RNA–Protein interactions for RNA: ENST00000471235.1

HDAC7-220, Transcript of histone deacetylase 7, humanhuman

TSL 2

Gene HDAC7, Length 1,012 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-220ENST00000471235 NISCHQ9Y2I1 1504 aa48.02■■■■■ 5.28
HDAC7-220ENST00000471235 CCDC180Q9P1Z9 1646 aa42.79■■■■■ 4.44
HDAC7-220ENST00000471235 ABCC9O60706 1549 aa41.52■■■■■ 4.24
HDAC7-220ENST00000471235 RB1CC1Q8TDY2 1594 aa40.08■■■■■ 4.01
HDAC7-220ENST00000471235 ZCCHC6Q5VYS8 1495 aaKnown RBP40.07■■■■■ 4.01
HDAC7-220ENST00000471235 NACADO15069 1562 aa40.05■■■■■ 4
HDAC7-220ENST00000471235 MYO15BQ96JP2 1530 aa39.85■■■■□ 3.97
HDAC7-220ENST00000471235 DCAF8L2P0C7V8 631 aa39.81■■■■□ 3.96
HDAC7-220ENST00000471235 DCAF1Q9Y4B6 1507 aa39.75■■■■□ 3.95
HDAC7-220ENST00000471235 UNC13AQ9UPW8 1703 aa39.4■■■■□ 3.9
HDAC7-220ENST00000471235 SCRIBQ14160 1630 aa38.99■■■■□ 3.83
HDAC7-220ENST00000471235 BICRAQ9NZM4 1560 aa38.91■■■■□ 3.82
HDAC7-220ENST00000471235 PABPN1Q86U42 306 aaKnown RBP eCLIP38.7■■■■□ 3.79
HDAC7-220ENST00000471235 SHROOM4Q9ULL8 1493 aa38.46■■■■□ 3.75
HDAC7-220ENST00000471235 DNAJC5BQ9UF47 199 aa37.85■■■■□ 3.65
HDAC7-220ENST00000471235 EIF4G1Q04637 1599 aaKnown RBP37.83■■■■□ 3.65
HDAC7-220ENST00000471235 CC2D2AQ9P2K1 1620 aa37.65■■■■□ 3.62
HDAC7-220ENST00000471235 CECR2Q9BXF3 1484 aa37.37■■■■□ 3.57
HDAC7-220ENST00000471235 SMARCA4P51532 1647 aa37.31■■■■□ 3.56
HDAC7-220ENST00000471235 BAZ1AQ9NRL2 1556 aaPredicted RBP37.22■■■■□ 3.55
HDAC7-220ENST00000471235 MROH2BQ7Z745 1585 aa37.02■■■■□ 3.52
HDAC7-220ENST00000471235 SMARCA2P51531 1590 aa36.95■■■■□ 3.51
HDAC7-220ENST00000471235 ATAD2BQ9ULI0 1458 aa36.94■■■■□ 3.5
HDAC7-220ENST00000471235 PEG3Q9GZU2 1588 aa36.92■■■■□ 3.5
HDAC7-220ENST00000471235 NCAPD3P42695 1498 aa36.87■■■■□ 3.49
HDAC7-220ENST00000471235 HMGXB3Q12766 1538 aa36.82■■■■□ 3.48
HDAC7-220ENST00000471235 WIZO95785 1651 aa36.71■■■■□ 3.47
HDAC7-220ENST00000471235 BAZ1BQ9UIG0 1483 aaKnown RBP36.68■■■■□ 3.46
HDAC7-220ENST00000471235 RSF1Q96T23 1441 aaPredicted RBP36.59■■■■□ 3.45
HDAC7-220ENST00000471235 TOP2AP11388 1531 aaKnown RBP36.29■■■■□ 3.4
HDAC7-220ENST00000471235 NESP48681 1621 aa36.01■■■■□ 3.35
HDAC7-220ENST00000471235 LAMC3Q9Y6N6 1575 aa35.98■■■■□ 3.35
HDAC7-220ENST00000471235 CCDC88BA6NC98 1476 aa35.78■■■■□ 3.32
HDAC7-220ENST00000471235 CADPSQ9ULU8 1353 aa35.76■■■■□ 3.32
HDAC7-220ENST00000471235 KIF21AQ7Z4S6 1674 aa35.75■■■■□ 3.31
HDAC7-220ENST00000471235 ERCC6Q03468 1493 aa35.75■■■■□ 3.31
HDAC7-220ENST00000471235 PRDM2Q13029 1718 aa35.71■■■■□ 3.31
HDAC7-220ENST00000471235 SUPT5HO00267 1087 aaKnown RBP35.66■■■■□ 3.3
HDAC7-220ENST00000471235 CFTRP13569 1480 aa35.65■■■■□ 3.3
HDAC7-220ENST00000471235 PDS5BQ9NTI5 1447 aa35.59■■■■□ 3.29
HDAC7-220ENST00000471235 THOC2Q8NI27 1593 aaKnown RBP35.55■■■■□ 3.28
HDAC7-220ENST00000471235 FANCD2Q9BXW9 1451 aa35.43■■■■□ 3.26
HDAC7-220ENST00000471235 CEP164Q9UPV0 1460 aa35.4■■■■□ 3.26
HDAC7-220ENST00000471235 CUX2O14529 1486 aa35.35■■■■□ 3.25
HDAC7-220ENST00000471235 MRC2Q9UBG0 1479 aa35.31■■■■□ 3.24
HDAC7-220ENST00000471235 WDR62O43379 1518 aa35.24■■■■□ 3.23
HDAC7-220ENST00000471235 URB2Q14146 1524 aaKnown RBP35.11■■■■□ 3.21
HDAC7-220ENST00000471235 DNMBPQ6XZF7 1577 aa34.94■■■■□ 3.18
HDAC7-220ENST00000471235 TOPBP1Q92547 1522 aa34.92■■■■□ 3.18
HDAC7-220ENST00000471235 ABCC8Q09428 1581 aa34.87■■■■□ 3.17
HDAC7-220ENST00000471235 CUX1P39880 1505 aa34.74■■■■□ 3.15
HDAC7-220ENST00000471235 POLA1P09884 1462 aaPredicted RBP34.62■■■■□ 3.13
HDAC7-220ENST00000471235 IFT140Q96RY7 1462 aa34.62■■■■□ 3.13
HDAC7-220ENST00000471235 TARBP1Q13395 1621 aaKnown RBP34.59■■■■□ 3.13
HDAC7-220ENST00000471235 BIVM-ERCC5R4GMW8 1640 aa34.58■■■■□ 3.13
HDAC7-220ENST00000471235 FGD5Q6ZNL6 1462 aa34.58■■■■□ 3.13
HDAC7-220ENST00000471235 SYNJ1O43426 1573 aa34.53■■■■□ 3.12
HDAC7-220ENST00000471235 TOP2BQ02880 1626 aa34.51■■■■□ 3.11
HDAC7-220ENST00000471235 WRNQ14191 1432 aaPredicted RBP eCLIP34.49■■■■□ 3.11
HDAC7-220ENST00000471235 ZNF608Q9ULD9 1512 aaPredicted RBP34.47■■■■□ 3.11
HDAC7-220ENST00000471235 WDR97A6NE52 1622 aa34.47■■■■□ 3.11
HDAC7-220ENST00000471235 EIF4G3O43432 1585 aaKnown RBP34.46■■■■□ 3.11
HDAC7-220ENST00000471235 RAD54L2Q9Y4B4 1467 aa34.44■■■■□ 3.1
HDAC7-220ENST00000471235 SOGA1O94964 1423 aa34.38■■■■□ 3.09
HDAC7-220ENST00000471235 AQRO60306 1485 aaKnown RBP eCLIP34.24■■■■□ 3.071e-6■■■□□ 17.9
HDAC7-220ENST00000471235 ABCA10Q8WWZ4 1543 aa34.23■■■■□ 3.07
HDAC7-220ENST00000471235 ABCA5Q8WWZ7 1642 aa34.2■■■■□ 3.07
HDAC7-220ENST00000471235 PBRM1Q86U86 1689 aa34.2■■■■□ 3.07
HDAC7-220ENST00000471235 TDRD9Q8NDG6 1382 aaKnown RBP34.17■■■■□ 3.06
HDAC7-220ENST00000471235 CHD1O14646 1710 aa34.07■■■■□ 3.05
HDAC7-220ENST00000471235 GAPVD1Q14C86 1478 aa34.05■■■■□ 3.04
HDAC7-220ENST00000471235 GRIN2BQ13224 1484 aa34.02■■■■□ 3.04
HDAC7-220ENST00000471235 SNAPC4Q5SXM2 1469 aa34.01■■■■□ 3.03
HDAC7-220ENST00000471235 MAGI1Q96QZ7 1491 aaPredicted RBP33.95■■■■□ 3.02
HDAC7-220ENST00000471235 DNAJC5Q9H3Z4 198 aa33.92■■■■□ 3.02
HDAC7-220ENST00000471235 ADAMTS12P58397 1594 aa33.85■■■■□ 3.01
HDAC7-220ENST00000471235 ERICH3Q5RHP9 1530 aa33.84■■■■□ 3.01
HDAC7-220ENST00000471235 SYNJ2O15056 1496 aa33.8■■■■□ 3
HDAC7-220ENST00000471235 OSCARQ8IYS5 282 aa33.74■■■□□ 2.99
HDAC7-220ENST00000471235 KIF27Q86VH2 1401 aa33.73■■■□□ 2.99
HDAC7-220ENST00000471235 FBLN2P98095 1184 aa33.69■■■□□ 2.98
HDAC7-220ENST00000471235 CUL7Q14999 1698 aa33.66■■■□□ 2.98
HDAC7-220ENST00000471235 FHAD1B1AJZ9 1412 aa33.65■■■□□ 2.98
HDAC7-220ENST00000471235 TRIM41Q8WV44 630 aa33.65■■■□□ 2.98
HDAC7-220ENST00000471235 CHMP7Q8WUX9 453 aaPredicted RBP33.63■■■□□ 2.97
HDAC7-220ENST00000471235 GRIN2AQ12879 1464 aa33.62■■■□□ 2.97
HDAC7-220ENST00000471235 CLASP1Q7Z460 1538 aa33.59■■■□□ 2.97
HDAC7-220ENST00000471235 RUSC2Q8N2Y8 1516 aa33.53■■■□□ 2.96
HDAC7-220ENST00000471235 IGF1RP08069 1367 aa33.53■■■□□ 2.96
HDAC7-220ENST00000471235 CEP170Q5SW79 1584 aa33.51■■■□□ 2.96
HDAC7-220ENST00000471235 NUP160Q12769 1436 aa33.45■■■□□ 2.95
HDAC7-220ENST00000471235 RIMBP3CA6NJZ7 1639 aa33.45■■■□□ 2.95
HDAC7-220ENST00000471235 RIMBP3BA6NNM3 1639 aa33.45■■■□□ 2.95
HDAC7-220ENST00000471235 RIMBP3Q9UFD9 1639 aa33.45■■■□□ 2.95
HDAC7-220ENST00000471235 ARHGEF11O15085 1522 aa33.39■■■□□ 2.94
HDAC7-220ENST00000471235 CHIC1Q5VXU3 224 aa33.39■■■□□ 2.94
HDAC7-220ENST00000471235 CARMIL1Q5VZK9 1371 aa33.35■■■□□ 2.93
HDAC7-220ENST00000471235 SHROOM2Q13796 1616 aa33.3■■■□□ 2.92
HDAC7-220ENST00000471235 RAPGEF2Q9Y4G8 1499 aa33.23■■■□□ 2.91
HDAC7-220ENST00000471235 EEA1Q15075 1411 aa33.2■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms