□□ 0.37
CCM2-208ENST00000476594 CARMIL1Q5VZK9 1371 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms