RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, humanhuman

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-208ENST00000474319 NISCHQ9Y2I1 1504 aa21.41■■□□□ 1.02
LSS-208ENST00000474319 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
LSS-208ENST00000474319 SHROOM4Q9ULL8 1493 aa18.97■□□□□ 0.63
LSS-208ENST00000474319 SUPT5HO00267 1087 aaKnown RBP18.74■□□□□ 0.59
LSS-208ENST00000474319 ABCC9O60706 1549 aa18.14■□□□□ 0.49
LSS-208ENST00000474319 CCDC180Q9P1Z9 1646 aa18.03■□□□□ 0.48
LSS-208ENST00000474319 PCGF6Q9BYE7 350 aa17.96■□□□□ 0.47
LSS-208ENST00000474319 ZCCHC6Q5VYS8 1495 aaKnown RBP17.89■□□□□ 0.45
LSS-208ENST00000474319 CHIC1Q5VXU3 224 aa17.85■□□□□ 0.45
LSS-208ENST00000474319 PPARGC1BQ86YN6 1023 aaKnown RBP17.82■□□□□ 0.44
LSS-208ENST00000474319 MYO15BQ96JP2 1530 aa17.79■□□□□ 0.44
LSS-208ENST00000474319 LOC105371045A0A1W2PR82 267 aa17.74■□□□□ 0.43
LSS-208ENST00000474319 EHMT2Q96KQ7 1210 aa17.72■□□□□ 0.43
LSS-208ENST00000474319 HRCP23327 699 aa17.71■□□□□ 0.43
LSS-208ENST00000474319 PABPN1Q86U42 306 aaKnown RBP eCLIP17.53■□□□□ 0.41e-7■□□□□ 8.7
LSS-208ENST00000474319 FAM9AQ8IZU1 332 aaPredicted RBP17.48■□□□□ 0.39
LSS-208ENST00000474319 SCRIBQ14160 1630 aa17.48■□□□□ 0.39
LSS-208ENST00000474319 DCAF1Q9Y4B6 1507 aa17.16■□□□□ 0.34
LSS-208ENST00000474319 TRIM41Q8WV44 630 aa17.14■□□□□ 0.33
LSS-208ENST00000474319 TTBK1Q5TCY1 1321 aaPredicted RBP17.13■□□□□ 0.33
LSS-208ENST00000474319 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
LSS-208ENST00000474319 NACADO15069 1562 aa17.06■□□□□ 0.32
LSS-208ENST00000474319 RB1CC1Q8TDY2 1594 aa17.03■□□□□ 0.32
LSS-208ENST00000474319 CECR2Q9BXF3 1484 aa17.02■□□□□ 0.31
LSS-208ENST00000474319 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
LSS-208ENST00000474319 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.82■□□□□ 0.28
LSS-208ENST00000474319 MROH2BQ7Z745 1585 aa16.76■□□□□ 0.27
LSS-208ENST00000474319 CCER1Q8TC90 406 aaPredicted RBP16.71■□□□□ 0.27
LSS-208ENST00000474319 ZEB1P37275 1124 aaPredicted RBP16.67■□□□□ 0.26
LSS-208ENST00000474319 SCAF1Q9H7N4 1312 aaKnown RBP16.67■□□□□ 0.26
LSS-208ENST00000474319 WIZO95785 1651 aa16.6■□□□□ 0.25
LSS-208ENST00000474319 RANGAP1P46060 587 aaPredicted RBP16.57■□□□□ 0.24
LSS-208ENST00000474319 YTHDC1Q96MU7 727 aaKnown RBP16.48■□□□□ 0.23
LSS-208ENST00000474319 BAZ1AQ9NRL2 1556 aaPredicted RBP16.48■□□□□ 0.23
LSS-208ENST00000474319 UNC13AQ9UPW8 1703 aa16.47■□□□□ 0.23
LSS-208ENST00000474319 BICRAQ9NZM4 1560 aa16.46■□□□□ 0.23
LSS-208ENST00000474319 UBTFP17480 764 aaKnown RBP16.45■□□□□ 0.22
LSS-208ENST00000474319 NEUROD1Q13562 356 aa16.43■□□□□ 0.22
LSS-208ENST00000474319 DIEXFQ68CQ4 756 aaKnown RBP16.38■□□□□ 0.21
LSS-208ENST00000474319 SMARCA4P51532 1647 aa16.36■□□□□ 0.21
LSS-208ENST00000474319 HNRNPUL2Q1KMD3 747 aaKnown RBP16.36■□□□□ 0.21
LSS-208ENST00000474319 GTF3C3Q9Y5Q9 886 aa16.34■□□□□ 0.21
LSS-208ENST00000474319 CCDC88BA6NC98 1476 aa16.33■□□□□ 0.2
LSS-208ENST00000474319 BAZ1BQ9UIG0 1483 aaKnown RBP16.3■□□□□ 0.2
LSS-208ENST00000474319 ACIN1Q9UKV3 1341 aaKnown RBP16.29■□□□□ 0.2
LSS-208ENST00000474319 DNAJC5BQ9UF47 199 aa16.25■□□□□ 0.19
LSS-208ENST00000474319 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
LSS-208ENST00000474319 ABCC8Q09428 1581 aa16.24■□□□□ 0.19
LSS-208ENST00000474319 SOGA1O94964 1423 aa16.19■□□□□ 0.18
LSS-208ENST00000474319 CENPBP07199 599 aaPredicted RBP16.19■□□□□ 0.18
LSS-208ENST00000474319 TOP2AP11388 1531 aaKnown RBP16.17■□□□□ 0.18
LSS-208ENST00000474319 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
LSS-208ENST00000474319 EIF4G1Q04637 1599 aaKnown RBP16.12■□□□□ 0.17
LSS-208ENST00000474319 CSRNP3Q8WYN3 585 aa16.12■□□□□ 0.17
LSS-208ENST00000474319 CEP162Q5TB80 1403 aa16.12■□□□□ 0.17
LSS-208ENST00000474319 RUSC2Q8N2Y8 1516 aa16.11■□□□□ 0.17
LSS-208ENST00000474319 SMARCA2P51531 1590 aa16.1■□□□□ 0.17
LSS-208ENST00000474319 MIER1Q8N108 512 aa16.06■□□□□ 0.16
LSS-208ENST00000474319 ZNF316A6NFI3 1004 aaPredicted RBP16.05■□□□□ 0.16
LSS-208ENST00000474319 APLP2Q06481 763 aa16.05■□□□□ 0.16
LSS-208ENST00000474319 WRNQ14191 1432 aaPredicted RBP eCLIP16.01■□□□□ 0.154e-8■■■□□ 14.6
LSS-208ENST00000474319 ITGAEP38570 1179 aa16.01■□□□□ 0.15
LSS-208ENST00000474319 ATP1B4Q9UN42 357 aaPredicted RBP15.93■□□□□ 0.14
LSS-208ENST00000474319 CC2D2AQ9P2K1 1620 aa15.92■□□□□ 0.14
LSS-208ENST00000474319 NCAPD3P42695 1498 aa15.9■□□□□ 0.14
LSS-208ENST00000474319 TNIKQ9UKE5 1360 aa15.89■□□□□ 0.13
LSS-208ENST00000474319 NESP48681 1621 aa15.86■□□□□ 0.13
LSS-208ENST00000474319 P3H3Q8IVL6 736 aa15.84■□□□□ 0.13
LSS-208ENST00000474319 CADPSQ9ULU8 1353 aa15.8■□□□□ 0.12
LSS-208ENST00000474319 CLIP1P30622 1438 aa15.79■□□□□ 0.12
LSS-208ENST00000474319 GOLGA3Q08378 1498 aa15.77■□□□□ 0.12
LSS-208ENST00000474319 PEG3Q9GZU2 1588 aa15.76■□□□□ 0.11
LSS-208ENST00000474319 SYNJ1O43426 1573 aa15.74■□□□□ 0.11
LSS-208ENST00000474319 FBLN2P98095 1184 aa15.72■□□□□ 0.11
LSS-208ENST00000474319 KANK4Q5T7N3 995 aaPredicted RBP15.72■□□□□ 0.11
LSS-208ENST00000474319 BCANQ96GW7 911 aa15.7■□□□□ 0.1
LSS-208ENST00000474319 RAPGEF2Q9Y4G8 1499 aa15.69■□□□□ 0.1
LSS-208ENST00000474319 ARID3CA6NKF2 412 aa15.68■□□□□ 0.1
LSS-208ENST00000474319 HMGXB3Q12766 1538 aa15.68■□□□□ 0.1
LSS-208ENST00000474319 MYT1Q01538 1121 aa15.67■□□□□ 0.1
LSS-208ENST00000474319 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
LSS-208ENST00000474319 CFTRP13569 1480 aa15.65■□□□□ 0.1
LSS-208ENST00000474319 FANCD2Q9BXW9 1451 aa15.65■□□□□ 0.1
LSS-208ENST00000474319 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
LSS-208ENST00000474319 KCNH8Q96L42 1107 aa15.65■□□□□ 0.1
LSS-208ENST00000474319 CUX2O14529 1486 aa15.65■□□□□ 0.1
LSS-208ENST00000474319 EEA1Q15075 1411 aa15.62■□□□□ 0.09
LSS-208ENST00000474319 CEP164Q9UPV0 1460 aa15.61■□□□□ 0.09
LSS-208ENST00000474319 RAD54L2Q9Y4B4 1467 aa15.61■□□□□ 0.09
LSS-208ENST00000474319 VPS8Q8N3P4 1428 aa15.59■□□□□ 0.09
LSS-208ENST00000474319 CUX1P39880 1505 aa15.59■□□□□ 0.09
LSS-208ENST00000474319 KIF27Q86VH2 1401 aa15.57■□□□□ 0.08
LSS-208ENST00000474319 FAM50AQ14320 339 aaKnown RBP15.56■□□□□ 0.08
LSS-208ENST00000474319 FGD5Q6ZNL6 1462 aa15.54■□□□□ 0.08
LSS-208ENST00000474319 ERCC6Q03468 1493 aa15.53■□□□□ 0.08
LSS-208ENST00000474319 DDX10Q13206 875 aaKnown RBP15.51■□□□□ 0.07
LSS-208ENST00000474319 SUPT16HQ9Y5B9 1047 aaKnown RBP15.51■□□□□ 0.07
LSS-208ENST00000474319 SIN3AQ96ST3 1273 aa15.5■□□□□ 0.07
LSS-208ENST00000474319 PDS5BQ9NTI5 1447 aa15.49■□□□□ 0.07
LSS-208ENST00000474319 DHX57Q6P158 1386 aaKnown RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms