RNA–Protein interactions for RNA: ENST00000472892.1

VTI1A-203, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 1 (best)

Gene VTI1A, Length 1,247 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-203ENST00000472892 NISCHQ9Y2I1 1504 aa38.02■■■■□ 3.68
VTI1A-203ENST00000472892 CCDC180Q9P1Z9 1646 aa33.96■■■■□ 3.03
VTI1A-203ENST00000472892 ABCC9O60706 1549 aa33.8■■■■□ 3
VTI1A-203ENST00000472892 RB1CC1Q8TDY2 1594 aa32.26■■■□□ 2.75
VTI1A-203ENST00000472892 NACADO15069 1562 aa32.11■■■□□ 2.73
VTI1A-203ENST00000472892 DCAF8L2P0C7V8 631 aa32.03■■■□□ 2.72
VTI1A-203ENST00000472892 MYO15BQ96JP2 1530 aa31.78■■■□□ 2.68
VTI1A-203ENST00000472892 DNAJC5BQ9UF47 199 aa31.62■■■□□ 2.65
VTI1A-203ENST00000472892 PABPN1Q86U42 306 aaKnown RBP eCLIP31.55■■■□□ 2.64
VTI1A-203ENST00000472892 ZCCHC6Q5VYS8 1495 aaKnown RBP31.53■■■□□ 2.64
VTI1A-203ENST00000472892 UNC13AQ9UPW8 1703 aa31.46■■■□□ 2.63
VTI1A-203ENST00000472892 AEBP2Q6ZN18 517 aaPredicted RBP31.45■■■□□ 2.63
VTI1A-203ENST00000472892 DCAF1Q9Y4B6 1507 aa31.44■■■□□ 2.62
VTI1A-203ENST00000472892 BICRAQ9NZM4 1560 aa31.32■■■□□ 2.6
VTI1A-203ENST00000472892 SHROOM4Q9ULL8 1493 aa30.95■■■□□ 2.54
VTI1A-203ENST00000472892 SCRIBQ14160 1630 aa30.95■■■□□ 2.54
VTI1A-203ENST00000472892 CC2D2AQ9P2K1 1620 aa30.54■■■□□ 2.48
VTI1A-203ENST00000472892 EIF4G1Q04637 1599 aaKnown RBP30.53■■■□□ 2.48
VTI1A-203ENST00000472892 CECR2Q9BXF3 1484 aa30.44■■■□□ 2.46
VTI1A-203ENST00000472892 CHIC1Q5VXU3 224 aa30.02■■■□□ 2.4
VTI1A-203ENST00000472892 NCAPD3P42695 1498 aa29.69■■■□□ 2.34
VTI1A-203ENST00000472892 ATAD2BQ9ULI0 1458 aa29.61■■■□□ 2.33
VTI1A-203ENST00000472892 SMARCA4P51532 1647 aa29.57■■■□□ 2.32
VTI1A-203ENST00000472892 SMARCA2P51531 1590 aa29.5■■■□□ 2.31
VTI1A-203ENST00000472892 BAZ1AQ9NRL2 1556 aaPredicted RBP29.48■■■□□ 2.31
VTI1A-203ENST00000472892 HMGXB3Q12766 1538 aa29.43■■■□□ 2.3
VTI1A-203ENST00000472892 PEG3Q9GZU2 1588 aa29.32■■■□□ 2.28
VTI1A-203ENST00000472892 BAZ1BQ9UIG0 1483 aaKnown RBP29.29■■■□□ 2.28
VTI1A-203ENST00000472892 MROH2BQ7Z745 1585 aa29.28■■■□□ 2.28
VTI1A-203ENST00000472892 ERCC6Q03468 1493 aa29.16■■■□□ 2.26
VTI1A-203ENST00000472892 NESP48681 1621 aa29.1■■■□□ 2.25
VTI1A-203ENST00000472892 CUX2O14529 1486 aa29.07■■■□□ 2.24
VTI1A-203ENST00000472892 LAMC3Q9Y6N6 1575 aa28.92■■■□□ 2.22
VTI1A-203ENST00000472892 WIZO95785 1651 aa28.91■■■□□ 2.22
VTI1A-203ENST00000472892 DNAJC5Q9H3Z4 198 aa28.9■■■□□ 2.22
VTI1A-203ENST00000472892 CADPSQ9ULU8 1353 aa28.8■■■□□ 2.2
VTI1A-203ENST00000472892 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
VTI1A-203ENST00000472892 RSF1Q96T23 1441 aaPredicted RBP28.78■■■□□ 2.2
VTI1A-203ENST00000472892 THOC2Q8NI27 1593 aaKnown RBP28.73■■■□□ 2.19
VTI1A-203ENST00000472892 KIF21AQ7Z4S6 1674 aa28.67■■■□□ 2.18
VTI1A-203ENST00000472892 TOP2AP11388 1531 aaKnown RBP28.58■■■□□ 2.17
VTI1A-203ENST00000472892 MRC2Q9UBG0 1479 aa28.5■■■□□ 2.15
VTI1A-203ENST00000472892 CFTRP13569 1480 aa28.49■■■□□ 2.15
VTI1A-203ENST00000472892 FANCD2Q9BXW9 1451 aa28.42■■■□□ 2.14
VTI1A-203ENST00000472892 WDR62O43379 1518 aa28.42■■■□□ 2.14
VTI1A-203ENST00000472892 CEP164Q9UPV0 1460 aa28.41■■■□□ 2.14
VTI1A-203ENST00000472892 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
VTI1A-203ENST00000472892 URB2Q14146 1524 aaKnown RBP28.18■■■□□ 2.1
VTI1A-203ENST00000472892 PRDM2Q13029 1718 aa28.1■■■□□ 2.09
VTI1A-203ENST00000472892 TOPBP1Q92547 1522 aa27.91■■■□□ 2.06
VTI1A-203ENST00000472892 ABCC8Q09428 1581 aa27.9■■■□□ 2.06
VTI1A-203ENST00000472892 IFT140Q96RY7 1462 aa27.87■■■□□ 2.05
VTI1A-203ENST00000472892 OSCARQ8IYS5 282 aa27.84■■■□□ 2.05
VTI1A-203ENST00000472892 ZNF608Q9ULD9 1512 aaPredicted RBP27.8■■■□□ 2.04
VTI1A-203ENST00000472892 DNMBPQ6XZF7 1577 aa27.8■■■□□ 2.04
VTI1A-203ENST00000472892 SUPT5HO00267 1087 aaKnown RBP27.65■■■□□ 2.02
VTI1A-203ENST00000472892 TRIM41Q8WV44 630 aa27.64■■■□□ 2.02
VTI1A-203ENST00000472892 POLA1P09884 1462 aaPredicted RBP27.64■■■□□ 2.01
VTI1A-203ENST00000472892 TARBP1Q13395 1621 aaKnown RBP27.63■■■□□ 2.01
VTI1A-203ENST00000472892 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
VTI1A-203ENST00000472892 AQRO60306 1485 aaKnown RBP eCLIP27.59■■■□□ 2.01
VTI1A-203ENST00000472892 SOGA1O94964 1423 aa27.55■■■□□ 2
VTI1A-203ENST00000472892 RAD54L2Q9Y4B4 1467 aa27.54■■■□□ 2
VTI1A-203ENST00000472892 CUX1P39880 1505 aa27.49■■□□□ 1.99
VTI1A-203ENST00000472892 FGD5Q6ZNL6 1462 aa27.48■■□□□ 1.99
VTI1A-203ENST00000472892 TDRD9Q8NDG6 1382 aaKnown RBP27.47■■□□□ 1.99
VTI1A-203ENST00000472892 FBLN2P98095 1184 aa27.37■■□□□ 1.97
VTI1A-203ENST00000472892 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
VTI1A-203ENST00000472892 RIMBP3CA6NJZ7 1639 aa27.34■■□□□ 1.97
VTI1A-203ENST00000472892 RIMBP3BA6NNM3 1639 aa27.34■■□□□ 1.97
VTI1A-203ENST00000472892 RIMBP3Q9UFD9 1639 aa27.34■■□□□ 1.97
VTI1A-203ENST00000472892 CHD1O14646 1710 aa27.33■■□□□ 1.97
VTI1A-203ENST00000472892 ARHGEF11O15085 1522 aa27.31■■□□□ 1.96
VTI1A-203ENST00000472892 SNAPC4Q5SXM2 1469 aa27.27■■□□□ 1.96
VTI1A-203ENST00000472892 GRIN2BQ13224 1484 aa27.26■■□□□ 1.95
VTI1A-203ENST00000472892 MAGI1Q96QZ7 1491 aaPredicted RBP27.24■■□□□ 1.95
VTI1A-203ENST00000472892 CHMP7Q8WUX9 453 aaPredicted RBP27.22■■□□□ 1.95
VTI1A-203ENST00000472892 ABCA10Q8WWZ4 1543 aa27.21■■□□□ 1.95
VTI1A-203ENST00000472892 GAPVD1Q14C86 1478 aa27.19■■□□□ 1.94
VTI1A-203ENST00000472892 CYB5RLQ6IPT4 315 aa27.16■■□□□ 1.94
VTI1A-203ENST00000472892 WRNQ14191 1432 aaPredicted RBP eCLIP27.15■■□□□ 1.94
VTI1A-203ENST00000472892 SYNJ2O15056 1496 aa27.14■■□□□ 1.94
VTI1A-203ENST00000472892 TOP2BQ02880 1626 aa27.1■■□□□ 1.93
VTI1A-203ENST00000472892 ABCA5Q8WWZ7 1642 aa27.1■■□□□ 1.93
VTI1A-203ENST00000472892 CLASP1Q7Z460 1538 aa27.09■■□□□ 1.93
VTI1A-203ENST00000472892 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
VTI1A-203ENST00000472892 PBRM1Q86U86 1689 aa27.08■■□□□ 1.92
VTI1A-203ENST00000472892 SYNJ1O43426 1573 aa27.07■■□□□ 1.92
VTI1A-203ENST00000472892 ARAP1Q96P48 1450 aa27.06■■□□□ 1.92
VTI1A-203ENST00000472892 GRIN2AQ12879 1464 aa26.9■■□□□ 1.9
VTI1A-203ENST00000472892 ADAMTS12P58397 1594 aa26.88■■□□□ 1.89
VTI1A-203ENST00000472892 FHAD1B1AJZ9 1412 aa26.87■■□□□ 1.89
VTI1A-203ENST00000472892 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
VTI1A-203ENST00000472892 SENP3Q9H4L4 574 aaPredicted RBP26.83■■□□□ 1.89
VTI1A-203ENST00000472892 NUP160Q12769 1436 aa26.82■■□□□ 1.88
VTI1A-203ENST00000472892 CEP170Q5SW79 1584 aa26.77■■□□□ 1.88
VTI1A-203ENST00000472892 TRHP20396 242 aaPredicted RBP26.76■■□□□ 1.87
VTI1A-203ENST00000472892 ERCC6L2Q5T890 1561 aa26.67■■□□□ 1.86
VTI1A-203ENST00000472892 SHROOM2Q13796 1616 aa26.65■■□□□ 1.86
VTI1A-203ENST00000472892 IGF1RP08069 1367 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms