RNA–Protein interactions for RNA: ENST00000473720.5

SMPD4-217, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 555 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-217ENST00000473720 NISCHQ9Y2I1 1504 aa29.7■■■□□ 2.34
SMPD4-217ENST00000473720 CCDC180Q9P1Z9 1646 aa26.67■■□□□ 1.86
SMPD4-217ENST00000473720 ABCC9O60706 1549 aa26.56■■□□□ 1.84
SMPD4-217ENST00000473720 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
SMPD4-217ENST00000473720 DCAF8L2P0C7V8 631 aa25.16■■□□□ 1.62
SMPD4-217ENST00000473720 NACADO15069 1562 aa25.11■■□□□ 1.61
SMPD4-217ENST00000473720 UNC13AQ9UPW8 1703 aa24.93■■□□□ 1.58
SMPD4-217ENST00000473720 PABPN1Q86U42 306 aaKnown RBP eCLIP24.73■■□□□ 1.55
SMPD4-217ENST00000473720 DNAJC5BQ9UF47 199 aa24.73■■□□□ 1.55
SMPD4-217ENST00000473720 MYO15BQ96JP2 1530 aa24.7■■□□□ 1.54
SMPD4-217ENST00000473720 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
SMPD4-217ENST00000473720 BICRAQ9NZM4 1560 aa24.55■■□□□ 1.52
SMPD4-217ENST00000473720 DCAF1Q9Y4B6 1507 aa24.46■■□□□ 1.51
SMPD4-217ENST00000473720 SCRIBQ14160 1630 aa24.38■■□□□ 1.49
SMPD4-217ENST00000473720 SHROOM4Q9ULL8 1493 aa24.09■■□□□ 1.45
SMPD4-217ENST00000473720 CC2D2AQ9P2K1 1620 aa24.01■■□□□ 1.43
SMPD4-217ENST00000473720 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
SMPD4-217ENST00000473720 CECR2Q9BXF3 1484 aa23.86■■□□□ 1.41
SMPD4-217ENST00000473720 SMARCA4P51532 1647 aa23.2■■□□□ 1.3
SMPD4-217ENST00000473720 NCAPD3P42695 1498 aa23.11■■□□□ 1.29
SMPD4-217ENST00000473720 ATAD2BQ9ULI0 1458 aa23.11■■□□□ 1.29
SMPD4-217ENST00000473720 SMARCA2P51531 1590 aa23.09■■□□□ 1.29
SMPD4-217ENST00000473720 BAZ1AQ9NRL2 1556 aaPredicted RBP23.06■■□□□ 1.28
SMPD4-217ENST00000473720 HMGXB3Q12766 1538 aa23.02■■□□□ 1.28
SMPD4-217ENST00000473720 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
SMPD4-217ENST00000473720 ERCC6Q03468 1493 aa22.93■■□□□ 1.26
SMPD4-217ENST00000473720 MROH2BQ7Z745 1585 aa22.93■■□□□ 1.26
SMPD4-217ENST00000473720 PEG3Q9GZU2 1588 aa22.89■■□□□ 1.25
SMPD4-217ENST00000473720 NESP48681 1621 aa22.86■■□□□ 1.25
SMPD4-217ENST00000473720 WIZO95785 1651 aa22.76■■□□□ 1.23
SMPD4-217ENST00000473720 CUX2O14529 1486 aa22.75■■□□□ 1.23
SMPD4-217ENST00000473720 KIF21AQ7Z4S6 1674 aa22.68■■□□□ 1.22
SMPD4-217ENST00000473720 LAMC3Q9Y6N6 1575 aa22.67■■□□□ 1.22
SMPD4-217ENST00000473720 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
SMPD4-217ENST00000473720 DNAJC5Q9H3Z4 198 aa22.58■■□□□ 1.21
SMPD4-217ENST00000473720 PDS5BQ9NTI5 1447 aa22.49■■□□□ 1.19
SMPD4-217ENST00000473720 CADPSQ9ULU8 1353 aa22.45■■□□□ 1.18
SMPD4-217ENST00000473720 RSF1Q96T23 1441 aaPredicted RBP22.43■■□□□ 1.18
SMPD4-217ENST00000473720 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
SMPD4-217ENST00000473720 MRC2Q9UBG0 1479 aa22.32■■□□□ 1.16
SMPD4-217ENST00000473720 CEP164Q9UPV0 1460 aa22.28■■□□□ 1.16
SMPD4-217ENST00000473720 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
SMPD4-217ENST00000473720 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
SMPD4-217ENST00000473720 WDR62O43379 1518 aa22.25■■□□□ 1.15
SMPD4-217ENST00000473720 CFTRP13569 1480 aa22.22■■□□□ 1.15
SMPD4-217ENST00000473720 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
SMPD4-217ENST00000473720 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
SMPD4-217ENST00000473720 TOPBP1Q92547 1522 aa21.85■■□□□ 1.09
SMPD4-217ENST00000473720 DNMBPQ6XZF7 1577 aa21.8■■□□□ 1.08
SMPD4-217ENST00000473720 TRIM41Q8WV44 630 aa21.8■■□□□ 1.08
SMPD4-217ENST00000473720 ZNF608Q9ULD9 1512 aaPredicted RBP21.79■■□□□ 1.08
SMPD4-217ENST00000473720 IFT140Q96RY7 1462 aa21.78■■□□□ 1.08
SMPD4-217ENST00000473720 ABCC8Q09428 1581 aa21.76■■□□□ 1.07
SMPD4-217ENST00000473720 OSCARQ8IYS5 282 aa21.75■■□□□ 1.07
SMPD4-217ENST00000473720 EIF4G3O43432 1585 aaKnown RBP21.73■■□□□ 1.07
SMPD4-217ENST00000473720 TARBP1Q13395 1621 aaKnown RBP21.67■■□□□ 1.06
SMPD4-217ENST00000473720 SUPT5HO00267 1087 aaKnown RBP21.67■■□□□ 1.06
SMPD4-217ENST00000473720 CHD1O14646 1710 aa21.65■■□□□ 1.06
SMPD4-217ENST00000473720 POLA1P09884 1462 aaPredicted RBP21.62■■□□□ 1.05
SMPD4-217ENST00000473720 AQRO60306 1485 aaKnown RBP eCLIP21.6■■□□□ 1.057e-7■■■■□ 20.2
SMPD4-217ENST00000473720 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.04
SMPD4-217ENST00000473720 RIMBP3CA6NJZ7 1639 aa21.56■■□□□ 1.04
SMPD4-217ENST00000473720 RIMBP3BA6NNM3 1639 aa21.56■■□□□ 1.04
SMPD4-217ENST00000473720 RIMBP3Q9UFD9 1639 aa21.56■■□□□ 1.04
SMPD4-217ENST00000473720 CUX1P39880 1505 aa21.54■■□□□ 1.04
SMPD4-217ENST00000473720 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
SMPD4-217ENST00000473720 SOGA1O94964 1423 aa21.53■■□□□ 1.04
SMPD4-217ENST00000473720 FBLN2P98095 1184 aa21.5■■□□□ 1.03
SMPD4-217ENST00000473720 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
SMPD4-217ENST00000473720 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
SMPD4-217ENST00000473720 WDR97A6NE52 1622 aa21.44■■□□□ 1.02
SMPD4-217ENST00000473720 PBRM1Q86U86 1689 aa21.42■■□□□ 1.02
SMPD4-217ENST00000473720 SNAPC4Q5SXM2 1469 aa21.4■■□□□ 1.02
SMPD4-217ENST00000473720 GRIN2BQ13224 1484 aa21.31■■□□□ 1
SMPD4-217ENST00000473720 CHMP7Q8WUX9 453 aaPredicted RBP21.3■■□□□ 1
SMPD4-217ENST00000473720 MAGI1Q96QZ7 1491 aaPredicted RBP21.29■■□□□ 1
SMPD4-217ENST00000473720 CYB5RLQ6IPT4 315 aa21.29■■□□□ 1
SMPD4-217ENST00000473720 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
SMPD4-217ENST00000473720 SYNJ1O43426 1573 aa21.27■■□□□ 1
SMPD4-217ENST00000473720 ABCA5Q8WWZ7 1642 aa21.26■□□□□ 0.99
SMPD4-217ENST00000473720 BIVM-ERCC5R4GMW8 1640 aa21.26■□□□□ 0.99
SMPD4-217ENST00000473720 ABCA10Q8WWZ4 1543 aa21.24■□□□□ 0.99
SMPD4-217ENST00000473720 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
SMPD4-217ENST00000473720 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
SMPD4-217ENST00000473720 CLASP1Q7Z460 1538 aa21.23■□□□□ 0.99
SMPD4-217ENST00000473720 ARAP1Q96P48 1450 aa21.22■□□□□ 0.99
SMPD4-217ENST00000473720 WRNQ14191 1432 aaPredicted RBP eCLIP21.2■□□□□ 0.985e-6■■■■■ 34.5
SMPD4-217ENST00000473720 ADAMTS12P58397 1594 aa21.1■□□□□ 0.97
SMPD4-217ENST00000473720 TRHP20396 242 aaPredicted RBP21.07■□□□□ 0.96
SMPD4-217ENST00000473720 GRIN2AQ12879 1464 aa21.06■□□□□ 0.96
SMPD4-217ENST00000473720 CEP170Q5SW79 1584 aa21.02■□□□□ 0.96
SMPD4-217ENST00000473720 ERICH3Q5RHP9 1530 aa20.99■□□□□ 0.95
SMPD4-217ENST00000473720 ERCC6L2Q5T890 1561 aa20.97■□□□□ 0.95
SMPD4-217ENST00000473720 FHAD1B1AJZ9 1412 aa20.97■□□□□ 0.95
SMPD4-217ENST00000473720 NUP160Q12769 1436 aa20.93■□□□□ 0.94
SMPD4-217ENST00000473720 SHROOM2Q13796 1616 aa20.89■□□□□ 0.94
SMPD4-217ENST00000473720 RUSC2Q8N2Y8 1516 aa20.8■□□□□ 0.92
SMPD4-217ENST00000473720 CUL7Q14999 1698 aa20.8■□□□□ 0.92
SMPD4-217ENST00000473720 PRG4Q92954 1404 aaPredicted RBP20.78■□□□□ 0.92
SMPD4-217ENST00000473720 KIF27Q86VH2 1401 aa20.77■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 203.7 ms