RNA–Protein interactions for RNA: ENST00000468958.1

ABCF1-204, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 3

Gene ABCF1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-204ENST00000468958 NISCHQ9Y2I1 1504 aa31.14■■■□□ 2.57
ABCF1-204ENST00000468958 CCDC180Q9P1Z9 1646 aa27.83■■■□□ 2.05
ABCF1-204ENST00000468958 ABCC9O60706 1549 aa27.41■■□□□ 1.98
ABCF1-204ENST00000468958 RB1CC1Q8TDY2 1594 aa26.23■■□□□ 1.79
ABCF1-204ENST00000468958 NACADO15069 1562 aa26.14■■□□□ 1.78
ABCF1-204ENST00000468958 DCAF8L2P0C7V8 631 aa25.97■■□□□ 1.75
ABCF1-204ENST00000468958 ZCCHC6Q5VYS8 1495 aaKnown RBP25.91■■□□□ 1.74
ABCF1-204ENST00000468958 MYO15BQ96JP2 1530 aa25.88■■□□□ 1.73
ABCF1-204ENST00000468958 UNC13AQ9UPW8 1703 aa25.88■■□□□ 1.73
ABCF1-204ENST00000468958 DCAF1Q9Y4B6 1507 aa25.71■■□□□ 1.71
ABCF1-204ENST00000468958 BICRAQ9NZM4 1560 aa25.58■■□□□ 1.69
ABCF1-204ENST00000468958 PABPN1Q86U42 306 aaKnown RBP eCLIP25.53■■□□□ 1.68
ABCF1-204ENST00000468958 DNAJC5BQ9UF47 199 aa25.41■■□□□ 1.66
ABCF1-204ENST00000468958 SCRIBQ14160 1630 aa25.39■■□□□ 1.66
ABCF1-204ENST00000468958 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
ABCF1-204ENST00000468958 EIF4G1Q04637 1599 aaKnown RBP24.85■■□□□ 1.57
ABCF1-204ENST00000468958 CC2D2AQ9P2K1 1620 aa24.83■■□□□ 1.57
ABCF1-204ENST00000468958 CECR2Q9BXF3 1484 aa24.61■■□□□ 1.53
ABCF1-204ENST00000468958 SMARCA4P51532 1647 aa24.26■■□□□ 1.47
ABCF1-204ENST00000468958 ATAD2BQ9ULI0 1458 aa24.12■■□□□ 1.45
ABCF1-204ENST00000468958 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
ABCF1-204ENST00000468958 NCAPD3P42695 1498 aa24.11■■□□□ 1.45
ABCF1-204ENST00000468958 SMARCA2P51531 1590 aa24.04■■□□□ 1.44
ABCF1-204ENST00000468958 MROH2BQ7Z745 1585 aa24.04■■□□□ 1.44
ABCF1-204ENST00000468958 HMGXB3Q12766 1538 aa24■■□□□ 1.43
ABCF1-204ENST00000468958 PEG3Q9GZU2 1588 aa24■■□□□ 1.43
ABCF1-204ENST00000468958 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
ABCF1-204ENST00000468958 WIZO95785 1651 aa23.83■■□□□ 1.4
ABCF1-204ENST00000468958 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
ABCF1-204ENST00000468958 NESP48681 1621 aa23.71■■□□□ 1.39
ABCF1-204ENST00000468958 RSF1Q96T23 1441 aaPredicted RBP23.62■■□□□ 1.37
ABCF1-204ENST00000468958 ERCC6Q03468 1493 aa23.55■■□□□ 1.36
ABCF1-204ENST00000468958 LAMC3Q9Y6N6 1575 aa23.54■■□□□ 1.36
ABCF1-204ENST00000468958 KIF21AQ7Z4S6 1674 aa23.5■■□□□ 1.35
ABCF1-204ENST00000468958 TOP2AP11388 1531 aaKnown RBP23.46■■□□□ 1.35
ABCF1-204ENST00000468958 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
ABCF1-204ENST00000468958 CUX2O14529 1486 aa23.4■■□□□ 1.34
ABCF1-204ENST00000468958 CADPSQ9ULU8 1353 aa23.36■■□□□ 1.33
ABCF1-204ENST00000468958 AEBP2Q6ZN18 517 aaPredicted RBP23.3■■□□□ 1.32
ABCF1-204ENST00000468958 PDS5BQ9NTI5 1447 aa23.28■■□□□ 1.32
ABCF1-204ENST00000468958 CFTRP13569 1480 aa23.22■■□□□ 1.31
ABCF1-204ENST00000468958 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
ABCF1-204ENST00000468958 CCDC88BA6NC98 1476 aa23.18■■□□□ 1.3
ABCF1-204ENST00000468958 MRC2Q9UBG0 1479 aa23.14■■□□□ 1.29
ABCF1-204ENST00000468958 FANCD2Q9BXW9 1451 aa23.13■■□□□ 1.29
ABCF1-204ENST00000468958 WDR62O43379 1518 aa23.13■■□□□ 1.29
ABCF1-204ENST00000468958 CEP164Q9UPV0 1460 aa23.11■■□□□ 1.29
ABCF1-204ENST00000468958 URB2Q14146 1524 aaKnown RBP22.99■■□□□ 1.27
ABCF1-204ENST00000468958 DNAJC5Q9H3Z4 198 aa22.94■■□□□ 1.26
ABCF1-204ENST00000468958 TOPBP1Q92547 1522 aa22.77■■□□□ 1.24
ABCF1-204ENST00000468958 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.24
ABCF1-204ENST00000468958 DNMBPQ6XZF7 1577 aa22.73■■□□□ 1.23
ABCF1-204ENST00000468958 ABCC8Q09428 1581 aa22.64■■□□□ 1.22
ABCF1-204ENST00000468958 ZNF608Q9ULD9 1512 aaPredicted RBP22.64■■□□□ 1.21
ABCF1-204ENST00000468958 IFT140Q96RY7 1462 aa22.62■■□□□ 1.21
ABCF1-204ENST00000468958 TARBP1Q13395 1621 aaKnown RBP22.61■■□□□ 1.21
ABCF1-204ENST00000468958 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
ABCF1-204ENST00000468958 EIF4G3O43432 1585 aaKnown RBP22.57■■□□□ 1.2
ABCF1-204ENST00000468958 CUX1P39880 1505 aa22.56■■□□□ 1.2
ABCF1-204ENST00000468958 RAD54L2Q9Y4B4 1467 aa22.49■■□□□ 1.19
ABCF1-204ENST00000468958 FGD5Q6ZNL6 1462 aa22.48■■□□□ 1.19
ABCF1-204ENST00000468958 WDR97A6NE52 1622 aa22.44■■□□□ 1.18
ABCF1-204ENST00000468958 AQRO60306 1485 aaKnown RBP eCLIP22.43■■□□□ 1.181e-8■■■■■ 35
ABCF1-204ENST00000468958 SOGA1O94964 1423 aa22.4■■□□□ 1.18
ABCF1-204ENST00000468958 CHD1O14646 1710 aa22.39■■□□□ 1.17
ABCF1-204ENST00000468958 BIVM-ERCC5R4GMW8 1640 aa22.34■■□□□ 1.17
ABCF1-204ENST00000468958 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
ABCF1-204ENST00000468958 SYNJ1O43426 1573 aa22.33■■□□□ 1.16
ABCF1-204ENST00000468958 OSCARQ8IYS5 282 aa22.31■■□□□ 1.16
ABCF1-204ENST00000468958 PBRM1Q86U86 1689 aa22.29■■□□□ 1.16
ABCF1-204ENST00000468958 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
ABCF1-204ENST00000468958 ABCA5Q8WWZ7 1642 aa22.24■■□□□ 1.15
ABCF1-204ENST00000468958 WRNQ14191 1432 aaPredicted RBP eCLIP22.23■■□□□ 1.15
ABCF1-204ENST00000468958 SNAPC4Q5SXM2 1469 aa22.23■■□□□ 1.15
ABCF1-204ENST00000468958 ABCA10Q8WWZ4 1543 aa22.22■■□□□ 1.15
ABCF1-204ENST00000468958 RIMBP3CA6NJZ7 1639 aa22.19■■□□□ 1.14
ABCF1-204ENST00000468958 RIMBP3BA6NNM3 1639 aa22.19■■□□□ 1.14
ABCF1-204ENST00000468958 RIMBP3Q9UFD9 1639 aa22.19■■□□□ 1.14
ABCF1-204ENST00000468958 GRIN2BQ13224 1484 aa22.17■■□□□ 1.14
ABCF1-204ENST00000468958 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
ABCF1-204ENST00000468958 MAGI1Q96QZ7 1491 aaPredicted RBP22.14■■□□□ 1.13
ABCF1-204ENST00000468958 FBLN2P98095 1184 aa22.1■■□□□ 1.13
ABCF1-204ENST00000468958 ARHGEF11O15085 1522 aa22.1■■□□□ 1.13
ABCF1-204ENST00000468958 TRIM41Q8WV44 630 aa22.08■■□□□ 1.13
ABCF1-204ENST00000468958 SYNJ2O15056 1496 aa22.07■■□□□ 1.12
ABCF1-204ENST00000468958 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
ABCF1-204ENST00000468958 ADAMTS12P58397 1594 aa22.03■■□□□ 1.12
ABCF1-204ENST00000468958 CHMP7Q8WUX9 453 aaPredicted RBP21.99■■□□□ 1.11
ABCF1-204ENST00000468958 ERICH3Q5RHP9 1530 aa21.95■■□□□ 1.1
ABCF1-204ENST00000468958 ARAP1Q96P48 1450 aa21.93■■□□□ 1.1
ABCF1-204ENST00000468958 GRIN2AQ12879 1464 aa21.92■■□□□ 1.1
ABCF1-204ENST00000468958 CEP170Q5SW79 1584 aa21.91■■□□□ 1.1
ABCF1-204ENST00000468958 FHAD1B1AJZ9 1412 aa21.87■■□□□ 1.09
ABCF1-204ENST00000468958 NUP160Q12769 1436 aa21.84■■□□□ 1.09
ABCF1-204ENST00000468958 CYB5RLQ6IPT4 315 aa21.81■■□□□ 1.08
ABCF1-204ENST00000468958 ERCC6L2Q5T890 1561 aa21.81■■□□□ 1.08
ABCF1-204ENST00000468958 SHROOM2Q13796 1616 aa21.78■■□□□ 1.08
ABCF1-204ENST00000468958 KIF27Q86VH2 1401 aa21.74■■□□□ 1.07
ABCF1-204ENST00000468958 CUL7Q14999 1698 aa21.74■■□□□ 1.07
ABCF1-204ENST00000468958 RUSC2Q8N2Y8 1516 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms