RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NISCHQ9Y2I1 1504 aa47.08■■■■■ 5.13
CCDC88B-206ENST00000473405 CCDC180Q9P1Z9 1646 aa42.24■■■■■ 4.35
CCDC88B-206ENST00000473405 ABCC9O60706 1549 aa41.85■■■■■ 4.29
CCDC88B-206ENST00000473405 RB1CC1Q8TDY2 1594 aa39.99■■■■□ 3.99
CCDC88B-206ENST00000473405 NACADO15069 1562 aa39.78■■■■□ 3.96
CCDC88B-206ENST00000473405 DCAF8L2P0C7V8 631 aa39.4■■■■□ 3.9
CCDC88B-206ENST00000473405 MYO15BQ96JP2 1530 aa39.35■■■■□ 3.89
CCDC88B-206ENST00000473405 UNC13AQ9UPW8 1703 aa39.24■■■■□ 3.87
CCDC88B-206ENST00000473405 ZCCHC6Q5VYS8 1495 aaKnown RBP39.11■■■■□ 3.85
CCDC88B-206ENST00000473405 DNAJC5BQ9UF47 199 aa39■■■■□ 3.83
CCDC88B-206ENST00000473405 DCAF1Q9Y4B6 1507 aa38.93■■■■□ 3.82
CCDC88B-206ENST00000473405 PABPN1Q86U42 306 aaKnown RBP eCLIP38.92■■■■□ 3.82
CCDC88B-206ENST00000473405 BICRAQ9NZM4 1560 aa38.89■■■■□ 3.82
CCDC88B-206ENST00000473405 SCRIBQ14160 1630 aa38.45■■■■□ 3.75
CCDC88B-206ENST00000473405 SHROOM4Q9ULL8 1493 aa38.35■■■■□ 3.73
CCDC88B-206ENST00000473405 CC2D2AQ9P2K1 1620 aa37.89■■■■□ 3.66
CCDC88B-206ENST00000473405 EIF4G1Q04637 1599 aaKnown RBP37.88■■■■□ 3.65
CCDC88B-206ENST00000473405 CECR2Q9BXF3 1484 aa37.67■■■■□ 3.62
CCDC88B-206ENST00000473405 SMARCA4P51532 1647 aa36.72■■■■□ 3.47
CCDC88B-206ENST00000473405 NCAPD3P42695 1498 aa36.69■■■■□ 3.46
CCDC88B-206ENST00000473405 ATAD2BQ9ULI0 1458 aa36.62■■■■□ 3.45
CCDC88B-206ENST00000473405 SMARCA2P51531 1590 aa36.55■■■■□ 3.44
CCDC88B-206ENST00000473405 BAZ1AQ9NRL2 1556 aaPredicted RBP36.53■■■■□ 3.44
CCDC88B-206ENST00000473405 HMGXB3Q12766 1538 aa36.51■■■■□ 3.44
CCDC88B-206ENST00000473405 PEG3Q9GZU2 1588 aa36.38■■■■□ 3.41
CCDC88B-206ENST00000473405 MROH2BQ7Z745 1585 aa36.28■■■■□ 3.4
CCDC88B-206ENST00000473405 BAZ1BQ9UIG0 1483 aaKnown RBP36.28■■■■□ 3.4
CCDC88B-206ENST00000473405 ERCC6Q03468 1493 aa36.09■■■■□ 3.37
CCDC88B-206ENST00000473405 NESP48681 1621 aa36.06■■■■□ 3.36
CCDC88B-206ENST00000473405 CUX2O14529 1486 aa35.99■■■■□ 3.35
CCDC88B-206ENST00000473405 WIZO95785 1651 aa35.9■■■■□ 3.34
CCDC88B-206ENST00000473405 LAMC3Q9Y6N6 1575 aa35.87■■■■□ 3.33
CCDC88B-206ENST00000473405 THOC2Q8NI27 1593 aaKnown RBP35.74■■■■□ 3.31
CCDC88B-206ENST00000473405 KIF21AQ7Z4S6 1674 aa35.7■■■■□ 3.31
CCDC88B-206ENST00000473405 RSF1Q96T23 1441 aaPredicted RBP35.58■■■■□ 3.29
CCDC88B-206ENST00000473405 DNAJC5Q9H3Z4 198 aa35.58■■■■□ 3.29
CCDC88B-206ENST00000473405 PDS5BQ9NTI5 1447 aa35.57■■■■□ 3.28
CCDC88B-206ENST00000473405 CADPSQ9ULU8 1353 aa35.54■■■■□ 3.28
CCDC88B-206ENST00000473405 TOP2AP11388 1531 aaKnown RBP35.44■■■■□ 3.26
CCDC88B-206ENST00000473405 MRC2Q9UBG0 1479 aa35.3■■■■□ 3.24
CCDC88B-206ENST00000473405 WDR62O43379 1518 aa35.27■■■■□ 3.24
CCDC88B-206ENST00000473405 CFTRP13569 1480 aa35.25■■■■□ 3.23
CCDC88B-206ENST00000473405 CEP164Q9UPV0 1460 aa35.21■■■■□ 3.23
CCDC88B-206ENST00000473405 FANCD2Q9BXW9 1451 aa35.18■■■■□ 3.22
CCDC88B-206ENST00000473405 PRDM2Q13029 1718 aa35.07■■■■□ 3.2
CCDC88B-206ENST00000473405 CCDC88BA6NC98 1476 aa34.99■■■■□ 3.19
CCDC88B-206ENST00000473405 URB2Q14146 1524 aaKnown RBP34.91■■■■□ 3.18
CCDC88B-206ENST00000473405 TOPBP1Q92547 1522 aa34.57■■■■□ 3.12
CCDC88B-206ENST00000473405 DNMBPQ6XZF7 1577 aa34.49■■■■□ 3.11
CCDC88B-206ENST00000473405 IFT140Q96RY7 1462 aa34.47■■■■□ 3.11
CCDC88B-206ENST00000473405 ABCC8Q09428 1581 aa34.45■■■■□ 3.11
CCDC88B-206ENST00000473405 ZNF608Q9ULD9 1512 aaPredicted RBP34.43■■■■□ 3.1
CCDC88B-206ENST00000473405 EIF4G3O43432 1585 aaKnown RBP34.32■■■■□ 3.09
CCDC88B-206ENST00000473405 TARBP1Q13395 1621 aaKnown RBP34.31■■■■□ 3.08
CCDC88B-206ENST00000473405 OSCARQ8IYS5 282 aa34.25■■■■□ 3.07
CCDC88B-206ENST00000473405 POLA1P09884 1462 aaPredicted RBP34.24■■■■□ 3.07
CCDC88B-206ENST00000473405 AQRO60306 1485 aaKnown RBP eCLIP34.1■■■■□ 3.05
CCDC88B-206ENST00000473405 CUX1P39880 1505 aa34.09■■■■□ 3.05
CCDC88B-206ENST00000473405 TRIM41Q8WV44 630 aa34.08■■■■□ 3.05
CCDC88B-206ENST00000473405 RAD54L2Q9Y4B4 1467 aa34.07■■■■□ 3.05
CCDC88B-206ENST00000473405 SUPT5HO00267 1087 aaKnown RBP34.05■■■■□ 3.04
CCDC88B-206ENST00000473405 FGD5Q6ZNL6 1462 aa34.05■■■■□ 3.04
CCDC88B-206ENST00000473405 CHD1O14646 1710 aa34.04■■■■□ 3.04
CCDC88B-206ENST00000473405 SOGA1O94964 1423 aa34.01■■■■□ 3.03
CCDC88B-206ENST00000473405 WDR97A6NE52 1622 aa33.97■■■■□ 3.03
CCDC88B-206ENST00000473405 RIMBP3CA6NJZ7 1639 aa33.97■■■■□ 3.03
CCDC88B-206ENST00000473405 RIMBP3BA6NNM3 1639 aa33.97■■■■□ 3.03
CCDC88B-206ENST00000473405 RIMBP3Q9UFD9 1639 aa33.97■■■■□ 3.03
CCDC88B-206ENST00000473405 TDRD9Q8NDG6 1382 aaKnown RBP33.9■■■■□ 3.02
CCDC88B-206ENST00000473405 ARHGEF11O15085 1522 aa33.85■■■■□ 3.01
CCDC88B-206ENST00000473405 SNAPC4Q5SXM2 1469 aa33.8■■■■□ 3
CCDC88B-206ENST00000473405 PBRM1Q86U86 1689 aa33.74■■■□□ 2.99
CCDC88B-206ENST00000473405 GRIN2BQ13224 1484 aa33.72■■■□□ 2.99
CCDC88B-206ENST00000473405 MAGI1Q96QZ7 1491 aaPredicted RBP33.72■■■□□ 2.99
CCDC88B-206ENST00000473405 FBLN2P98095 1184 aa33.71■■■□□ 2.99
CCDC88B-206ENST00000473405 ABCA5Q8WWZ7 1642 aa33.69■■■□□ 2.98
CCDC88B-206ENST00000473405 ABCA10Q8WWZ4 1543 aa33.69■■■□□ 2.98
CCDC88B-206ENST00000473405 BIVM-ERCC5R4GMW8 1640 aa33.67■■■□□ 2.98
CCDC88B-206ENST00000473405 GAPVD1Q14C86 1478 aa33.63■■■□□ 2.97
CCDC88B-206ENST00000473405 TOP2BQ02880 1626 aa33.63■■■□□ 2.97
CCDC88B-206ENST00000473405 CLASP1Q7Z460 1538 aa33.63■■■□□ 2.97
CCDC88B-206ENST00000473405 SYNJ1O43426 1573 aa33.61■■■□□ 2.97
CCDC88B-206ENST00000473405 SYNJ2O15056 1496 aa33.6■■■□□ 2.97
CCDC88B-206ENST00000473405 WRNQ14191 1432 aaPredicted RBP eCLIP33.54■■■□□ 2.96
CCDC88B-206ENST00000473405 ARAP1Q96P48 1450 aa33.54■■■□□ 2.96
CCDC88B-206ENST00000473405 CHMP7Q8WUX9 453 aaPredicted RBP33.52■■■□□ 2.96
CCDC88B-206ENST00000473405 CYB5RLQ6IPT4 315 aa33.44■■■□□ 2.94
CCDC88B-206ENST00000473405 ADAMTS12P58397 1594 aa33.4■■■□□ 2.94
CCDC88B-206ENST00000473405 GRIN2AQ12879 1464 aa33.31■■■□□ 2.92
CCDC88B-206ENST00000473405 ERICH3Q5RHP9 1530 aa33.28■■■□□ 2.92
CCDC88B-206ENST00000473405 CEP170Q5SW79 1584 aa33.24■■■□□ 2.91
CCDC88B-206ENST00000473405 FHAD1B1AJZ9 1412 aa33.21■■■□□ 2.91
CCDC88B-206ENST00000473405 NUP160Q12769 1436 aa33.19■■■□□ 2.9
CCDC88B-206ENST00000473405 ERCC6L2Q5T890 1561 aa33.12■■■□□ 2.89
CCDC88B-206ENST00000473405 SHROOM2Q13796 1616 aa33.1■■■□□ 2.89
CCDC88B-206ENST00000473405 TRHP20396 242 aaPredicted RBP32.95■■■□□ 2.87
CCDC88B-206ENST00000473405 RUSC2Q8N2Y8 1516 aa32.94■■■□□ 2.86
CCDC88B-206ENST00000473405 CUL7Q14999 1698 aa32.88■■■□□ 2.85
CCDC88B-206ENST00000473405 KIF27Q86VH2 1401 aa32.87■■■□□ 2.85
CCDC88B-206ENST00000473405 IGF1RP08069 1367 aa32.83■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms