RNA–Protein interactions for RNA: ENST00000475728.5

ABCF3-211, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 3

Gene ABCF3, Length 503 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-211ENST00000475728 NISCHQ9Y2I1 1504 aa34.92■■■■□ 3.18
ABCF3-211ENST00000475728 CCDC180Q9P1Z9 1646 aa31.05■■■□□ 2.56
ABCF3-211ENST00000475728 ABCC9O60706 1549 aa30.42■■■□□ 2.46
ABCF3-211ENST00000475728 RB1CC1Q8TDY2 1594 aa29.25■■■□□ 2.27
ABCF3-211ENST00000475728 DNAJC5BQ9UF47 199 aa29.24■■■□□ 2.27
ABCF3-211ENST00000475728 NACADO15069 1562 aa29.22■■■□□ 2.27
ABCF3-211ENST00000475728 DCAF8L2P0C7V8 631 aa29.2■■■□□ 2.26
ABCF3-211ENST00000475728 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
ABCF3-211ENST00000475728 MYO15BQ96JP2 1530 aa29.09■■■□□ 2.25
ABCF3-211ENST00000475728 DCAF1Q9Y4B6 1507 aa28.94■■■□□ 2.22
ABCF3-211ENST00000475728 UNC13AQ9UPW8 1703 aa28.41■■■□□ 2.14
ABCF3-211ENST00000475728 PABPN1Q86U42 306 aaKnown RBP eCLIP28.35■■■□□ 2.13
ABCF3-211ENST00000475728 SCRIBQ14160 1630 aa28.29■■■□□ 2.12
ABCF3-211ENST00000475728 BICRAQ9NZM4 1560 aa28.27■■■□□ 2.12
ABCF3-211ENST00000475728 SHROOM4Q9ULL8 1493 aa28.14■■■□□ 2.09
ABCF3-211ENST00000475728 EIF4G1Q04637 1599 aaKnown RBP27.56■■■□□ 2
ABCF3-211ENST00000475728 CC2D2AQ9P2K1 1620 aa27.43■■□□□ 1.98
ABCF3-211ENST00000475728 CECR2Q9BXF3 1484 aa27.43■■□□□ 1.98
ABCF3-211ENST00000475728 DNAJC5Q9H3Z4 198 aa27.33■■□□□ 1.97
ABCF3-211ENST00000475728 BAZ1AQ9NRL2 1556 aaPredicted RBP27.09■■□□□ 1.93
ABCF3-211ENST00000475728 SMARCA4P51532 1647 aa27.07■■□□□ 1.92
ABCF3-211ENST00000475728 SMARCA2P51531 1590 aa26.97■■□□□ 1.91
ABCF3-211ENST00000475728 NCAPD3P42695 1498 aa26.96■■□□□ 1.91
ABCF3-211ENST00000475728 ATAD2BQ9ULI0 1458 aa26.95■■□□□ 1.91
ABCF3-211ENST00000475728 MROH2BQ7Z745 1585 aa26.88■■□□□ 1.89
ABCF3-211ENST00000475728 PEG3Q9GZU2 1588 aa26.84■■□□□ 1.89
ABCF3-211ENST00000475728 HMGXB3Q12766 1538 aa26.83■■□□□ 1.89
ABCF3-211ENST00000475728 BAZ1BQ9UIG0 1483 aaKnown RBP26.75■■□□□ 1.87
ABCF3-211ENST00000475728 RSF1Q96T23 1441 aaPredicted RBP26.6■■□□□ 1.85
ABCF3-211ENST00000475728 WIZO95785 1651 aa26.55■■□□□ 1.84
ABCF3-211ENST00000475728 CUX2O14529 1486 aa26.42■■□□□ 1.82
ABCF3-211ENST00000475728 TOP2AP11388 1531 aaKnown RBP26.35■■□□□ 1.81
ABCF3-211ENST00000475728 ERCC6Q03468 1493 aa26.27■■□□□ 1.8
ABCF3-211ENST00000475728 LAMC3Q9Y6N6 1575 aa26.24■■□□□ 1.79
ABCF3-211ENST00000475728 NESP48681 1621 aa26.22■■□□□ 1.79
ABCF3-211ENST00000475728 CADPSQ9ULU8 1353 aa26.19■■□□□ 1.78
ABCF3-211ENST00000475728 PDS5BQ9NTI5 1447 aa26.12■■□□□ 1.77
ABCF3-211ENST00000475728 CCDC88BA6NC98 1476 aa26.03■■□□□ 1.76
ABCF3-211ENST00000475728 CFTRP13569 1480 aa26.01■■□□□ 1.75
ABCF3-211ENST00000475728 SUPT5HO00267 1087 aaKnown RBP25.95■■□□□ 1.74
ABCF3-211ENST00000475728 TRIM41Q8WV44 630 aa25.91■■□□□ 1.74
ABCF3-211ENST00000475728 KIF21AQ7Z4S6 1674 aa25.89■■□□□ 1.73
ABCF3-211ENST00000475728 FANCD2Q9BXW9 1451 aa25.86■■□□□ 1.73
ABCF3-211ENST00000475728 CEP164Q9UPV0 1460 aa25.85■■□□□ 1.73
ABCF3-211ENST00000475728 THOC2Q8NI27 1593 aaKnown RBP25.84■■□□□ 1.73
ABCF3-211ENST00000475728 MRC2Q9UBG0 1479 aa25.8■■□□□ 1.72
ABCF3-211ENST00000475728 PRDM2Q13029 1718 aa25.74■■□□□ 1.71
ABCF3-211ENST00000475728 WDR62O43379 1518 aa25.69■■□□□ 1.7
ABCF3-211ENST00000475728 URB2Q14146 1524 aaKnown RBP25.57■■□□□ 1.68
ABCF3-211ENST00000475728 ABCC8Q09428 1581 aa25.52■■□□□ 1.68
ABCF3-211ENST00000475728 TOPBP1Q92547 1522 aa25.43■■□□□ 1.66
ABCF3-211ENST00000475728 DNMBPQ6XZF7 1577 aa25.42■■□□□ 1.66
ABCF3-211ENST00000475728 IFT140Q96RY7 1462 aa25.32■■□□□ 1.64
ABCF3-211ENST00000475728 CUX1P39880 1505 aa25.22■■□□□ 1.63
ABCF3-211ENST00000475728 POLA1P09884 1462 aaPredicted RBP25.21■■□□□ 1.63
ABCF3-211ENST00000475728 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
ABCF3-211ENST00000475728 SOGA1O94964 1423 aa25.15■■□□□ 1.62
ABCF3-211ENST00000475728 WRNQ14191 1432 aaPredicted RBP eCLIP25.12■■□□□ 1.61
ABCF3-211ENST00000475728 ZNF608Q9ULD9 1512 aaPredicted RBP25.12■■□□□ 1.61
ABCF3-211ENST00000475728 TARBP1Q13395 1621 aaKnown RBP25.12■■□□□ 1.61
ABCF3-211ENST00000475728 OSCARQ8IYS5 282 aa25.1■■□□□ 1.61
ABCF3-211ENST00000475728 RAD54L2Q9Y4B4 1467 aa25.08■■□□□ 1.6
ABCF3-211ENST00000475728 EIF4G3O43432 1585 aaKnown RBP25.03■■□□□ 1.6
ABCF3-211ENST00000475728 TOP2BQ02880 1626 aa25.03■■□□□ 1.6
ABCF3-211ENST00000475728 WDR97A6NE52 1622 aa25.02■■□□□ 1.6
ABCF3-211ENST00000475728 AQRO60306 1485 aaKnown RBP eCLIP25.01■■□□□ 1.592e-8■■□□□ 14.3
ABCF3-211ENST00000475728 BIVM-ERCC5R4GMW8 1640 aa25.01■■□□□ 1.59
ABCF3-211ENST00000475728 TDRD9Q8NDG6 1382 aaKnown RBP24.98■■□□□ 1.59
ABCF3-211ENST00000475728 SYNJ1O43426 1573 aa24.97■■□□□ 1.59
ABCF3-211ENST00000475728 RIMBP3CA6NJZ7 1639 aa24.94■■□□□ 1.58
ABCF3-211ENST00000475728 RIMBP3BA6NNM3 1639 aa24.94■■□□□ 1.58
ABCF3-211ENST00000475728 RIMBP3Q9UFD9 1639 aa24.94■■□□□ 1.58
ABCF3-211ENST00000475728 ABCA10Q8WWZ4 1543 aa24.94■■□□□ 1.58
ABCF3-211ENST00000475728 GRIN2BQ13224 1484 aa24.87■■□□□ 1.57
ABCF3-211ENST00000475728 GAPVD1Q14C86 1478 aa24.85■■□□□ 1.57
ABCF3-211ENST00000475728 MAGI1Q96QZ7 1491 aaPredicted RBP24.81■■□□□ 1.56
ABCF3-211ENST00000475728 ABCA5Q8WWZ7 1642 aa24.79■■□□□ 1.56
ABCF3-211ENST00000475728 SNAPC4Q5SXM2 1469 aa24.79■■□□□ 1.56
ABCF3-211ENST00000475728 FBLN2P98095 1184 aa24.76■■□□□ 1.55
ABCF3-211ENST00000475728 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
ABCF3-211ENST00000475728 CHMP7Q8WUX9 453 aaPredicted RBP24.72■■□□□ 1.55
ABCF3-211ENST00000475728 PBRM1Q86U86 1689 aa24.72■■□□□ 1.55
ABCF3-211ENST00000475728 SYNJ2O15056 1496 aa24.7■■□□□ 1.54
ABCF3-211ENST00000475728 CHD1O14646 1710 aa24.67■■□□□ 1.54
ABCF3-211ENST00000475728 ERICH3Q5RHP9 1530 aa24.66■■□□□ 1.54
ABCF3-211ENST00000475728 TRHP20396 242 aaPredicted RBP24.63■■□□□ 1.53
ABCF3-211ENST00000475728 CYB5RLQ6IPT4 315 aa24.63■■□□□ 1.53
ABCF3-211ENST00000475728 KIF27Q86VH2 1401 aa24.62■■□□□ 1.53
ABCF3-211ENST00000475728 FHAD1B1AJZ9 1412 aa24.6■■□□□ 1.53
ABCF3-211ENST00000475728 ADAMTS12P58397 1594 aa24.57■■□□□ 1.52
ABCF3-211ENST00000475728 GRIN2AQ12879 1464 aa24.52■■□□□ 1.52
ABCF3-211ENST00000475728 IGF1RP08069 1367 aa24.48■■□□□ 1.51
ABCF3-211ENST00000475728 ARAP1Q96P48 1450 aa24.48■■□□□ 1.51
ABCF3-211ENST00000475728 CLASP1Q7Z460 1538 aa24.46■■□□□ 1.51
ABCF3-211ENST00000475728 AEBP2Q6ZN18 517 aaPredicted RBP24.46■■□□□ 1.51
ABCF3-211ENST00000475728 CUL7Q14999 1698 aa24.42■■□□□ 1.5
ABCF3-211ENST00000475728 NUP160Q12769 1436 aa24.42■■□□□ 1.5
ABCF3-211ENST00000475728 CARMIL1Q5VZK9 1371 aa24.36■■□□□ 1.49
ABCF3-211ENST00000475728 CEP170Q5SW79 1584 aa24.34■■□□□ 1.49
ABCF3-211ENST00000475728 RUSC2Q8N2Y8 1516 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms