RNA–Protein interactions for RNA: ENST00000476061.5

PTPN7-208, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 4

Gene PTPN7, Length 550 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-208ENST00000476061 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
PTPN7-208ENST00000476061 CCDC180Q9P1Z9 1646 aa22.34■■□□□ 1.17
PTPN7-208ENST00000476061 ABCC9O60706 1549 aa22.09■■□□□ 1.13
PTPN7-208ENST00000476061 RB1CC1Q8TDY2 1594 aa21.17■□□□□ 0.98
PTPN7-208ENST00000476061 NACADO15069 1562 aa21.06■□□□□ 0.96
PTPN7-208ENST00000476061 MYO15BQ96JP2 1530 aa20.84■□□□□ 0.93
PTPN7-208ENST00000476061 DCAF8L2P0C7V8 631 aa20.78■□□□□ 0.92
PTPN7-208ENST00000476061 UNC13AQ9UPW8 1703 aa20.73■□□□□ 0.91
PTPN7-208ENST00000476061 DNAJC5BQ9UF47 199 aa20.61■□□□□ 0.89
PTPN7-208ENST00000476061 ZCCHC6Q5VYS8 1495 aaKnown RBP20.6■□□□□ 0.89
PTPN7-208ENST00000476061 DCAF1Q9Y4B6 1507 aa20.59■□□□□ 0.89
PTPN7-208ENST00000476061 BICRAQ9NZM4 1560 aa20.53■□□□□ 0.88
PTPN7-208ENST00000476061 PABPN1Q86U42 306 aaKnown RBP eCLIP20.52■□□□□ 0.88
PTPN7-208ENST00000476061 SHROOM4Q9ULL8 1493 aa20.34■□□□□ 0.85
PTPN7-208ENST00000476061 SCRIBQ14160 1630 aa20.23■□□□□ 0.83
PTPN7-208ENST00000476061 CC2D2AQ9P2K1 1620 aa20.03■□□□□ 0.8
PTPN7-208ENST00000476061 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
PTPN7-208ENST00000476061 CECR2Q9BXF3 1484 aa19.92■□□□□ 0.78
PTPN7-208ENST00000476061 NCAPD3P42695 1498 aa19.41■□□□□ 0.7
PTPN7-208ENST00000476061 SMARCA4P51532 1647 aa19.36■□□□□ 0.69
PTPN7-208ENST00000476061 ATAD2BQ9ULI0 1458 aa19.34■□□□□ 0.69
PTPN7-208ENST00000476061 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
PTPN7-208ENST00000476061 BAZ1AQ9NRL2 1556 aaPredicted RBP19.3■□□□□ 0.68
PTPN7-208ENST00000476061 HMGXB3Q12766 1538 aa19.3■□□□□ 0.68
PTPN7-208ENST00000476061 PEG3Q9GZU2 1588 aa19.23■□□□□ 0.67
PTPN7-208ENST00000476061 BAZ1BQ9UIG0 1483 aaKnown RBP19.15■□□□□ 0.66
PTPN7-208ENST00000476061 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
PTPN7-208ENST00000476061 CUX2O14529 1486 aa19.09■□□□□ 0.65
PTPN7-208ENST00000476061 ERCC6Q03468 1493 aa19.08■□□□□ 0.64
PTPN7-208ENST00000476061 NESP48681 1621 aa19■□□□□ 0.63
PTPN7-208ENST00000476061 LAMC3Q9Y6N6 1575 aa18.99■□□□□ 0.63
PTPN7-208ENST00000476061 DNAJC5Q9H3Z4 198 aa18.93■□□□□ 0.62
PTPN7-208ENST00000476061 WIZO95785 1651 aa18.9■□□□□ 0.62
PTPN7-208ENST00000476061 THOC2Q8NI27 1593 aaKnown RBP18.87■□□□□ 0.61
PTPN7-208ENST00000476061 KIF21AQ7Z4S6 1674 aa18.84■□□□□ 0.61
PTPN7-208ENST00000476061 PDS5BQ9NTI5 1447 aa18.83■□□□□ 0.6
PTPN7-208ENST00000476061 CADPSQ9ULU8 1353 aa18.8■□□□□ 0.6
PTPN7-208ENST00000476061 RSF1Q96T23 1441 aaPredicted RBP18.74■□□□□ 0.59
PTPN7-208ENST00000476061 TOP2AP11388 1531 aaKnown RBP18.68■□□□□ 0.58
PTPN7-208ENST00000476061 MRC2Q9UBG0 1479 aa18.65■□□□□ 0.58
PTPN7-208ENST00000476061 WDR62O43379 1518 aa18.64■□□□□ 0.57
PTPN7-208ENST00000476061 CFTRP13569 1480 aa18.62■□□□□ 0.57
PTPN7-208ENST00000476061 CEP164Q9UPV0 1460 aa18.59■□□□□ 0.57
PTPN7-208ENST00000476061 FANCD2Q9BXW9 1451 aa18.57■□□□□ 0.56
PTPN7-208ENST00000476061 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
PTPN7-208ENST00000476061 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
PTPN7-208ENST00000476061 URB2Q14146 1524 aaKnown RBP18.41■□□□□ 0.54
PTPN7-208ENST00000476061 ABCC8Q09428 1581 aa18.28■□□□□ 0.52
PTPN7-208ENST00000476061 TOPBP1Q92547 1522 aa18.24■□□□□ 0.51
PTPN7-208ENST00000476061 IFT140Q96RY7 1462 aa18.23■□□□□ 0.51
PTPN7-208ENST00000476061 DNMBPQ6XZF7 1577 aa18.21■□□□□ 0.51
PTPN7-208ENST00000476061 OSCARQ8IYS5 282 aa18.18■□□□□ 0.5
PTPN7-208ENST00000476061 ZNF608Q9ULD9 1512 aaPredicted RBP18.14■□□□□ 0.49
PTPN7-208ENST00000476061 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
PTPN7-208ENST00000476061 EIF4G3O43432 1585 aaKnown RBP18.1■□□□□ 0.49
PTPN7-208ENST00000476061 POLA1P09884 1462 aaPredicted RBP18.05■□□□□ 0.48
PTPN7-208ENST00000476061 TRIM41Q8WV44 630 aa18.04■□□□□ 0.48
PTPN7-208ENST00000476061 WDR97A6NE52 1622 aa18■□□□□ 0.47
PTPN7-208ENST00000476061 AQRO60306 1485 aaKnown RBP eCLIP17.98■□□□□ 0.471e-7■■■■□ 23
PTPN7-208ENST00000476061 CHD1O14646 1710 aa17.98■□□□□ 0.47
PTPN7-208ENST00000476061 RIMBP3CA6NJZ7 1639 aa17.96■□□□□ 0.47
PTPN7-208ENST00000476061 RIMBP3BA6NNM3 1639 aa17.96■□□□□ 0.47
PTPN7-208ENST00000476061 RIMBP3Q9UFD9 1639 aa17.96■□□□□ 0.47
PTPN7-208ENST00000476061 SOGA1O94964 1423 aa17.96■□□□□ 0.47
PTPN7-208ENST00000476061 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
PTPN7-208ENST00000476061 RAD54L2Q9Y4B4 1467 aa17.95■□□□□ 0.46
PTPN7-208ENST00000476061 CUX1P39880 1505 aa17.94■□□□□ 0.46
PTPN7-208ENST00000476061 ARHGEF11O15085 1522 aa17.9■□□□□ 0.46
PTPN7-208ENST00000476061 TDRD9Q8NDG6 1382 aaKnown RBP17.87■□□□□ 0.45
PTPN7-208ENST00000476061 SUPT5HO00267 1087 aaKnown RBP17.86■□□□□ 0.45
PTPN7-208ENST00000476061 MAGI1Q96QZ7 1491 aaPredicted RBP17.83■□□□□ 0.45
PTPN7-208ENST00000476061 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
PTPN7-208ENST00000476061 SNAPC4Q5SXM2 1469 aa17.82■□□□□ 0.44
PTPN7-208ENST00000476061 PBRM1Q86U86 1689 aa17.8■□□□□ 0.44
PTPN7-208ENST00000476061 FBLN2P98095 1184 aa17.8■□□□□ 0.44
PTPN7-208ENST00000476061 ABCA10Q8WWZ4 1543 aa17.77■□□□□ 0.44
PTPN7-208ENST00000476061 ABCA5Q8WWZ7 1642 aa17.76■□□□□ 0.43
PTPN7-208ENST00000476061 SYNJ1O43426 1573 aa17.76■□□□□ 0.43
PTPN7-208ENST00000476061 CLASP1Q7Z460 1538 aa17.76■□□□□ 0.43
PTPN7-208ENST00000476061 BIVM-ERCC5R4GMW8 1640 aa17.76■□□□□ 0.43
PTPN7-208ENST00000476061 SYNJ2O15056 1496 aa17.75■□□□□ 0.43
PTPN7-208ENST00000476061 GAPVD1Q14C86 1478 aa17.75■□□□□ 0.43
PTPN7-208ENST00000476061 TOP2BQ02880 1626 aa17.73■□□□□ 0.43
PTPN7-208ENST00000476061 CHMP7Q8WUX9 453 aaPredicted RBP17.73■□□□□ 0.43
PTPN7-208ENST00000476061 ARAP1Q96P48 1450 aa17.71■□□□□ 0.43
PTPN7-208ENST00000476061 CYB5RLQ6IPT4 315 aa17.7■□□□□ 0.42
PTPN7-208ENST00000476061 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
PTPN7-208ENST00000476061 ADAMTS12P58397 1594 aa17.6■□□□□ 0.41
PTPN7-208ENST00000476061 GRIN2AQ12879 1464 aa17.59■□□□□ 0.41
PTPN7-208ENST00000476061 ERICH3Q5RHP9 1530 aa17.57■□□□□ 0.4
PTPN7-208ENST00000476061 FHAD1B1AJZ9 1412 aa17.55■□□□□ 0.4
PTPN7-208ENST00000476061 NUP160Q12769 1436 aa17.54■□□□□ 0.4
PTPN7-208ENST00000476061 CEP170Q5SW79 1584 aa17.52■□□□□ 0.39
PTPN7-208ENST00000476061 SHROOM2Q13796 1616 aa17.5■□□□□ 0.39
PTPN7-208ENST00000476061 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
PTPN7-208ENST00000476061 ERCC6L2Q5T890 1561 aa17.43■□□□□ 0.38
PTPN7-208ENST00000476061 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
PTPN7-208ENST00000476061 CUL7Q14999 1698 aa17.36■□□□□ 0.37
PTPN7-208ENST00000476061 KIF27Q86VH2 1401 aa17.35■□□□□ 0.37
PTPN7-208ENST00000476061 PRG4Q92954 1404 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms