RNA–Protein interactions for RNA: ENST00000471047.1

CLK2-204, Transcript of CDC like kinase 2, humanhuman

TSL 3

Gene CLK2, Length 701 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK2-204ENST00000471047 NISCHQ9Y2I1 1504 aa22.83■■□□□ 1.25
CLK2-204ENST00000471047 ABCC9O60706 1549 aa21.14■□□□□ 0.97
CLK2-204ENST00000471047 CCDC180Q9P1Z9 1646 aa20.5■□□□□ 0.87
CLK2-204ENST00000471047 DNAJC5BQ9UF47 199 aa20.33■□□□□ 0.85
CLK2-204ENST00000471047 RB1CC1Q8TDY2 1594 aa19.79■□□□□ 0.76
CLK2-204ENST00000471047 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLK2-204ENST00000471047 NACADO15069 1562 aa19.55■□□□□ 0.72
CLK2-204ENST00000471047 DCAF8L2P0C7V8 631 aa19.47■□□□□ 0.71
CLK2-204ENST00000471047 UNC13AQ9UPW8 1703 aa19.31■□□□□ 0.68
CLK2-204ENST00000471047 BICRAQ9NZM4 1560 aa19.3■□□□□ 0.68
CLK2-204ENST00000471047 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
CLK2-204ENST00000471047 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
CLK2-204ENST00000471047 CECR2Q9BXF3 1484 aa19.07■□□□□ 0.64
CLK2-204ENST00000471047 CC2D2AQ9P2K1 1620 aa19.01■□□□□ 0.63
CLK2-204ENST00000471047 DNAJC5Q9H3Z4 198 aa18.95■□□□□ 0.62
CLK2-204ENST00000471047 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
CLK2-204ENST00000471047 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
CLK2-204ENST00000471047 EIF4G1Q04637 1599 aaKnown RBP18.85■□□□□ 0.61
CLK2-204ENST00000471047 SCRIBQ14160 1630 aa18.76■□□□□ 0.59
CLK2-204ENST00000471047 CUX2O14529 1486 aa18.34■□□□□ 0.53
CLK2-204ENST00000471047 ERCC6Q03468 1493 aa18.25■□□□□ 0.51
CLK2-204ENST00000471047 NCAPD3P42695 1498 aa18.1■□□□□ 0.49
CLK2-204ENST00000471047 NESP48681 1621 aa18.03■□□□□ 0.48
CLK2-204ENST00000471047 ATAD2BQ9ULI0 1458 aa18■□□□□ 0.47
CLK2-204ENST00000471047 TRIM41Q8WV44 630 aa17.96■□□□□ 0.47
CLK2-204ENST00000471047 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
CLK2-204ENST00000471047 THOC2Q8NI27 1593 aaKnown RBP17.87■□□□□ 0.45
CLK2-204ENST00000471047 SMARCA2P51531 1590 aa17.86■□□□□ 0.45
CLK2-204ENST00000471047 SMARCA4P51532 1647 aa17.81■□□□□ 0.44
CLK2-204ENST00000471047 BAZ1BQ9UIG0 1483 aaKnown RBP17.78■□□□□ 0.44
CLK2-204ENST00000471047 LAMC3Q9Y6N6 1575 aa17.71■□□□□ 0.43
CLK2-204ENST00000471047 KIF21AQ7Z4S6 1674 aa17.68■□□□□ 0.42
CLK2-204ENST00000471047 PDS5BQ9NTI5 1447 aa17.67■□□□□ 0.42
CLK2-204ENST00000471047 BAZ1AQ9NRL2 1556 aaPredicted RBP17.65■□□□□ 0.42
CLK2-204ENST00000471047 RSF1Q96T23 1441 aaPredicted RBP17.63■□□□□ 0.41
CLK2-204ENST00000471047 PEG3Q9GZU2 1588 aa17.62■□□□□ 0.41
CLK2-204ENST00000471047 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
CLK2-204ENST00000471047 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
CLK2-204ENST00000471047 SUPT5HO00267 1087 aaKnown RBP17.56■□□□□ 0.4
CLK2-204ENST00000471047 CADPSQ9ULU8 1353 aa17.54■□□□□ 0.4
CLK2-204ENST00000471047 WDR62O43379 1518 aa17.52■□□□□ 0.4
CLK2-204ENST00000471047 OSCARQ8IYS5 282 aa17.46■□□□□ 0.39
CLK2-204ENST00000471047 WIZO95785 1651 aa17.45■□□□□ 0.38
CLK2-204ENST00000471047 CEP164Q9UPV0 1460 aa17.38■□□□□ 0.37
CLK2-204ENST00000471047 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
CLK2-204ENST00000471047 TOP2AP11388 1531 aaKnown RBP17.3■□□□□ 0.36
CLK2-204ENST00000471047 RIMBP3CA6NJZ7 1639 aa17.26■□□□□ 0.35
CLK2-204ENST00000471047 RIMBP3BA6NNM3 1639 aa17.26■□□□□ 0.35
CLK2-204ENST00000471047 RIMBP3Q9UFD9 1639 aa17.26■□□□□ 0.35
CLK2-204ENST00000471047 URB2Q14146 1524 aaKnown RBP17.26■□□□□ 0.35
CLK2-204ENST00000471047 CFTRP13569 1480 aa17.24■□□□□ 0.35
CLK2-204ENST00000471047 ARHGEF11O15085 1522 aa17.19■□□□□ 0.34
CLK2-204ENST00000471047 ZNF608Q9ULD9 1512 aaPredicted RBP17.14■□□□□ 0.33
CLK2-204ENST00000471047 CYB5RLQ6IPT4 315 aa17.13■□□□□ 0.33
CLK2-204ENST00000471047 TRHP20396 242 aaPredicted RBP17.09■□□□□ 0.33
CLK2-204ENST00000471047 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
CLK2-204ENST00000471047 IFT140Q96RY7 1462 aa17.05■□□□□ 0.32
CLK2-204ENST00000471047 ARAP1Q96P48 1450 aa17.01■□□□□ 0.31
CLK2-204ENST00000471047 TOPBP1Q92547 1522 aa16.96■□□□□ 0.3
CLK2-204ENST00000471047 EIF4G3O43432 1585 aaKnown RBP16.94■□□□□ 0.3
CLK2-204ENST00000471047 AQRO60306 1485 aaKnown RBP eCLIP16.93■□□□□ 0.31e-7■■■■□ 25
CLK2-204ENST00000471047 PRDM2Q13029 1718 aa16.91■□□□□ 0.3
CLK2-204ENST00000471047 FBLN2P98095 1184 aa16.91■□□□□ 0.3
CLK2-204ENST00000471047 AEBP2Q6ZN18 517 aaPredicted RBP16.91■□□□□ 0.3
CLK2-204ENST00000471047 CHD1O14646 1710 aa16.87■□□□□ 0.29
CLK2-204ENST00000471047 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
CLK2-204ENST00000471047 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
CLK2-204ENST00000471047 ABCC8Q09428 1581 aa16.81■□□□□ 0.28
CLK2-204ENST00000471047 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
CLK2-204ENST00000471047 POLA1P09884 1462 aaPredicted RBP16.77■□□□□ 0.28
CLK2-204ENST00000471047 RAD54L2Q9Y4B4 1467 aa16.75■□□□□ 0.27
CLK2-204ENST00000471047 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
CLK2-204ENST00000471047 CLASP1Q7Z460 1538 aa16.73■□□□□ 0.27
CLK2-204ENST00000471047 SNAPC4Q5SXM2 1469 aa16.71■□□□□ 0.27
CLK2-204ENST00000471047 CHMP7Q8WUX9 453 aaPredicted RBP16.68■□□□□ 0.26
CLK2-204ENST00000471047 SOGA1O94964 1423 aa16.68■□□□□ 0.26
CLK2-204ENST00000471047 SYNJ1O43426 1573 aa16.63■□□□□ 0.25
CLK2-204ENST00000471047 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
CLK2-204ENST00000471047 MAGI1Q96QZ7 1491 aaPredicted RBP16.6■□□□□ 0.25
CLK2-204ENST00000471047 FGD5Q6ZNL6 1462 aa16.59■□□□□ 0.25
CLK2-204ENST00000471047 SYNJ2O15056 1496 aa16.57■□□□□ 0.24
CLK2-204ENST00000471047 GRIN2BQ13224 1484 aa16.57■□□□□ 0.24
CLK2-204ENST00000471047 WRNQ14191 1432 aaPredicted RBP eCLIP16.57■□□□□ 0.24
CLK2-204ENST00000471047 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
CLK2-204ENST00000471047 TOP2BQ02880 1626 aa16.51■□□□□ 0.23
CLK2-204ENST00000471047 BIVM-ERCC5R4GMW8 1640 aa16.51■□□□□ 0.23
CLK2-204ENST00000471047 CUX1P39880 1505 aa16.5■□□□□ 0.23
CLK2-204ENST00000471047 ERCC6L2Q5T890 1561 aa16.49■□□□□ 0.23
CLK2-204ENST00000471047 PBRM1Q86U86 1689 aa16.4■□□□□ 0.22
CLK2-204ENST00000471047 CEP170Q5SW79 1584 aa16.37■□□□□ 0.21
CLK2-204ENST00000471047 GRIN2AQ12879 1464 aa16.36■□□□□ 0.21
CLK2-204ENST00000471047 ABCA10Q8WWZ4 1543 aa16.35■□□□□ 0.21
CLK2-204ENST00000471047 ABCA5Q8WWZ7 1642 aa16.34■□□□□ 0.21
CLK2-204ENST00000471047 NUP160Q12769 1436 aa16.34■□□□□ 0.21
CLK2-204ENST00000471047 KIF13AQ9H1H9 1805 aa16.29■□□□□ 0.2
CLK2-204ENST00000471047 ILDR1Q86SU0 546 aaPredicted RBP16.29■□□□□ 0.2
CLK2-204ENST00000471047 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
CLK2-204ENST00000471047 KDM4FA0A1W2PPD8 638 aa16.27■□□□□ 0.2
CLK2-204ENST00000471047 FAM69CQ0P6D2 419 aa16.27■□□□□ 0.2
CLK2-204ENST00000471047 EEA1Q15075 1411 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms