RNA–Protein interactions for RNA: ENST00000475213.1

SSR1-205, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 3

Gene SSR1, Length 446 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-205ENST00000475213 NISCHQ9Y2I1 1504 aa30.29■■■□□ 2.44
SSR1-205ENST00000475213 AEBP2Q6ZN18 517 aaPredicted RBP29.42■■■□□ 2.3
SSR1-205ENST00000475213 CHIC1Q5VXU3 224 aa28.12■■■□□ 2.09
SSR1-205ENST00000475213 CCDC180Q9P1Z9 1646 aa27.07■■□□□ 1.92
SSR1-205ENST00000475213 ABCC9O60706 1549 aa26.77■■□□□ 1.88
SSR1-205ENST00000475213 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
SSR1-205ENST00000475213 NACADO15069 1562 aa25.52■■□□□ 1.68
SSR1-205ENST00000475213 DCAF8L2P0C7V8 631 aa25.43■■□□□ 1.66
SSR1-205ENST00000475213 MYO15BQ96JP2 1530 aa25.25■■□□□ 1.63
SSR1-205ENST00000475213 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
SSR1-205ENST00000475213 UNC13AQ9UPW8 1703 aa25.1■■□□□ 1.61
SSR1-205ENST00000475213 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
SSR1-205ENST00000475213 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
SSR1-205ENST00000475213 SENP3Q9H4L4 574 aaPredicted RBP24.94■■□□□ 1.58
SSR1-205ENST00000475213 BICRAQ9NZM4 1560 aa24.88■■□□□ 1.57
SSR1-205ENST00000475213 DNAJC5BQ9UF47 199 aa24.86■■□□□ 1.57
SSR1-205ENST00000475213 PHF23Q9BUL5 403 aaPredicted RBP24.73■■□□□ 1.55
SSR1-205ENST00000475213 SCRIBQ14160 1630 aa24.68■■□□□ 1.54
SSR1-205ENST00000475213 SHROOM4Q9ULL8 1493 aa24.54■■□□□ 1.52
SSR1-205ENST00000475213 EIF4G1Q04637 1599 aaKnown RBP24.23■■□□□ 1.47
SSR1-205ENST00000475213 CC2D2AQ9P2K1 1620 aa24.22■■□□□ 1.47
SSR1-205ENST00000475213 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
SSR1-205ENST00000475213 SMARCA4P51532 1647 aa23.58■■□□□ 1.36
SSR1-205ENST00000475213 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
SSR1-205ENST00000475213 ATAD2BQ9ULI0 1458 aa23.52■■□□□ 1.36
SSR1-205ENST00000475213 BAZ1AQ9NRL2 1556 aaPredicted RBP23.49■■□□□ 1.35
SSR1-205ENST00000475213 SMARCA2P51531 1590 aa23.47■■□□□ 1.35
SSR1-205ENST00000475213 HMGXB3Q12766 1538 aa23.4■■□□□ 1.34
SSR1-205ENST00000475213 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
SSR1-205ENST00000475213 PEG3Q9GZU2 1588 aa23.35■■□□□ 1.33
SSR1-205ENST00000475213 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
SSR1-205ENST00000475213 FOXD1Q16676 465 aa23.3■■□□□ 1.32
SSR1-205ENST00000475213 WIZO95785 1651 aa23.1■■□□□ 1.29
SSR1-205ENST00000475213 NESP48681 1621 aa23.09■■□□□ 1.29
SSR1-205ENST00000475213 ERCC6Q03468 1493 aa23.09■■□□□ 1.29
SSR1-205ENST00000475213 LAMC3Q9Y6N6 1575 aa22.97■■□□□ 1.27
SSR1-205ENST00000475213 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
SSR1-205ENST00000475213 CUX2O14529 1486 aa22.95■■□□□ 1.26
SSR1-205ENST00000475213 CADPSQ9ULU8 1353 aa22.84■■□□□ 1.25
SSR1-205ENST00000475213 KIF21AQ7Z4S6 1674 aa22.84■■□□□ 1.25
SSR1-205ENST00000475213 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
SSR1-205ENST00000475213 THOC2Q8NI27 1593 aaKnown RBP22.81■■□□□ 1.24
SSR1-205ENST00000475213 TOP2AP11388 1531 aaKnown RBP22.81■■□□□ 1.24
SSR1-205ENST00000475213 CFTRP13569 1480 aa22.65■■□□□ 1.22
SSR1-205ENST00000475213 MRC2Q9UBG0 1479 aa22.61■■□□□ 1.21
SSR1-205ENST00000475213 DNAJC5Q9H3Z4 198 aa22.61■■□□□ 1.21
SSR1-205ENST00000475213 FANCD2Q9BXW9 1451 aa22.58■■□□□ 1.2
SSR1-205ENST00000475213 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.2
SSR1-205ENST00000475213 CCDC88BA6NC98 1476 aa22.55■■□□□ 1.2
SSR1-205ENST00000475213 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
SSR1-205ENST00000475213 WDR62O43379 1518 aa22.55■■□□□ 1.2
SSR1-205ENST00000475213 PRDM2Q13029 1718 aa22.5■■□□□ 1.19
SSR1-205ENST00000475213 URB2Q14146 1524 aaKnown RBP22.39■■□□□ 1.17
SSR1-205ENST00000475213 TOPBP1Q92547 1522 aa22.19■■□□□ 1.14
SSR1-205ENST00000475213 SUPT5HO00267 1087 aaKnown RBP22.16■■□□□ 1.14
SSR1-205ENST00000475213 ABCC8Q09428 1581 aa22.16■■□□□ 1.14
SSR1-205ENST00000475213 DNMBPQ6XZF7 1577 aa22.14■■□□□ 1.13
SSR1-205ENST00000475213 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
SSR1-205ENST00000475213 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
SSR1-205ENST00000475213 PPP6R1Q9UPN7 881 aa22.04■■□□□ 1.12
SSR1-205ENST00000475213 TARBP1Q13395 1621 aaKnown RBP21.98■■□□□ 1.11
SSR1-205ENST00000475213 POLA1P09884 1462 aaPredicted RBP21.98■■□□□ 1.11
SSR1-205ENST00000475213 EIF4G3O43432 1585 aaKnown RBP21.96■■□□□ 1.11
SSR1-205ENST00000475213 ADRA2BP18089 450 aa21.95■■□□□ 1.1
SSR1-205ENST00000475213 OSCARQ8IYS5 282 aa21.95■■□□□ 1.1
SSR1-205ENST00000475213 CUX1P39880 1505 aa21.92■■□□□ 1.1
SSR1-205ENST00000475213 RAD54L2Q9Y4B4 1467 aa21.9■■□□□ 1.1
SSR1-205ENST00000475213 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.1
SSR1-205ENST00000475213 FGD5Q6ZNL6 1462 aa21.89■■□□□ 1.09
SSR1-205ENST00000475213 SOGA1O94964 1423 aa21.89■■□□□ 1.09
SSR1-205ENST00000475213 TDRD9Q8NDG6 1382 aaKnown RBP21.8■■□□□ 1.08
SSR1-205ENST00000475213 WDR97A6NE52 1622 aa21.77■■□□□ 1.08
SSR1-205ENST00000475213 PIAS4Q8N2W9 510 aaPredicted RBP21.77■■□□□ 1.08
SSR1-205ENST00000475213 CHD1O14646 1710 aa21.77■■□□□ 1.08
SSR1-205ENST00000475213 TRIM41Q8WV44 630 aa21.74■■□□□ 1.07
SSR1-205ENST00000475213 FBLN2P98095 1184 aa21.68■■□□□ 1.06
SSR1-205ENST00000475213 SNAPC4Q5SXM2 1469 aa21.68■■□□□ 1.06
SSR1-205ENST00000475213 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
SSR1-205ENST00000475213 ABCA10Q8WWZ4 1543 aa21.66■■□□□ 1.06
SSR1-205ENST00000475213 RIMBP3CA6NJZ7 1639 aa21.66■■□□□ 1.06
SSR1-205ENST00000475213 RIMBP3BA6NNM3 1639 aa21.66■■□□□ 1.06
SSR1-205ENST00000475213 RIMBP3Q9UFD9 1639 aa21.66■■□□□ 1.06
SSR1-205ENST00000475213 GRIN2BQ13224 1484 aa21.65■■□□□ 1.06
SSR1-205ENST00000475213 WRNQ14191 1432 aaPredicted RBP eCLIP21.65■■□□□ 1.06
SSR1-205ENST00000475213 TOP2BQ02880 1626 aa21.65■■□□□ 1.06
SSR1-205ENST00000475213 SYNJ1O43426 1573 aa21.64■■□□□ 1.05
SSR1-205ENST00000475213 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
SSR1-205ENST00000475213 GAPVD1Q14C86 1478 aa21.63■■□□□ 1.05
SSR1-205ENST00000475213 MAGI1Q96QZ7 1491 aaPredicted RBP21.63■■□□□ 1.05
SSR1-205ENST00000475213 MSH5O43196 834 aa21.61■■□□□ 1.05
SSR1-205ENST00000475213 ABCA5Q8WWZ7 1642 aa21.61■■□□□ 1.05
SSR1-205ENST00000475213 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
SSR1-205ENST00000475213 CHMP7Q8WUX9 453 aaPredicted RBP21.57■■□□□ 1.04
SSR1-205ENST00000475213 SYNJ2O15056 1496 aa21.55■■□□□ 1.04
SSR1-205ENST00000475213 CLASP1Q7Z460 1538 aa21.5■■□□□ 1.03
SSR1-205ENST00000475213 ADAMTS12P58397 1594 aa21.42■■□□□ 1.02
SSR1-205ENST00000475213 CYB5RLQ6IPT4 315 aa21.42■■□□□ 1.02
SSR1-205ENST00000475213 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
SSR1-205ENST00000475213 ERICH3Q5RHP9 1530 aa21.39■■□□□ 1.02
SSR1-205ENST00000475213 GRIN2AQ12879 1464 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms