RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NISCHQ9Y2I1 1504 aa35.37■■■■□ 3.25
COL9A3-209ENST00000469852 CCDC180Q9P1Z9 1646 aa31.26■■■□□ 2.59
COL9A3-209ENST00000469852 ABCC9O60706 1549 aa30.36■■■□□ 2.45
COL9A3-209ENST00000469852 ZCCHC6Q5VYS8 1495 aaKnown RBP29.56■■■□□ 2.32
COL9A3-209ENST00000469852 DCAF8L2P0C7V8 631 aa29.36■■■□□ 2.29
COL9A3-209ENST00000469852 NACADO15069 1562 aa29.26■■■□□ 2.27
COL9A3-209ENST00000469852 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
COL9A3-209ENST00000469852 RB1CC1Q8TDY2 1594 aa29.21■■■□□ 2.27
COL9A3-209ENST00000469852 MYO15BQ96JP2 1530 aa29.19■■■□□ 2.26
COL9A3-209ENST00000469852 UNC13AQ9UPW8 1703 aa28.68■■■□□ 2.18
COL9A3-209ENST00000469852 DNAJC5BQ9UF47 199 aa28.65■■■□□ 2.18
COL9A3-209ENST00000469852 SCRIBQ14160 1630 aa28.61■■■□□ 2.17
COL9A3-209ENST00000469852 BICRAQ9NZM4 1560 aa28.41■■■□□ 2.14
COL9A3-209ENST00000469852 PABPN1Q86U42 306 aaKnown RBP eCLIP28.33■■■□□ 2.131e-11■■■□□ 15.9
COL9A3-209ENST00000469852 SHROOM4Q9ULL8 1493 aa28.24■■■□□ 2.11
COL9A3-209ENST00000469852 EIF4G1Q04637 1599 aaKnown RBP27.58■■■□□ 2.01
COL9A3-209ENST00000469852 CECR2Q9BXF3 1484 aa27.57■■■□□ 2
COL9A3-209ENST00000469852 CC2D2AQ9P2K1 1620 aa27.42■■□□□ 1.98
COL9A3-209ENST00000469852 SMARCA4P51532 1647 aa27.38■■□□□ 1.97
COL9A3-209ENST00000469852 BAZ1AQ9NRL2 1556 aaPredicted RBP27.35■■□□□ 1.97
COL9A3-209ENST00000469852 MROH2BQ7Z745 1585 aa27.31■■□□□ 1.96
COL9A3-209ENST00000469852 RSF1Q96T23 1441 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-209ENST00000469852 ATAD2BQ9ULI0 1458 aa27.11■■□□□ 1.93
COL9A3-209ENST00000469852 PEG3Q9GZU2 1588 aa27.08■■□□□ 1.93
COL9A3-209ENST00000469852 WIZO95785 1651 aa27.06■■□□□ 1.92
COL9A3-209ENST00000469852 SMARCA2P51531 1590 aa27.05■■□□□ 1.92
COL9A3-209ENST00000469852 NCAPD3P42695 1498 aa27■■□□□ 1.91
COL9A3-209ENST00000469852 HMGXB3Q12766 1538 aa26.92■■□□□ 1.9
COL9A3-209ENST00000469852 BAZ1BQ9UIG0 1483 aaKnown RBP26.89■■□□□ 1.9
COL9A3-209ENST00000469852 TOP2AP11388 1531 aaKnown RBP26.74■■□□□ 1.87
COL9A3-209ENST00000469852 SUPT5HO00267 1087 aaKnown RBP26.72■■□□□ 1.87
COL9A3-209ENST00000469852 CCDC88BA6NC98 1476 aa26.43■■□□□ 1.82
COL9A3-209ENST00000469852 DNAJC5Q9H3Z4 198 aa26.35■■□□□ 1.81
COL9A3-209ENST00000469852 NESP48681 1621 aa26.33■■□□□ 1.81
COL9A3-209ENST00000469852 CADPSQ9ULU8 1353 aa26.23■■□□□ 1.79
COL9A3-209ENST00000469852 LAMC3Q9Y6N6 1575 aa26.23■■□□□ 1.79
COL9A3-209ENST00000469852 CUX2O14529 1486 aa26.2■■□□□ 1.78
COL9A3-209ENST00000469852 CFTRP13569 1480 aa26.18■■□□□ 1.78
COL9A3-209ENST00000469852 ERCC6Q03468 1493 aa26.17■■□□□ 1.78
COL9A3-209ENST00000469852 PRDM2Q13029 1718 aa26.06■■□□□ 1.76
COL9A3-209ENST00000469852 KIF21AQ7Z4S6 1674 aa26.03■■□□□ 1.76
COL9A3-209ENST00000469852 PDS5BQ9NTI5 1447 aa25.99■■□□□ 1.75
COL9A3-209ENST00000469852 FANCD2Q9BXW9 1451 aa25.96■■□□□ 1.75
COL9A3-209ENST00000469852 CEP164Q9UPV0 1460 aa25.87■■□□□ 1.73
COL9A3-209ENST00000469852 THOC2Q8NI27 1593 aaKnown RBP25.82■■□□□ 1.72
COL9A3-209ENST00000469852 MRC2Q9UBG0 1479 aa25.76■■□□□ 1.71
COL9A3-209ENST00000469852 URB2Q14146 1524 aaKnown RBP25.72■■□□□ 1.71
COL9A3-209ENST00000469852 WDR62O43379 1518 aa25.68■■□□□ 1.7
COL9A3-209ENST00000469852 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
COL9A3-209ENST00000469852 TOPBP1Q92547 1522 aa25.61■■□□□ 1.69
COL9A3-209ENST00000469852 DNMBPQ6XZF7 1577 aa25.61■■□□□ 1.69
COL9A3-209ENST00000469852 CUX1P39880 1505 aa25.59■■□□□ 1.69
COL9A3-209ENST00000469852 WRNQ14191 1432 aaPredicted RBP eCLIP25.52■■□□□ 1.68
COL9A3-209ENST00000469852 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
COL9A3-209ENST00000469852 BIVM-ERCC5R4GMW8 1640 aa25.46■■□□□ 1.67
COL9A3-209ENST00000469852 TOP2BQ02880 1626 aa25.45■■□□□ 1.67
COL9A3-209ENST00000469852 POLA1P09884 1462 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-209ENST00000469852 FGD5Q6ZNL6 1462 aa25.42■■□□□ 1.66
COL9A3-209ENST00000469852 RAD54L2Q9Y4B4 1467 aa25.34■■□□□ 1.65
COL9A3-209ENST00000469852 TARBP1Q13395 1621 aaKnown RBP25.33■■□□□ 1.65
COL9A3-209ENST00000469852 IFT140Q96RY7 1462 aa25.3■■□□□ 1.64
COL9A3-209ENST00000469852 SOGA1O94964 1423 aa25.29■■□□□ 1.64
COL9A3-209ENST00000469852 ZNF608Q9ULD9 1512 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-209ENST00000469852 WDR97A6NE52 1622 aa25.23■■□□□ 1.63
COL9A3-209ENST00000469852 CHIC1Q5VXU3 224 aa25.18■■□□□ 1.62
COL9A3-209ENST00000469852 ABCA10Q8WWZ4 1543 aa25.17■■□□□ 1.62
COL9A3-209ENST00000469852 TRIM41Q8WV44 630 aa25.16■■□□□ 1.62
COL9A3-209ENST00000469852 EIF4G3O43432 1585 aaKnown RBP25.15■■□□□ 1.62
COL9A3-209ENST00000469852 TDRD9Q8NDG6 1382 aaKnown RBP25.13■■□□□ 1.61
COL9A3-209ENST00000469852 AQRO60306 1485 aaKnown RBP eCLIP25.12■■□□□ 1.61
COL9A3-209ENST00000469852 ABCA5Q8WWZ7 1642 aa25.08■■□□□ 1.6
COL9A3-209ENST00000469852 GAPVD1Q14C86 1478 aa25.01■■□□□ 1.59
COL9A3-209ENST00000469852 PBRM1Q86U86 1689 aa24.99■■□□□ 1.59
COL9A3-209ENST00000469852 OSCARQ8IYS5 282 aa24.98■■□□□ 1.59
COL9A3-209ENST00000469852 RUSC2Q8N2Y8 1516 aa24.95■■□□□ 1.58
COL9A3-209ENST00000469852 GRIN2BQ13224 1484 aa24.94■■□□□ 1.58
COL9A3-209ENST00000469852 KIF27Q86VH2 1401 aa24.92■■□□□ 1.58
COL9A3-209ENST00000469852 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.58
COL9A3-209ENST00000469852 ERICH3Q5RHP9 1530 aa24.86■■□□□ 1.57
COL9A3-209ENST00000469852 MAGI1Q96QZ7 1491 aaPredicted RBP24.82■■□□□ 1.56
COL9A3-209ENST00000469852 IGF1RP08069 1367 aa24.81■■□□□ 1.56
COL9A3-209ENST00000469852 ADAMTS12P58397 1594 aa24.8■■□□□ 1.56
COL9A3-209ENST00000469852 CHD1O14646 1710 aa24.78■■□□□ 1.56
COL9A3-209ENST00000469852 SYNJ2O15056 1496 aa24.73■■□□□ 1.55
COL9A3-209ENST00000469852 CUL7Q14999 1698 aa24.72■■□□□ 1.55
COL9A3-209ENST00000469852 FHAD1B1AJZ9 1412 aa24.71■■□□□ 1.55
COL9A3-209ENST00000469852 FAM9AQ8IZU1 332 aaPredicted RBP24.7■■□□□ 1.54
COL9A3-209ENST00000469852 RIMBP3CA6NJZ7 1639 aa24.69■■□□□ 1.54
COL9A3-209ENST00000469852 RIMBP3BA6NNM3 1639 aa24.69■■□□□ 1.54
COL9A3-209ENST00000469852 RIMBP3Q9UFD9 1639 aa24.69■■□□□ 1.54
COL9A3-209ENST00000469852 FBLN2P98095 1184 aa24.69■■□□□ 1.54
COL9A3-209ENST00000469852 EEA1Q15075 1411 aa24.68■■□□□ 1.54
COL9A3-209ENST00000469852 CHMP7Q8WUX9 453 aaPredicted RBP24.65■■□□□ 1.54
COL9A3-209ENST00000469852 CARMIL1Q5VZK9 1371 aa24.65■■□□□ 1.54
COL9A3-209ENST00000469852 GRIN2AQ12879 1464 aa24.64■■□□□ 1.54
COL9A3-209ENST00000469852 CSRNP3Q8WYN3 585 aa24.62■■□□□ 1.53
COL9A3-209ENST00000469852 ARHGEF11O15085 1522 aa24.6■■□□□ 1.53
COL9A3-209ENST00000469852 PRXQ9BXM0 1461 aa24.59■■□□□ 1.53
COL9A3-209ENST00000469852 RAPGEF2Q9Y4G8 1499 aa24.56■■□□□ 1.52
COL9A3-209ENST00000469852 CEP170Q5SW79 1584 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms