RNA–Protein interactions for RNA: ENST00000475952.1

NUDCD3-206, Transcript of NudC domain containing 3, humanhuman

TSL 2

Gene NUDCD3, Length 983 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-206ENST00000475952 NISCHQ9Y2I1 1504 aa28.1■■■□□ 2.09
NUDCD3-206ENST00000475952 ABCC9O60706 1549 aa25.56■■□□□ 1.68
NUDCD3-206ENST00000475952 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
NUDCD3-206ENST00000475952 DNAJC5BQ9UF47 199 aa24.36■■□□□ 1.49
NUDCD3-206ENST00000475952 RB1CC1Q8TDY2 1594 aa24.15■■□□□ 1.46
NUDCD3-206ENST00000475952 NACADO15069 1562 aa23.86■■□□□ 1.41
NUDCD3-206ENST00000475952 UNC13AQ9UPW8 1703 aa23.76■■□□□ 1.39
NUDCD3-206ENST00000475952 PABPN1Q86U42 306 aaKnown RBP eCLIP23.64■■□□□ 1.37
NUDCD3-206ENST00000475952 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
NUDCD3-206ENST00000475952 DCAF8L2P0C7V8 631 aa23.46■■□□□ 1.35
NUDCD3-206ENST00000475952 MYO15BQ96JP2 1530 aa23.45■■□□□ 1.34
NUDCD3-206ENST00000475952 ZCCHC6Q5VYS8 1495 aaKnown RBP23.38■■□□□ 1.33
NUDCD3-206ENST00000475952 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
NUDCD3-206ENST00000475952 CC2D2AQ9P2K1 1620 aa23.12■■□□□ 1.29
NUDCD3-206ENST00000475952 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
NUDCD3-206ENST00000475952 CECR2Q9BXF3 1484 aa23.06■■□□□ 1.28
NUDCD3-206ENST00000475952 EIF4G1Q04637 1599 aaKnown RBP22.95■■□□□ 1.26
NUDCD3-206ENST00000475952 SCRIBQ14160 1630 aa22.93■■□□□ 1.26
NUDCD3-206ENST00000475952 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
NUDCD3-206ENST00000475952 CUX2O14529 1486 aa22.23■■□□□ 1.15
NUDCD3-206ENST00000475952 ERCC6Q03468 1493 aa22.08■■□□□ 1.12
NUDCD3-206ENST00000475952 NCAPD3P42695 1498 aa22■■□□□ 1.11
NUDCD3-206ENST00000475952 SMARCA4P51532 1647 aa21.92■■□□□ 1.1
NUDCD3-206ENST00000475952 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
NUDCD3-206ENST00000475952 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
NUDCD3-206ENST00000475952 NESP48681 1621 aa21.84■■□□□ 1.09
NUDCD3-206ENST00000475952 BAZ1AQ9NRL2 1556 aaPredicted RBP21.84■■□□□ 1.09
NUDCD3-206ENST00000475952 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
NUDCD3-206ENST00000475952 THOC2Q8NI27 1593 aaKnown RBP21.8■■□□□ 1.08
NUDCD3-206ENST00000475952 PEG3Q9GZU2 1588 aa21.7■■□□□ 1.06
NUDCD3-206ENST00000475952 KIF21AQ7Z4S6 1674 aa21.65■■□□□ 1.06
NUDCD3-206ENST00000475952 BAZ1BQ9UIG0 1483 aaKnown RBP21.64■■□□□ 1.05
NUDCD3-206ENST00000475952 MROH2BQ7Z745 1585 aa21.63■■□□□ 1.05
NUDCD3-206ENST00000475952 LAMC3Q9Y6N6 1575 aa21.63■■□□□ 1.05
NUDCD3-206ENST00000475952 WIZO95785 1651 aa21.47■■□□□ 1.03
NUDCD3-206ENST00000475952 TRIM41Q8WV44 630 aa21.47■■□□□ 1.03
NUDCD3-206ENST00000475952 PDS5BQ9NTI5 1447 aa21.44■■□□□ 1.02
NUDCD3-206ENST00000475952 WDR62O43379 1518 aa21.34■■□□□ 1.01
NUDCD3-206ENST00000475952 MRC2Q9UBG0 1479 aa21.33■■□□□ 1.01
NUDCD3-206ENST00000475952 CADPSQ9ULU8 1353 aa21.27■■□□□ 1
NUDCD3-206ENST00000475952 RSF1Q96T23 1441 aaPredicted RBP21.26■□□□□ 0.99
NUDCD3-206ENST00000475952 TOP2AP11388 1531 aaKnown RBP21.22■□□□□ 0.99
NUDCD3-206ENST00000475952 CEP164Q9UPV0 1460 aa21.15■□□□□ 0.98
NUDCD3-206ENST00000475952 PRDM2Q13029 1718 aa21.09■□□□□ 0.97
NUDCD3-206ENST00000475952 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
NUDCD3-206ENST00000475952 OSCARQ8IYS5 282 aa21.03■□□□□ 0.96
NUDCD3-206ENST00000475952 RIMBP3CA6NJZ7 1639 aa20.98■□□□□ 0.95
NUDCD3-206ENST00000475952 RIMBP3BA6NNM3 1639 aa20.98■□□□□ 0.95
NUDCD3-206ENST00000475952 RIMBP3Q9UFD9 1639 aa20.98■□□□□ 0.95
NUDCD3-206ENST00000475952 CFTRP13569 1480 aa20.98■□□□□ 0.95
NUDCD3-206ENST00000475952 URB2Q14146 1524 aaKnown RBP20.97■□□□□ 0.95
NUDCD3-206ENST00000475952 CCDC88BA6NC98 1476 aa20.88■□□□□ 0.93
NUDCD3-206ENST00000475952 ARHGEF11O15085 1522 aa20.82■□□□□ 0.92
NUDCD3-206ENST00000475952 ZNF608Q9ULD9 1512 aaPredicted RBP20.78■□□□□ 0.92
NUDCD3-206ENST00000475952 IFT140Q96RY7 1462 aa20.74■□□□□ 0.91
NUDCD3-206ENST00000475952 EIF4G3O43432 1585 aaKnown RBP20.7■□□□□ 0.9
NUDCD3-206ENST00000475952 CHD1O14646 1710 aa20.68■□□□□ 0.9
NUDCD3-206ENST00000475952 TOPBP1Q92547 1522 aa20.64■□□□□ 0.9
NUDCD3-206ENST00000475952 ARAP1Q96P48 1450 aa20.59■□□□□ 0.89
NUDCD3-206ENST00000475952 DNMBPQ6XZF7 1577 aa20.58■□□□□ 0.88
NUDCD3-206ENST00000475952 ABCC8Q09428 1581 aa20.57■□□□□ 0.88
NUDCD3-206ENST00000475952 CYB5RLQ6IPT4 315 aa20.57■□□□□ 0.88
NUDCD3-206ENST00000475952 TARBP1Q13395 1621 aaKnown RBP20.56■□□□□ 0.88
NUDCD3-206ENST00000475952 SUPT5HO00267 1087 aaKnown RBP20.51■□□□□ 0.87
NUDCD3-206ENST00000475952 AQRO60306 1485 aaKnown RBP eCLIP20.49■□□□□ 0.87
NUDCD3-206ENST00000475952 TRHP20396 242 aaPredicted RBP20.48■□□□□ 0.87
NUDCD3-206ENST00000475952 POLA1P09884 1462 aaPredicted RBP20.4■□□□□ 0.86
NUDCD3-206ENST00000475952 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
NUDCD3-206ENST00000475952 FBLN2P98095 1184 aa20.36■□□□□ 0.85
NUDCD3-206ENST00000475952 CUX1P39880 1505 aa20.32■□□□□ 0.84
NUDCD3-206ENST00000475952 RAD54L2Q9Y4B4 1467 aa20.31■□□□□ 0.84
NUDCD3-206ENST00000475952 WDR97A6NE52 1622 aa20.3■□□□□ 0.84
NUDCD3-206ENST00000475952 SNAPC4Q5SXM2 1469 aa20.3■□□□□ 0.84
NUDCD3-206ENST00000475952 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
NUDCD3-206ENST00000475952 SYNJ1O43426 1573 aa20.28■□□□□ 0.84
NUDCD3-206ENST00000475952 TDRD9Q8NDG6 1382 aaKnown RBP20.26■□□□□ 0.83
NUDCD3-206ENST00000475952 SOGA1O94964 1423 aa20.23■□□□□ 0.83
NUDCD3-206ENST00000475952 AEBP2Q6ZN18 517 aaPredicted RBP20.22■□□□□ 0.83
NUDCD3-206ENST00000475952 MAGI1Q96QZ7 1491 aaPredicted RBP20.22■□□□□ 0.83
NUDCD3-206ENST00000475952 BIVM-ERCC5R4GMW8 1640 aa20.2■□□□□ 0.82
NUDCD3-206ENST00000475952 PBRM1Q86U86 1689 aa20.19■□□□□ 0.82
NUDCD3-206ENST00000475952 TOP2BQ02880 1626 aa20.16■□□□□ 0.82
NUDCD3-206ENST00000475952 SYNJ2O15056 1496 aa20.15■□□□□ 0.82
NUDCD3-206ENST00000475952 GRIN2BQ13224 1484 aa20.15■□□□□ 0.82
NUDCD3-206ENST00000475952 CHMP7Q8WUX9 453 aaPredicted RBP20.14■□□□□ 0.81
NUDCD3-206ENST00000475952 GAPVD1Q14C86 1478 aa20.11■□□□□ 0.81
NUDCD3-206ENST00000475952 ABCA5Q8WWZ7 1642 aa20.11■□□□□ 0.81
NUDCD3-206ENST00000475952 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
NUDCD3-206ENST00000475952 ABCA10Q8WWZ4 1543 aa20.08■□□□□ 0.81
NUDCD3-206ENST00000475952 ERCC6L2Q5T890 1561 aa20.02■□□□□ 0.8
NUDCD3-206ENST00000475952 KIF13AQ9H1H9 1805 aa19.96■□□□□ 0.79
NUDCD3-206ENST00000475952 CEP170Q5SW79 1584 aa19.93■□□□□ 0.78
NUDCD3-206ENST00000475952 ADAMTS12P58397 1594 aa19.92■□□□□ 0.78
NUDCD3-206ENST00000475952 GRIN2AQ12879 1464 aa19.91■□□□□ 0.78
NUDCD3-206ENST00000475952 SHROOM2Q13796 1616 aa19.91■□□□□ 0.78
NUDCD3-206ENST00000475952 ERICH3Q5RHP9 1530 aa19.87■□□□□ 0.77
NUDCD3-206ENST00000475952 NUP160Q12769 1436 aa19.86■□□□□ 0.77
NUDCD3-206ENST00000475952 FHAD1B1AJZ9 1412 aa19.78■□□□□ 0.76
NUDCD3-206ENST00000475952 CUL7Q14999 1698 aa19.75■□□□□ 0.75
NUDCD3-206ENST00000475952 KIF27Q86VH2 1401 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms