RNA–Protein interactions for RNA: ENST00000470835.1

LMNA-212, Transcript of lamin A/C, humanhuman

TSL 3

Gene LMNA, Length 472 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-212ENST00000470835 NISCHQ9Y2I1 1504 aa43.39■■■■■ 4.54
LMNA-212ENST00000470835 CCDC180Q9P1Z9 1646 aa39.02■■■■□ 3.84
LMNA-212ENST00000470835 ABCC9O60706 1549 aa38.82■■■■□ 3.8
LMNA-212ENST00000470835 RB1CC1Q8TDY2 1594 aa37.04■■■■□ 3.52
LMNA-212ENST00000470835 NACADO15069 1562 aa36.78■■■■□ 3.48
LMNA-212ENST00000470835 DCAF8L2P0C7V8 631 aa36.48■■■■□ 3.43
LMNA-212ENST00000470835 UNC13AQ9UPW8 1703 aa36.32■■■■□ 3.4
LMNA-212ENST00000470835 MYO15BQ96JP2 1530 aa36.28■■■■□ 3.4
LMNA-212ENST00000470835 DNAJC5BQ9UF47 199 aa36.23■■■■□ 3.39
LMNA-212ENST00000470835 PABPN1Q86U42 306 aaKnown RBP eCLIP36.07■■■■□ 3.36
LMNA-212ENST00000470835 ZCCHC6Q5VYS8 1495 aaKnown RBP36■■■■□ 3.35
LMNA-212ENST00000470835 BICRAQ9NZM4 1560 aa35.95■■■■□ 3.35
LMNA-212ENST00000470835 DCAF1Q9Y4B6 1507 aa35.86■■■■□ 3.33
LMNA-212ENST00000470835 SCRIBQ14160 1630 aa35.53■■■■□ 3.28
LMNA-212ENST00000470835 SHROOM4Q9ULL8 1493 aa35.47■■■■□ 3.27
LMNA-212ENST00000470835 CC2D2AQ9P2K1 1620 aa35.12■■■■□ 3.21
LMNA-212ENST00000470835 EIF4G1Q04637 1599 aaKnown RBP35.06■■■■□ 3.2
LMNA-212ENST00000470835 CECR2Q9BXF3 1484 aa34.95■■■■□ 3.19
LMNA-212ENST00000470835 NCAPD3P42695 1498 aa33.89■■■■□ 3.02
LMNA-212ENST00000470835 SMARCA4P51532 1647 aa33.89■■■■□ 3.02
LMNA-212ENST00000470835 ATAD2BQ9ULI0 1458 aa33.82■■■■□ 3
LMNA-212ENST00000470835 SMARCA2P51531 1590 aa33.78■■■■□ 3
LMNA-212ENST00000470835 HMGXB3Q12766 1538 aa33.73■■■□□ 2.99
LMNA-212ENST00000470835 BAZ1AQ9NRL2 1556 aaPredicted RBP33.71■■■□□ 2.99
LMNA-212ENST00000470835 PEG3Q9GZU2 1588 aa33.54■■■□□ 2.96
LMNA-212ENST00000470835 BAZ1BQ9UIG0 1483 aaKnown RBP33.53■■■□□ 2.96
LMNA-212ENST00000470835 ERCC6Q03468 1493 aa33.52■■■□□ 2.96
LMNA-212ENST00000470835 MROH2BQ7Z745 1585 aa33.44■■■□□ 2.94
LMNA-212ENST00000470835 CUX2O14529 1486 aa33.43■■■□□ 2.94
LMNA-212ENST00000470835 NESP48681 1621 aa33.38■■■□□ 2.93
LMNA-212ENST00000470835 DNAJC5Q9H3Z4 198 aa33.2■■■□□ 2.91
LMNA-212ENST00000470835 LAMC3Q9Y6N6 1575 aa33.2■■■□□ 2.91
LMNA-212ENST00000470835 WIZO95785 1651 aa33.1■■■□□ 2.89
LMNA-212ENST00000470835 THOC2Q8NI27 1593 aaKnown RBP33.09■■■□□ 2.89
LMNA-212ENST00000470835 KIF21AQ7Z4S6 1674 aa33.06■■■□□ 2.88
LMNA-212ENST00000470835 PDS5BQ9NTI5 1447 aa32.93■■■□□ 2.86
LMNA-212ENST00000470835 CADPSQ9ULU8 1353 aa32.84■■■□□ 2.85
LMNA-212ENST00000470835 RSF1Q96T23 1441 aaPredicted RBP32.73■■■□□ 2.83
LMNA-212ENST00000470835 MRC2Q9UBG0 1479 aa32.68■■■□□ 2.82
LMNA-212ENST00000470835 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
LMNA-212ENST00000470835 WDR62O43379 1518 aa32.62■■■□□ 2.81
LMNA-212ENST00000470835 CEP164Q9UPV0 1460 aa32.59■■■□□ 2.81
LMNA-212ENST00000470835 CFTRP13569 1480 aa32.53■■■□□ 2.8
LMNA-212ENST00000470835 FANCD2Q9BXW9 1451 aa32.53■■■□□ 2.8
LMNA-212ENST00000470835 PRDM2Q13029 1718 aa32.42■■■□□ 2.78
LMNA-212ENST00000470835 URB2Q14146 1524 aaKnown RBP32.27■■■□□ 2.76
LMNA-212ENST00000470835 CCDC88BA6NC98 1476 aa32.23■■■□□ 2.75
LMNA-212ENST00000470835 TOPBP1Q92547 1522 aa31.94■■■□□ 2.7
LMNA-212ENST00000470835 IFT140Q96RY7 1462 aa31.9■■■□□ 2.7
LMNA-212ENST00000470835 DNMBPQ6XZF7 1577 aa31.86■■■□□ 2.69
LMNA-212ENST00000470835 ABCC8Q09428 1581 aa31.85■■■□□ 2.69
LMNA-212ENST00000470835 ZNF608Q9ULD9 1512 aaPredicted RBP31.85■■■□□ 2.69
LMNA-212ENST00000470835 OSCARQ8IYS5 282 aa31.82■■■□□ 2.68
LMNA-212ENST00000470835 TRIM41Q8WV44 630 aa31.82■■■□□ 2.68
LMNA-212ENST00000470835 EIF4G3O43432 1585 aaKnown RBP31.77■■■□□ 2.68
LMNA-212ENST00000470835 TARBP1Q13395 1621 aaKnown RBP31.68■■■□□ 2.66
LMNA-212ENST00000470835 POLA1P09884 1462 aaPredicted RBP31.61■■■□□ 2.65
LMNA-212ENST00000470835 CHD1O14646 1710 aa31.55■■■□□ 2.64
LMNA-212ENST00000470835 RIMBP3CA6NJZ7 1639 aa31.55■■■□□ 2.64
LMNA-212ENST00000470835 RIMBP3BA6NNM3 1639 aa31.55■■■□□ 2.64
LMNA-212ENST00000470835 RIMBP3Q9UFD9 1639 aa31.55■■■□□ 2.64
LMNA-212ENST00000470835 AQRO60306 1485 aaKnown RBP eCLIP31.53■■■□□ 2.64
LMNA-212ENST00000470835 RAD54L2Q9Y4B4 1467 aa31.46■■■□□ 2.63
LMNA-212ENST00000470835 FGD5Q6ZNL6 1462 aa31.44■■■□□ 2.62
LMNA-212ENST00000470835 CUX1P39880 1505 aa31.43■■■□□ 2.62
LMNA-212ENST00000470835 ARHGEF11O15085 1522 aa31.42■■■□□ 2.62
LMNA-212ENST00000470835 SOGA1O94964 1423 aa31.41■■■□□ 2.62
LMNA-212ENST00000470835 WDR97A6NE52 1622 aa31.38■■■□□ 2.61
LMNA-212ENST00000470835 TDRD9Q8NDG6 1382 aaKnown RBP31.34■■■□□ 2.61
LMNA-212ENST00000470835 SUPT5HO00267 1087 aaKnown RBP31.3■■■□□ 2.6
LMNA-212ENST00000470835 FBLN2P98095 1184 aa31.28■■■□□ 2.6
LMNA-212ENST00000470835 SNAPC4Q5SXM2 1469 aa31.27■■■□□ 2.6
LMNA-212ENST00000470835 PBRM1Q86U86 1689 aa31.19■■■□□ 2.58
LMNA-212ENST00000470835 MAGI1Q96QZ7 1491 aaPredicted RBP31.19■■■□□ 2.58
LMNA-212ENST00000470835 GRIN2BQ13224 1484 aa31.17■■■□□ 2.58
LMNA-212ENST00000470835 SYNJ1O43426 1573 aa31.11■■■□□ 2.57
LMNA-212ENST00000470835 CLASP1Q7Z460 1538 aa31.11■■■□□ 2.57
LMNA-212ENST00000470835 ARAP1Q96P48 1450 aa31.11■■■□□ 2.57
LMNA-212ENST00000470835 ABCA5Q8WWZ7 1642 aa31.09■■■□□ 2.57
LMNA-212ENST00000470835 CYB5RLQ6IPT4 315 aa31.08■■■□□ 2.57
LMNA-212ENST00000470835 SYNJ2O15056 1496 aa31.08■■■□□ 2.57
LMNA-212ENST00000470835 GAPVD1Q14C86 1478 aa31.08■■■□□ 2.57
LMNA-212ENST00000470835 ABCA10Q8WWZ4 1543 aa31.07■■■□□ 2.56
LMNA-212ENST00000470835 CHMP7Q8WUX9 453 aaPredicted RBP31.05■■■□□ 2.56
LMNA-212ENST00000470835 BIVM-ERCC5R4GMW8 1640 aa31.02■■■□□ 2.56
LMNA-212ENST00000470835 TOP2BQ02880 1626 aa30.98■■■□□ 2.55
LMNA-212ENST00000470835 WRNQ14191 1432 aaPredicted RBP eCLIP30.93■■■□□ 2.54
LMNA-212ENST00000470835 ADAMTS12P58397 1594 aa30.85■■■□□ 2.53
LMNA-212ENST00000470835 GRIN2AQ12879 1464 aa30.79■■■□□ 2.52
LMNA-212ENST00000470835 TRHP20396 242 aaPredicted RBP30.72■■■□□ 2.51
LMNA-212ENST00000470835 CEP170Q5SW79 1584 aa30.71■■■□□ 2.51
LMNA-212ENST00000470835 ERICH3Q5RHP9 1530 aa30.7■■■□□ 2.51
LMNA-212ENST00000470835 FHAD1B1AJZ9 1412 aa30.67■■■□□ 2.5
LMNA-212ENST00000470835 NUP160Q12769 1436 aa30.66■■■□□ 2.5
LMNA-212ENST00000470835 ERCC6L2Q5T890 1561 aa30.62■■■□□ 2.49
LMNA-212ENST00000470835 SHROOM2Q13796 1616 aa30.59■■■□□ 2.49
LMNA-212ENST00000470835 RUSC2Q8N2Y8 1516 aa30.42■■■□□ 2.46
LMNA-212ENST00000470835 CUL7Q14999 1698 aa30.34■■■□□ 2.45
LMNA-212ENST00000470835 PRG4Q92954 1404 aaPredicted RBP30.34■■■□□ 2.45
LMNA-212ENST00000470835 KIF27Q86VH2 1401 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 257.1 ms