RNA–Protein interactions for RNA: ENST00000468267.1

SSBP1-207, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 800 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-207ENST00000468267 NISCHQ9Y2I1 1504 aa42.09■■■■■ 4.33
SSBP1-207ENST00000468267 CCDC180Q9P1Z9 1646 aa37.55■■■■□ 3.6
SSBP1-207ENST00000468267 ABCC9O60706 1549 aa37.05■■■■□ 3.52
SSBP1-207ENST00000468267 RB1CC1Q8TDY2 1594 aa35.51■■■■□ 3.27
SSBP1-207ENST00000468267 NACADO15069 1562 aa35.39■■■■□ 3.26
SSBP1-207ENST00000468267 DCAF8L2P0C7V8 631 aa35.31■■■■□ 3.24
SSBP1-207ENST00000468267 MYO15BQ96JP2 1530 aa35.07■■■■□ 3.21
SSBP1-207ENST00000468267 ZCCHC6Q5VYS8 1495 aaKnown RBP34.97■■■■□ 3.19
SSBP1-207ENST00000468267 DCAF1Q9Y4B6 1507 aa34.81■■■■□ 3.16
SSBP1-207ENST00000468267 UNC13AQ9UPW8 1703 aa34.73■■■■□ 3.15
SSBP1-207ENST00000468267 PABPN1Q86U42 306 aaKnown RBP eCLIP34.6■■■■□ 3.13
SSBP1-207ENST00000468267 BICRAQ9NZM4 1560 aa34.46■■■■□ 3.11
SSBP1-207ENST00000468267 DNAJC5BQ9UF47 199 aa34.36■■■■□ 3.09
SSBP1-207ENST00000468267 SCRIBQ14160 1630 aa34.22■■■■□ 3.07
SSBP1-207ENST00000468267 SHROOM4Q9ULL8 1493 aa34.04■■■■□ 3.04
SSBP1-207ENST00000468267 EIF4G1Q04637 1599 aaKnown RBP33.55■■■□□ 2.96
SSBP1-207ENST00000468267 CC2D2AQ9P2K1 1620 aa33.51■■■□□ 2.96
SSBP1-207ENST00000468267 CECR2Q9BXF3 1484 aa33.34■■■□□ 2.93
SSBP1-207ENST00000468267 AEBP2Q6ZN18 517 aaPredicted RBP32.99■■■□□ 2.87
SSBP1-207ENST00000468267 SMARCA4P51532 1647 aa32.72■■■□□ 2.83
SSBP1-207ENST00000468267 NCAPD3P42695 1498 aa32.67■■■□□ 2.82
SSBP1-207ENST00000468267 ATAD2BQ9ULI0 1458 aa32.63■■■□□ 2.81
SSBP1-207ENST00000468267 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
SSBP1-207ENST00000468267 SMARCA2P51531 1590 aa32.57■■■□□ 2.8
SSBP1-207ENST00000468267 HMGXB3Q12766 1538 aa32.46■■■□□ 2.79
SSBP1-207ENST00000468267 MROH2BQ7Z745 1585 aa32.42■■■□□ 2.78
SSBP1-207ENST00000468267 PEG3Q9GZU2 1588 aa32.41■■■□□ 2.78
SSBP1-207ENST00000468267 BAZ1BQ9UIG0 1483 aaKnown RBP32.33■■■□□ 2.77
SSBP1-207ENST00000468267 WIZO95785 1651 aa32.06■■■□□ 2.72
SSBP1-207ENST00000468267 NESP48681 1621 aa31.98■■■□□ 2.71
SSBP1-207ENST00000468267 ERCC6Q03468 1493 aa31.96■■■□□ 2.71
SSBP1-207ENST00000468267 RSF1Q96T23 1441 aaPredicted RBP31.94■■■□□ 2.7
SSBP1-207ENST00000468267 LAMC3Q9Y6N6 1575 aa31.85■■■□□ 2.69
SSBP1-207ENST00000468267 CUX2O14529 1486 aa31.75■■■□□ 2.67
SSBP1-207ENST00000468267 CADPSQ9ULU8 1353 aa31.7■■■□□ 2.67
SSBP1-207ENST00000468267 TOP2AP11388 1531 aaKnown RBP31.69■■■□□ 2.66
SSBP1-207ENST00000468267 PDS5BQ9NTI5 1447 aa31.66■■■□□ 2.66
SSBP1-207ENST00000468267 KIF21AQ7Z4S6 1674 aa31.6■■■□□ 2.65
SSBP1-207ENST00000468267 THOC2Q8NI27 1593 aaKnown RBP31.56■■■□□ 2.64
SSBP1-207ENST00000468267 CFTRP13569 1480 aa31.44■■■□□ 2.62
SSBP1-207ENST00000468267 CCDC88BA6NC98 1476 aa31.34■■■□□ 2.61
SSBP1-207ENST00000468267 MRC2Q9UBG0 1479 aa31.33■■■□□ 2.61
SSBP1-207ENST00000468267 FANCD2Q9BXW9 1451 aa31.33■■■□□ 2.61
SSBP1-207ENST00000468267 CEP164Q9UPV0 1460 aa31.31■■■□□ 2.6
SSBP1-207ENST00000468267 WDR62O43379 1518 aa31.24■■■□□ 2.59
SSBP1-207ENST00000468267 DNAJC5Q9H3Z4 198 aa31.2■■■□□ 2.59
SSBP1-207ENST00000468267 PRDM2Q13029 1718 aa31.18■■■□□ 2.58
SSBP1-207ENST00000468267 CHIC1Q5VXU3 224 aa31.04■■■□□ 2.56
SSBP1-207ENST00000468267 URB2Q14146 1524 aaKnown RBP31.03■■■□□ 2.56
SSBP1-207ENST00000468267 SUPT5HO00267 1087 aaKnown RBP30.89■■■□□ 2.54
SSBP1-207ENST00000468267 TOPBP1Q92547 1522 aa30.79■■■□□ 2.52
SSBP1-207ENST00000468267 ABCC8Q09428 1581 aa30.78■■■□□ 2.52
SSBP1-207ENST00000468267 DNMBPQ6XZF7 1577 aa30.72■■■□□ 2.51
SSBP1-207ENST00000468267 IFT140Q96RY7 1462 aa30.67■■■□□ 2.5
SSBP1-207ENST00000468267 ZNF608Q9ULD9 1512 aaPredicted RBP30.57■■■□□ 2.48
SSBP1-207ENST00000468267 POLA1P09884 1462 aaPredicted RBP30.5■■■□□ 2.47
SSBP1-207ENST00000468267 TARBP1Q13395 1621 aaKnown RBP30.49■■■□□ 2.47
SSBP1-207ENST00000468267 CUX1P39880 1505 aa30.44■■■□□ 2.46
SSBP1-207ENST00000468267 EIF4G3O43432 1585 aaKnown RBP30.41■■■□□ 2.46
SSBP1-207ENST00000468267 OSCARQ8IYS5 282 aa30.41■■■□□ 2.46
SSBP1-207ENST00000468267 SOGA1O94964 1423 aa30.39■■■□□ 2.46
SSBP1-207ENST00000468267 RAD54L2Q9Y4B4 1467 aa30.38■■■□□ 2.45
SSBP1-207ENST00000468267 FGD5Q6ZNL6 1462 aa30.38■■■□□ 2.45
SSBP1-207ENST00000468267 AQRO60306 1485 aaKnown RBP eCLIP30.37■■■□□ 2.45
SSBP1-207ENST00000468267 TDRD9Q8NDG6 1382 aaKnown RBP30.26■■■□□ 2.43
SSBP1-207ENST00000468267 WDR97A6NE52 1622 aa30.22■■■□□ 2.43
SSBP1-207ENST00000468267 CHD1O14646 1710 aa30.11■■■□□ 2.41
SSBP1-207ENST00000468267 WRNQ14191 1432 aaPredicted RBP eCLIP30.11■■■□□ 2.411e-7■□□□□ 10.2
SSBP1-207ENST00000468267 TOP2BQ02880 1626 aa30.09■■■□□ 2.41
SSBP1-207ENST00000468267 BIVM-ERCC5R4GMW8 1640 aa30.09■■■□□ 2.41
SSBP1-207ENST00000468267 ABCA10Q8WWZ4 1543 aa30.07■■■□□ 2.4
SSBP1-207ENST00000468267 FBLN2P98095 1184 aa30.06■■■□□ 2.4
SSBP1-207ENST00000468267 SYNJ1O43426 1573 aa30.06■■■□□ 2.4
SSBP1-207ENST00000468267 GRIN2BQ13224 1484 aa30.06■■■□□ 2.4
SSBP1-207ENST00000468267 SNAPC4Q5SXM2 1469 aa30.05■■■□□ 2.4
SSBP1-207ENST00000468267 GAPVD1Q14C86 1478 aa30.03■■■□□ 2.4
SSBP1-207ENST00000468267 MAGI1Q96QZ7 1491 aaPredicted RBP30.01■■■□□ 2.4
SSBP1-207ENST00000468267 TRIM41Q8WV44 630 aa30■■■□□ 2.39
SSBP1-207ENST00000468267 ABCA5Q8WWZ7 1642 aa29.98■■■□□ 2.39
SSBP1-207ENST00000468267 PBRM1Q86U86 1689 aa29.98■■■□□ 2.39
SSBP1-207ENST00000468267 CHMP7Q8WUX9 453 aaPredicted RBP29.94■■■□□ 2.38
SSBP1-207ENST00000468267 RIMBP3CA6NJZ7 1639 aa29.93■■■□□ 2.38
SSBP1-207ENST00000468267 RIMBP3BA6NNM3 1639 aa29.93■■■□□ 2.38
SSBP1-207ENST00000468267 RIMBP3Q9UFD9 1639 aa29.93■■■□□ 2.38
SSBP1-207ENST00000468267 SYNJ2O15056 1496 aa29.9■■■□□ 2.38
SSBP1-207ENST00000468267 ARHGEF11O15085 1522 aa29.88■■■□□ 2.37
SSBP1-207ENST00000468267 CLASP1Q7Z460 1538 aa29.77■■■□□ 2.36
SSBP1-207ENST00000468267 ERICH3Q5RHP9 1530 aa29.71■■■□□ 2.35
SSBP1-207ENST00000468267 ADAMTS12P58397 1594 aa29.71■■■□□ 2.35
SSBP1-207ENST00000468267 GRIN2AQ12879 1464 aa29.67■■■□□ 2.34
SSBP1-207ENST00000468267 FHAD1B1AJZ9 1412 aa29.66■■■□□ 2.34
SSBP1-207ENST00000468267 CYB5RLQ6IPT4 315 aa29.65■■■□□ 2.34
SSBP1-207ENST00000468267 ARAP1Q96P48 1450 aa29.62■■■□□ 2.33
SSBP1-207ENST00000468267 NUP160Q12769 1436 aa29.55■■■□□ 2.32
SSBP1-207ENST00000468267 CEP170Q5SW79 1584 aa29.53■■■□□ 2.32
SSBP1-207ENST00000468267 KIF27Q86VH2 1401 aa29.52■■■□□ 2.32
SSBP1-207ENST00000468267 IGF1RP08069 1367 aa29.47■■■□□ 2.31
SSBP1-207ENST00000468267 SHROOM2Q13796 1616 aa29.38■■■□□ 2.29
SSBP1-207ENST00000468267 CUL7Q14999 1698 aa29.37■■■□□ 2.29
SSBP1-207ENST00000468267 ERCC6L2Q5T890 1561 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms