RNA–Protein interactions for RNA: ENST00000469334.5

SMARCE1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 2,128 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-207ENST00000469334 NISCHQ9Y2I1 1504 aa16.38■□□□□ 0.21
SMARCE1-207ENST00000469334 PELP1Q8IZL8 1130 aaKnown RBP15.51■□□□□ 0.07
SMARCE1-207ENST00000469334 HRCP23327 699 aa15.36■□□□□ 0.05
SMARCE1-207ENST00000469334 MYT1Q01538 1121 aa15.1■□□□□ 0.01
SMARCE1-207ENST00000469334 PPARGC1BQ86YN6 1023 aaKnown RBP14.74□□□□□ -0.05
SMARCE1-207ENST00000469334 PCGF6Q9BYE7 350 aa14.7□□□□□ -0.06
SMARCE1-207ENST00000469334 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
SMARCE1-207ENST00000469334 DCAF1Q9Y4B6 1507 aa14.65□□□□□ -0.06
SMARCE1-207ENST00000469334 CCDC180Q9P1Z9 1646 aa14.59□□□□□ -0.07
SMARCE1-207ENST00000469334 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.08
SMARCE1-207ENST00000469334 ZEB1P37275 1124 aaPredicted RBP14.5□□□□□ -0.09
SMARCE1-207ENST00000469334 CHIC1Q5VXU3 224 aa14.43□□□□□ -0.1
SMARCE1-207ENST00000469334 SUPT5HO00267 1087 aaKnown RBP14.38□□□□□ -0.11
SMARCE1-207ENST00000469334 TRIM26Q12899 539 aaPredicted RBP14.36□□□□□ -0.11
SMARCE1-207ENST00000469334 TTBK1Q5TCY1 1321 aaPredicted RBP14.32□□□□□ -0.12
SMARCE1-207ENST00000469334 SHROOM4Q9ULL8 1493 aa14.3□□□□□ -0.12
SMARCE1-207ENST00000469334 ACIN1Q9UKV3 1341 aaKnown RBP14.23□□□□□ -0.13
SMARCE1-207ENST00000469334 CENPBP07199 599 aaPredicted RBP14.09□□□□□ -0.15
SMARCE1-207ENST00000469334 NEUROD1Q13562 356 aa14.06□□□□□ -0.16
SMARCE1-207ENST00000469334 ZCCHC6Q5VYS8 1495 aaKnown RBP14.03□□□□□ -0.16
SMARCE1-207ENST00000469334 GTF3C3Q9Y5Q9 886 aa14.03□□□□□ -0.16
SMARCE1-207ENST00000469334 LOC105371045A0A1W2PR82 267 aa13.93□□□□□ -0.18
SMARCE1-207ENST00000469334 DIEXFQ68CQ4 756 aaKnown RBP13.78□□□□□ -0.2
SMARCE1-207ENST00000469334 BCL11AQ9H165 835 aa13.73□□□□□ -0.21
SMARCE1-207ENST00000469334 CLSPNQ9HAW4 1339 aa13.67□□□□□ -0.22
SMARCE1-207ENST00000469334 TRIM41Q8WV44 630 aa13.63□□□□□ -0.23
SMARCE1-207ENST00000469334 ANP32EQ9BTT0 268 aa13.62□□□□□ -0.23
SMARCE1-207ENST00000469334 CCER1Q8TC90 406 aaPredicted RBP13.59□□□□□ -0.23
SMARCE1-207ENST00000469334 FAM9AQ8IZU1 332 aaPredicted RBP13.55□□□□□ -0.24
SMARCE1-207ENST00000469334 ZNF316A6NFI3 1004 aaPredicted RBP13.51□□□□□ -0.25
SMARCE1-207ENST00000469334 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.51□□□□□ -0.25
SMARCE1-207ENST00000469334 ABCC9O60706 1549 aa13.44□□□□□ -0.26
SMARCE1-207ENST00000469334 YTHDC1Q96MU7 727 aaKnown RBP13.4□□□□□ -0.26
SMARCE1-207ENST00000469334 PRKCSHP14314 528 aaPredicted RBP13.39□□□□□ -0.27
SMARCE1-207ENST00000469334 TSHZ2Q9NRE2 1034 aa13.37□□□□□ -0.27
SMARCE1-207ENST00000469334 ERICH6Q7L0X2 663 aa13.35□□□□□ -0.27
SMARCE1-207ENST00000469334 CSRNP3Q8WYN3 585 aa13.34□□□□□ -0.27
SMARCE1-207ENST00000469334 SUPT16HQ9Y5B9 1047 aaKnown RBP13.34□□□□□ -0.27
SMARCE1-207ENST00000469334 MIER1Q8N108 512 aa13.33□□□□□ -0.28
SMARCE1-207ENST00000469334 WRNQ14191 1432 aaPredicted RBP eCLIP13.32□□□□□ -0.28
SMARCE1-207ENST00000469334 RB1CC1Q8TDY2 1594 aa13.29□□□□□ -0.28
SMARCE1-207ENST00000469334 RSF1Q96T23 1441 aaPredicted RBP13.2□□□□□ -0.3
SMARCE1-207ENST00000469334 APLP2Q06481 763 aa13.13□□□□□ -0.31
SMARCE1-207ENST00000469334 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
SMARCE1-207ENST00000469334 DCAF8L2P0C7V8 631 aa13.09□□□□□ -0.31
SMARCE1-207ENST00000469334 CEP162Q5TB80 1403 aa13.03□□□□□ -0.32
SMARCE1-207ENST00000469334 RBM19Q9Y4C8 960 aaKnown RBP13.01□□□□□ -0.33
SMARCE1-207ENST00000469334 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
SMARCE1-207ENST00000469334 EIF4G1Q04637 1599 aaKnown RBP12.99□□□□□ -0.33
SMARCE1-207ENST00000469334 TNIKQ9UKE5 1360 aa12.99□□□□□ -0.33
SMARCE1-207ENST00000469334 FANCIQ9NVI1 1328 aa12.96□□□□□ -0.33
SMARCE1-207ENST00000469334 EEA1Q15075 1411 aa12.91□□□□□ -0.34
SMARCE1-207ENST00000469334 ERICH6BQ5W0A0 696 aa12.89□□□□□ -0.35
SMARCE1-207ENST00000469334 NEFLP07196 543 aa12.89□□□□□ -0.35
SMARCE1-207ENST00000469334 MSH5O43196 834 aa12.88□□□□□ -0.35
SMARCE1-207ENST00000469334 FKBP8Q14318 412 aa12.87□□□□□ -0.35
SMARCE1-207ENST00000469334 BCANQ96GW7 911 aa12.83□□□□□ -0.36
SMARCE1-207ENST00000469334 SCRIBQ14160 1630 aa12.82□□□□□ -0.36
SMARCE1-207ENST00000469334 BAZ1AQ9NRL2 1556 aaPredicted RBP12.82□□□□□ -0.36
SMARCE1-207ENST00000469334 GOLGA3Q08378 1498 aa12.81□□□□□ -0.36
SMARCE1-207ENST00000469334 DEKP35659 375 aaKnown RBP12.8□□□□□ -0.36
SMARCE1-207ENST00000469334 HNRNPUL2Q1KMD3 747 aaKnown RBP12.78□□□□□ -0.36
SMARCE1-207ENST00000469334 DHX57Q6P158 1386 aaKnown RBP12.78□□□□□ -0.36
SMARCE1-207ENST00000469334 ABCC8Q09428 1581 aa12.75□□□□□ -0.37
SMARCE1-207ENST00000469334 WIZO95785 1651 aa12.73□□□□□ -0.37
SMARCE1-207ENST00000469334 ANO8Q9HCE9 1232 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-207ENST00000469334 CCDC88BA6NC98 1476 aa12.72□□□□□ -0.37
SMARCE1-207ENST00000469334 MROH2BQ7Z745 1585 aa12.72□□□□□ -0.37
SMARCE1-207ENST00000469334 CDK11AQ9UQ88 783 aaPredicted RBP12.72□□□□□ -0.37
SMARCE1-207ENST00000469334 KIF21BO75037 1637 aa12.72□□□□□ -0.37
SMARCE1-207ENST00000469334 VPS8Q8N3P4 1428 aa12.71□□□□□ -0.37
SMARCE1-207ENST00000469334 NACADO15069 1562 aa12.71□□□□□ -0.38
SMARCE1-207ENST00000469334 UBE2Q2Q8WVN8 375 aa12.7□□□□□ -0.38
SMARCE1-207ENST00000469334 CUX2O14529 1486 aa12.68□□□□□ -0.38
SMARCE1-207ENST00000469334 CCER2I3L3R5 266 aa12.67□□□□□ -0.38
SMARCE1-207ENST00000469334 SOGA1O94964 1423 aa12.65□□□□□ -0.38
SMARCE1-207ENST00000469334 CEP164Q9UPV0 1460 aa12.65□□□□□ -0.38
SMARCE1-207ENST00000469334 ITGAEP38570 1179 aa12.64□□□□□ -0.39
SMARCE1-207ENST00000469334 BAZ1BQ9UIG0 1483 aaKnown RBP12.64□□□□□ -0.39
SMARCE1-207ENST00000469334 CLIP1P30622 1438 aa12.64□□□□□ -0.39
SMARCE1-207ENST00000469334 UBTFP17480 764 aaKnown RBP12.64□□□□□ -0.39
SMARCE1-207ENST00000469334 KCNH8Q96L42 1107 aa12.64□□□□□ -0.39
SMARCE1-207ENST00000469334 CECR2Q9BXF3 1484 aa12.63□□□□□ -0.39
SMARCE1-207ENST00000469334 SALL2Q9Y467 1007 aaPredicted RBP12.61□□□□□ -0.39
SMARCE1-207ENST00000469334 TOP2AP11388 1531 aaKnown RBP12.6□□□□□ -0.39
SMARCE1-207ENST00000469334 NOP58Q9Y2X3 529 aaKnown RBP12.59□□□□□ -0.39
SMARCE1-207ENST00000469334 RRBP1Q9P2E9 1410 aaKnown RBP12.55□□□□□ -0.4
SMARCE1-207ENST00000469334 RUSC2Q8N2Y8 1516 aa12.54□□□□□ -0.4
SMARCE1-207ENST00000469334 RTL5Q5HYW3 569 aaPredicted RBP12.53□□□□□ -0.4
SMARCE1-207ENST00000469334 SMARCA2P51531 1590 aa12.53□□□□□ -0.4
SMARCE1-207ENST00000469334 PPP4R2Q9NY27 417 aa12.52□□□□□ -0.4
SMARCE1-207ENST00000469334 PPP1R15AO75807 674 aaPredicted RBP12.52□□□□□ -0.41
SMARCE1-207ENST00000469334 ANP32CO43423 234 aa12.5□□□□□ -0.41
SMARCE1-207ENST00000469334 MAPKBP1O60336 1514 aa12.5□□□□□ -0.41
SMARCE1-207ENST00000469334 TRIM52Q96A61 297 aa12.48□□□□□ -0.41
SMARCE1-207ENST00000469334 DDX10Q13206 875 aaKnown RBP12.47□□□□□ -0.41
SMARCE1-207ENST00000469334 WDR97A6NE52 1622 aa12.47□□□□□ -0.41
SMARCE1-207ENST00000469334 TIMELESSQ9UNS1 1208 aa12.46□□□□□ -0.41
SMARCE1-207ENST00000469334 NBR1Q14596 966 aa12.46□□□□□ -0.42
SMARCE1-207ENST00000469334 C11orf95C9JLR9 678 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms