RNA–Protein interactions for RNA: ENST00000472896.5

APTX-216, Transcript of aprataxin, humanhuman

TSL 1 (best)

Gene APTX, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-216ENST00000472896 NISCHQ9Y2I1 1504 aa22.87■■□□□ 1.25
APTX-216ENST00000472896 ABCC9O60706 1549 aa21.1■□□□□ 0.97
APTX-216ENST00000472896 CCDC180Q9P1Z9 1646 aa20.58■□□□□ 0.89
APTX-216ENST00000472896 DNAJC5BQ9UF47 199 aa20.26■□□□□ 0.83
APTX-216ENST00000472896 RB1CC1Q8TDY2 1594 aa19.82■□□□□ 0.76
APTX-216ENST00000472896 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
APTX-216ENST00000472896 NACADO15069 1562 aa19.6■□□□□ 0.73
APTX-216ENST00000472896 DCAF8L2P0C7V8 631 aa19.57■□□□□ 0.72
APTX-216ENST00000472896 AEBP2Q6ZN18 517 aaPredicted RBP19.57■□□□□ 0.72
APTX-216ENST00000472896 UNC13AQ9UPW8 1703 aa19.39■□□□□ 0.7
APTX-216ENST00000472896 BICRAQ9NZM4 1560 aa19.33■□□□□ 0.69
APTX-216ENST00000472896 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
APTX-216ENST00000472896 CECR2Q9BXF3 1484 aa19.01■□□□□ 0.63
APTX-216ENST00000472896 CC2D2AQ9P2K1 1620 aa19■□□□□ 0.63
APTX-216ENST00000472896 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.62
APTX-216ENST00000472896 EIF4G1Q04637 1599 aaKnown RBP18.85■□□□□ 0.61
APTX-216ENST00000472896 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
APTX-216ENST00000472896 SCRIBQ14160 1630 aa18.81■□□□□ 0.6
APTX-216ENST00000472896 DCAF1Q9Y4B6 1507 aa18.81■□□□□ 0.6
APTX-216ENST00000472896 DNAJC5Q9H3Z4 198 aa18.81■□□□□ 0.6
APTX-216ENST00000472896 CUX2O14529 1486 aa18.26■□□□□ 0.51
APTX-216ENST00000472896 CHIC1Q5VXU3 224 aa18.25■□□□□ 0.51
APTX-216ENST00000472896 ERCC6Q03468 1493 aa18.18■□□□□ 0.5
APTX-216ENST00000472896 NCAPD3P42695 1498 aa18.15■□□□□ 0.5
APTX-216ENST00000472896 ATAD2BQ9ULI0 1458 aa18.05■□□□□ 0.48
APTX-216ENST00000472896 NESP48681 1621 aa18.04■□□□□ 0.48
APTX-216ENST00000472896 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
APTX-216ENST00000472896 SMARCA2P51531 1590 aa17.91■□□□□ 0.46
APTX-216ENST00000472896 SMARCA4P51532 1647 aa17.89■□□□□ 0.45
APTX-216ENST00000472896 THOC2Q8NI27 1593 aaKnown RBP17.84■□□□□ 0.45
APTX-216ENST00000472896 TRIM41Q8WV44 630 aa17.82■□□□□ 0.44
APTX-216ENST00000472896 BAZ1BQ9UIG0 1483 aaKnown RBP17.81■□□□□ 0.44
APTX-216ENST00000472896 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
APTX-216ENST00000472896 BAZ1AQ9NRL2 1556 aaPredicted RBP17.72■□□□□ 0.43
APTX-216ENST00000472896 KIF21AQ7Z4S6 1674 aa17.7■□□□□ 0.42
APTX-216ENST00000472896 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
APTX-216ENST00000472896 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
APTX-216ENST00000472896 MROH2BQ7Z745 1585 aa17.65■□□□□ 0.42
APTX-216ENST00000472896 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
APTX-216ENST00000472896 MRC2Q9UBG0 1479 aa17.55■□□□□ 0.4
APTX-216ENST00000472896 WDR62O43379 1518 aa17.51■□□□□ 0.39
APTX-216ENST00000472896 OSCARQ8IYS5 282 aa17.45■□□□□ 0.38
APTX-216ENST00000472896 WIZO95785 1651 aa17.4■□□□□ 0.38
APTX-216ENST00000472896 CEP164Q9UPV0 1460 aa17.4■□□□□ 0.38
APTX-216ENST00000472896 FANCD2Q9BXW9 1451 aa17.37■□□□□ 0.37
APTX-216ENST00000472896 CFTRP13569 1480 aa17.29■□□□□ 0.36
APTX-216ENST00000472896 URB2Q14146 1524 aaKnown RBP17.28■□□□□ 0.36
APTX-216ENST00000472896 RIMBP3CA6NJZ7 1639 aa17.21■□□□□ 0.35
APTX-216ENST00000472896 RIMBP3BA6NNM3 1639 aa17.21■□□□□ 0.35
APTX-216ENST00000472896 RIMBP3Q9UFD9 1639 aa17.21■□□□□ 0.35
APTX-216ENST00000472896 RSF1Q96T23 1441 aaPredicted RBP17.15■□□□□ 0.34
APTX-216ENST00000472896 ZNF608Q9ULD9 1512 aaPredicted RBP17.15■□□□□ 0.34
APTX-216ENST00000472896 ARHGEF11O15085 1522 aa17.12■□□□□ 0.33
APTX-216ENST00000472896 TOP2AP11388 1531 aaKnown RBP17.1■□□□□ 0.33
APTX-216ENST00000472896 CYB5RLQ6IPT4 315 aa17.1■□□□□ 0.33
APTX-216ENST00000472896 IFT140Q96RY7 1462 aa17.08■□□□□ 0.32
APTX-216ENST00000472896 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
APTX-216ENST00000472896 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
APTX-216ENST00000472896 CCDC88BA6NC98 1476 aa16.99■□□□□ 0.31
APTX-216ENST00000472896 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
APTX-216ENST00000472896 AQRO60306 1485 aaKnown RBP eCLIP16.96■□□□□ 0.31
APTX-216ENST00000472896 ARAP1Q96P48 1450 aa16.95■□□□□ 0.3
APTX-216ENST00000472896 EIF4G3O43432 1585 aaKnown RBP16.94■□□□□ 0.3
APTX-216ENST00000472896 FBLN2P98095 1184 aa16.92■□□□□ 0.3
APTX-216ENST00000472896 CHD1O14646 1710 aa16.9■□□□□ 0.3
APTX-216ENST00000472896 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
APTX-216ENST00000472896 TARBP1Q13395 1621 aaKnown RBP16.87■□□□□ 0.29
APTX-216ENST00000472896 DNMBPQ6XZF7 1577 aa16.87■□□□□ 0.29
APTX-216ENST00000472896 HRCP23327 699 aa16.84■□□□□ 0.29
APTX-216ENST00000472896 RAD54L2Q9Y4B4 1467 aa16.81■□□□□ 0.28
APTX-216ENST00000472896 POLA1P09884 1462 aaPredicted RBP16.8■□□□□ 0.28
APTX-216ENST00000472896 TDRD9Q8NDG6 1382 aaKnown RBP16.8■□□□□ 0.28
APTX-216ENST00000472896 PELP1Q8IZL8 1130 aaKnown RBP16.79■□□□□ 0.28
APTX-216ENST00000472896 SOGA1O94964 1423 aa16.76■□□□□ 0.27
APTX-216ENST00000472896 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
APTX-216ENST00000472896 SNAPC4Q5SXM2 1469 aa16.72■□□□□ 0.27
APTX-216ENST00000472896 CLASP1Q7Z460 1538 aa16.72■□□□□ 0.27
APTX-216ENST00000472896 CHMP7Q8WUX9 453 aaPredicted RBP16.72■□□□□ 0.27
APTX-216ENST00000472896 FGD5Q6ZNL6 1462 aa16.65■□□□□ 0.26
APTX-216ENST00000472896 SYNJ1O43426 1573 aa16.63■□□□□ 0.25
APTX-216ENST00000472896 MAGI1Q96QZ7 1491 aaPredicted RBP16.62■□□□□ 0.25
APTX-216ENST00000472896 GRIN2BQ13224 1484 aa16.61■□□□□ 0.25
APTX-216ENST00000472896 CUX1P39880 1505 aa16.59■□□□□ 0.25
APTX-216ENST00000472896 SYNJ2O15056 1496 aa16.58■□□□□ 0.25
APTX-216ENST00000472896 GAPVD1Q14C86 1478 aa16.58■□□□□ 0.25
APTX-216ENST00000472896 WDR97A6NE52 1622 aa16.58■□□□□ 0.24
APTX-216ENST00000472896 ERCC6L2Q5T890 1561 aa16.5■□□□□ 0.23
APTX-216ENST00000472896 PBRM1Q86U86 1689 aa16.47■□□□□ 0.23
APTX-216ENST00000472896 PHF23Q9BUL5 403 aaPredicted RBP16.46■□□□□ 0.22
APTX-216ENST00000472896 ABCA10Q8WWZ4 1543 aa16.43■□□□□ 0.22
APTX-216ENST00000472896 ABCA5Q8WWZ7 1642 aa16.41■□□□□ 0.22
APTX-216ENST00000472896 GRIN2AQ12879 1464 aa16.39■□□□□ 0.21
APTX-216ENST00000472896 CEP170Q5SW79 1584 aa16.39■□□□□ 0.21
APTX-216ENST00000472896 NUP160Q12769 1436 aa16.37■□□□□ 0.21
APTX-216ENST00000472896 MYT1Q01538 1121 aa16.32■□□□□ 0.2
APTX-216ENST00000472896 ADAMTS12P58397 1594 aa16.31■□□□□ 0.2
APTX-216ENST00000472896 SHROOM2Q13796 1616 aa16.3■□□□□ 0.2
APTX-216ENST00000472896 KIF13AQ9H1H9 1805 aa16.3■□□□□ 0.2
APTX-216ENST00000472896 WRNQ14191 1432 aaPredicted RBP eCLIP16.29■□□□□ 0.2
APTX-216ENST00000472896 FHAD1B1AJZ9 1412 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms