RNA–Protein interactions for RNA: ENST00000471744.1

SNX13-205, Transcript of sorting nexin 13, humanhuman

TSL 4

Gene SNX13, Length 454 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-205ENST00000471744 NISCHQ9Y2I1 1504 aa36.36■■■■□ 3.41
SNX13-205ENST00000471744 CCDC180Q9P1Z9 1646 aa32.33■■■□□ 2.77
SNX13-205ENST00000471744 ABCC9O60706 1549 aa31.33■■■□□ 2.61
SNX13-205ENST00000471744 NACADO15069 1562 aa30.33■■■□□ 2.45
SNX13-205ENST00000471744 ZCCHC6Q5VYS8 1495 aaKnown RBP30.33■■■□□ 2.45
SNX13-205ENST00000471744 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.44
SNX13-205ENST00000471744 MYO15BQ96JP2 1530 aa30.24■■■□□ 2.43
SNX13-205ENST00000471744 DCAF8L2P0C7V8 631 aa30.23■■■□□ 2.43
SNX13-205ENST00000471744 DCAF1Q9Y4B6 1507 aa30.16■■■□□ 2.42
SNX13-205ENST00000471744 UNC13AQ9UPW8 1703 aa29.62■■■□□ 2.33
SNX13-205ENST00000471744 SCRIBQ14160 1630 aa29.42■■■□□ 2.3
SNX13-205ENST00000471744 BICRAQ9NZM4 1560 aa29.32■■■□□ 2.28
SNX13-205ENST00000471744 PABPN1Q86U42 306 aaKnown RBP eCLIP29.26■■■□□ 2.27
SNX13-205ENST00000471744 SHROOM4Q9ULL8 1493 aa29.17■■■□□ 2.26
SNX13-205ENST00000471744 AEBP2Q6ZN18 517 aaPredicted RBP28.84■■■□□ 2.21
SNX13-205ENST00000471744 EIF4G1Q04637 1599 aaKnown RBP28.56■■■□□ 2.16
SNX13-205ENST00000471744 DNAJC5BQ9UF47 199 aa28.51■■■□□ 2.15
SNX13-205ENST00000471744 CC2D2AQ9P2K1 1620 aa28.4■■■□□ 2.14
SNX13-205ENST00000471744 CECR2Q9BXF3 1484 aa28.24■■■□□ 2.11
SNX13-205ENST00000471744 BAZ1AQ9NRL2 1556 aaPredicted RBP28.21■■■□□ 2.11
SNX13-205ENST00000471744 SMARCA4P51532 1647 aa28.19■■■□□ 2.1
SNX13-205ENST00000471744 SMARCA2P51531 1590 aa28.01■■■□□ 2.07
SNX13-205ENST00000471744 MROH2BQ7Z745 1585 aa27.99■■■□□ 2.07
SNX13-205ENST00000471744 ATAD2BQ9ULI0 1458 aa27.97■■■□□ 2.07
SNX13-205ENST00000471744 NCAPD3P42695 1498 aa27.95■■■□□ 2.06
SNX13-205ENST00000471744 PEG3Q9GZU2 1588 aa27.94■■■□□ 2.06
SNX13-205ENST00000471744 CHIC1Q5VXU3 224 aa27.9■■■□□ 2.06
SNX13-205ENST00000471744 HMGXB3Q12766 1538 aa27.87■■■□□ 2.05
SNX13-205ENST00000471744 BAZ1BQ9UIG0 1483 aaKnown RBP27.77■■■□□ 2.04
SNX13-205ENST00000471744 RSF1Q96T23 1441 aaPredicted RBP27.74■■■□□ 2.03
SNX13-205ENST00000471744 WIZO95785 1651 aa27.71■■■□□ 2.03
SNX13-205ENST00000471744 TOP2AP11388 1531 aaKnown RBP27.47■■□□□ 1.99
SNX13-205ENST00000471744 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
SNX13-205ENST00000471744 NESP48681 1621 aa27.15■■□□□ 1.94
SNX13-205ENST00000471744 CADPSQ9ULU8 1353 aa27.13■■□□□ 1.93
SNX13-205ENST00000471744 SUPT5HO00267 1087 aaKnown RBP27.13■■□□□ 1.93
SNX13-205ENST00000471744 CCDC88BA6NC98 1476 aa27.1■■□□□ 1.93
SNX13-205ENST00000471744 ERCC6Q03468 1493 aa27.05■■□□□ 1.92
SNX13-205ENST00000471744 PDS5BQ9NTI5 1447 aa27.02■■□□□ 1.92
SNX13-205ENST00000471744 CFTRP13569 1480 aa27.01■■□□□ 1.91
SNX13-205ENST00000471744 PRDM2Q13029 1718 aa26.93■■□□□ 1.9
SNX13-205ENST00000471744 KIF21AQ7Z4S6 1674 aa26.9■■□□□ 1.9
SNX13-205ENST00000471744 FANCD2Q9BXW9 1451 aa26.81■■□□□ 1.88
SNX13-205ENST00000471744 CEP164Q9UPV0 1460 aa26.79■■□□□ 1.88
SNX13-205ENST00000471744 THOC2Q8NI27 1593 aaKnown RBP26.77■■□□□ 1.88
SNX13-205ENST00000471744 CUX2O14529 1486 aa26.74■■□□□ 1.87
SNX13-205ENST00000471744 MRC2Q9UBG0 1479 aa26.71■■□□□ 1.87
SNX13-205ENST00000471744 WDR62O43379 1518 aa26.62■■□□□ 1.85
SNX13-205ENST00000471744 URB2Q14146 1524 aaKnown RBP26.51■■□□□ 1.83
SNX13-205ENST00000471744 ABCC8Q09428 1581 aa26.5■■□□□ 1.83
SNX13-205ENST00000471744 DNMBPQ6XZF7 1577 aa26.42■■□□□ 1.82
SNX13-205ENST00000471744 TOPBP1Q92547 1522 aa26.41■■□□□ 1.82
SNX13-205ENST00000471744 CUX1P39880 1505 aa26.26■■□□□ 1.79
SNX13-205ENST00000471744 IFT140Q96RY7 1462 aa26.23■■□□□ 1.79
SNX13-205ENST00000471744 POLA1P09884 1462 aaPredicted RBP26.19■■□□□ 1.78
SNX13-205ENST00000471744 WRNQ14191 1432 aaPredicted RBP eCLIP26.18■■□□□ 1.78
SNX13-205ENST00000471744 FGD5Q6ZNL6 1462 aa26.16■■□□□ 1.78
SNX13-205ENST00000471744 BIVM-ERCC5R4GMW8 1640 aa26.14■■□□□ 1.77
SNX13-205ENST00000471744 TOP2BQ02880 1626 aa26.13■■□□□ 1.77
SNX13-205ENST00000471744 TARBP1Q13395 1621 aaKnown RBP26.11■■□□□ 1.77
SNX13-205ENST00000471744 SOGA1O94964 1423 aa26.09■■□□□ 1.77
SNX13-205ENST00000471744 SYNJ1O43426 1573 aa26.07■■□□□ 1.76
SNX13-205ENST00000471744 RAD54L2Q9Y4B4 1467 aa26.04■■□□□ 1.76
SNX13-205ENST00000471744 ZNF608Q9ULD9 1512 aaPredicted RBP26.02■■□□□ 1.76
SNX13-205ENST00000471744 WDR97A6NE52 1622 aa26.02■■□□□ 1.76
SNX13-205ENST00000471744 EIF4G3O43432 1585 aaKnown RBP25.98■■□□□ 1.75
SNX13-205ENST00000471744 ABCA10Q8WWZ4 1543 aa25.94■■□□□ 1.74
SNX13-205ENST00000471744 AQRO60306 1485 aaKnown RBP eCLIP25.9■■□□□ 1.74
SNX13-205ENST00000471744 TDRD9Q8NDG6 1382 aaKnown RBP25.88■■□□□ 1.73
SNX13-205ENST00000471744 DNAJC5Q9H3Z4 198 aa25.86■■□□□ 1.73
SNX13-205ENST00000471744 ABCA5Q8WWZ7 1642 aa25.82■■□□□ 1.72
SNX13-205ENST00000471744 GAPVD1Q14C86 1478 aa25.8■■□□□ 1.72
SNX13-205ENST00000471744 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
SNX13-205ENST00000471744 PBRM1Q86U86 1689 aa25.77■■□□□ 1.72
SNX13-205ENST00000471744 MAGI1Q96QZ7 1491 aaPredicted RBP25.72■■□□□ 1.71
SNX13-205ENST00000471744 SNAPC4Q5SXM2 1469 aa25.69■■□□□ 1.7
SNX13-205ENST00000471744 TRIM41Q8WV44 630 aa25.67■■□□□ 1.7
SNX13-205ENST00000471744 ERICH3Q5RHP9 1530 aa25.66■■□□□ 1.7
SNX13-205ENST00000471744 KIF27Q86VH2 1401 aa25.64■■□□□ 1.7
SNX13-205ENST00000471744 CHD1O14646 1710 aa25.64■■□□□ 1.7
SNX13-205ENST00000471744 OSCARQ8IYS5 282 aa25.62■■□□□ 1.69
SNX13-205ENST00000471744 SYNJ2O15056 1496 aa25.6■■□□□ 1.69
SNX13-205ENST00000471744 FBLN2P98095 1184 aa25.56■■□□□ 1.68
SNX13-205ENST00000471744 CHMP7Q8WUX9 453 aaPredicted RBP25.56■■□□□ 1.68
SNX13-205ENST00000471744 ADAMTS12P58397 1594 aa25.56■■□□□ 1.68
SNX13-205ENST00000471744 FHAD1B1AJZ9 1412 aa25.53■■□□□ 1.68
SNX13-205ENST00000471744 CUL7Q14999 1698 aa25.48■■□□□ 1.67
SNX13-205ENST00000471744 IGF1RP08069 1367 aa25.46■■□□□ 1.67
SNX13-205ENST00000471744 GRIN2AQ12879 1464 aa25.45■■□□□ 1.66
SNX13-205ENST00000471744 RUSC2Q8N2Y8 1516 aa25.36■■□□□ 1.65
SNX13-205ENST00000471744 CARMIL1Q5VZK9 1371 aa25.34■■□□□ 1.65
SNX13-205ENST00000471744 CLASP1Q7Z460 1538 aa25.34■■□□□ 1.65
SNX13-205ENST00000471744 NUP160Q12769 1436 aa25.33■■□□□ 1.65
SNX13-205ENST00000471744 EEA1Q15075 1411 aa25.32■■□□□ 1.64
SNX13-205ENST00000471744 CEP170Q5SW79 1584 aa25.29■■□□□ 1.64
SNX13-205ENST00000471744 RAPGEF2Q9Y4G8 1499 aa25.23■■□□□ 1.63
SNX13-205ENST00000471744 ARHGEF11O15085 1522 aa25.19■■□□□ 1.62
SNX13-205ENST00000471744 CSRNP3Q8WYN3 585 aa25.18■■□□□ 1.62
SNX13-205ENST00000471744 RIMBP3CA6NJZ7 1639 aa25.18■■□□□ 1.62
SNX13-205ENST00000471744 RIMBP3BA6NNM3 1639 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms