RNA–Protein interactions for RNA: ENST00000467288.6

GMDS-203, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

TSL 5

Gene GMDS, Length 900 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-203ENST00000467288 NISCHQ9Y2I1 1504 aa47.86■■■■■ 5.25
GMDS-203ENST00000467288 CCDC180Q9P1Z9 1646 aa42.69■■■■■ 4.42
GMDS-203ENST00000467288 ABCC9O60706 1549 aa42.38■■■■■ 4.37
GMDS-203ENST00000467288 RB1CC1Q8TDY2 1594 aa40.34■■■■■ 4.05
GMDS-203ENST00000467288 NACADO15069 1562 aa40.23■■■■■ 4.03
GMDS-203ENST00000467288 DCAF8L2P0C7V8 631 aa40.07■■■■■ 4.01
GMDS-203ENST00000467288 DNAJC5BQ9UF47 199 aa39.99■■■■□ 3.99
GMDS-203ENST00000467288 MYO15BQ96JP2 1530 aa39.91■■■■□ 3.98
GMDS-203ENST00000467288 ZCCHC6Q5VYS8 1495 aaKnown RBP39.8■■■■□ 3.96
GMDS-203ENST00000467288 DCAF1Q9Y4B6 1507 aa39.6■■■■□ 3.93
GMDS-203ENST00000467288 PABPN1Q86U42 306 aaKnown RBP eCLIP39.58■■■■□ 3.93
GMDS-203ENST00000467288 UNC13AQ9UPW8 1703 aa39.4■■■■□ 3.9
GMDS-203ENST00000467288 BICRAQ9NZM4 1560 aa39.16■■■■□ 3.86
GMDS-203ENST00000467288 SCRIBQ14160 1630 aa38.89■■■■□ 3.82
GMDS-203ENST00000467288 SHROOM4Q9ULL8 1493 aa38.73■■■■□ 3.79
GMDS-203ENST00000467288 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
GMDS-203ENST00000467288 CC2D2AQ9P2K1 1620 aa38.16■■■■□ 3.7
GMDS-203ENST00000467288 EIF4G1Q04637 1599 aaKnown RBP38.14■■■■□ 3.7
GMDS-203ENST00000467288 SMARCA4P51532 1647 aa37.2■■■■□ 3.55
GMDS-203ENST00000467288 NCAPD3P42695 1498 aa37.15■■■■□ 3.54
GMDS-203ENST00000467288 ATAD2BQ9ULI0 1458 aa37.11■■■■□ 3.53
GMDS-203ENST00000467288 BAZ1AQ9NRL2 1556 aaPredicted RBP37.11■■■■□ 3.53
GMDS-203ENST00000467288 SMARCA2P51531 1590 aa37.02■■■■□ 3.52
GMDS-203ENST00000467288 HMGXB3Q12766 1538 aa36.91■■■■□ 3.5
GMDS-203ENST00000467288 MROH2BQ7Z745 1585 aa36.88■■■■□ 3.49
GMDS-203ENST00000467288 PEG3Q9GZU2 1588 aa36.87■■■■□ 3.49
GMDS-203ENST00000467288 DNAJC5Q9H3Z4 198 aa36.77■■■■□ 3.48
GMDS-203ENST00000467288 BAZ1BQ9UIG0 1483 aaKnown RBP36.75■■■■□ 3.47
GMDS-203ENST00000467288 ERCC6Q03468 1493 aa36.57■■■■□ 3.45
GMDS-203ENST00000467288 CUX2O14529 1486 aa36.49■■■■□ 3.43
GMDS-203ENST00000467288 WIZO95785 1651 aa36.45■■■■□ 3.42
GMDS-203ENST00000467288 NESP48681 1621 aa36.37■■■■□ 3.41
GMDS-203ENST00000467288 RSF1Q96T23 1441 aaPredicted RBP36.34■■■■□ 3.41
GMDS-203ENST00000467288 LAMC3Q9Y6N6 1575 aa36.19■■■■□ 3.38
GMDS-203ENST00000467288 TOP2AP11388 1531 aaKnown RBP36.05■■■■□ 3.36
GMDS-203ENST00000467288 CADPSQ9ULU8 1353 aa36.04■■■■□ 3.36
GMDS-203ENST00000467288 PDS5BQ9NTI5 1447 aa35.96■■■■□ 3.35
GMDS-203ENST00000467288 THOC2Q8NI27 1593 aaKnown RBP35.86■■■■□ 3.33
GMDS-203ENST00000467288 KIF21AQ7Z4S6 1674 aa35.86■■■■□ 3.33
GMDS-203ENST00000467288 CFTRP13569 1480 aa35.75■■■■□ 3.31
GMDS-203ENST00000467288 CCDC88BA6NC98 1476 aa35.63■■■■□ 3.29
GMDS-203ENST00000467288 MRC2Q9UBG0 1479 aa35.61■■■■□ 3.29
GMDS-203ENST00000467288 FANCD2Q9BXW9 1451 aa35.6■■■■□ 3.29
GMDS-203ENST00000467288 CEP164Q9UPV0 1460 aa35.59■■■■□ 3.29
GMDS-203ENST00000467288 WDR62O43379 1518 aa35.52■■■■□ 3.28
GMDS-203ENST00000467288 PRDM2Q13029 1718 aa35.4■■■■□ 3.26
GMDS-203ENST00000467288 URB2Q14146 1524 aaKnown RBP35.28■■■■□ 3.24
GMDS-203ENST00000467288 TRIM41Q8WV44 630 aa35.14■■■■□ 3.22
GMDS-203ENST00000467288 SUPT5HO00267 1087 aaKnown RBP35.11■■■■□ 3.21
GMDS-203ENST00000467288 TOPBP1Q92547 1522 aa35.01■■■■□ 3.19
GMDS-203ENST00000467288 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
GMDS-203ENST00000467288 ABCC8Q09428 1581 aa34.98■■■■□ 3.19
GMDS-203ENST00000467288 DNMBPQ6XZF7 1577 aa34.92■■■■□ 3.18
GMDS-203ENST00000467288 IFT140Q96RY7 1462 aa34.87■■■■□ 3.17
GMDS-203ENST00000467288 ZNF608Q9ULD9 1512 aaPredicted RBP34.74■■■■□ 3.15
GMDS-203ENST00000467288 POLA1P09884 1462 aaPredicted RBP34.68■■■■□ 3.14
GMDS-203ENST00000467288 TARBP1Q13395 1621 aaKnown RBP34.65■■■■□ 3.14
GMDS-203ENST00000467288 CUX1P39880 1505 aa34.61■■■■□ 3.13
GMDS-203ENST00000467288 EIF4G3O43432 1585 aaKnown RBP34.56■■■■□ 3.12
GMDS-203ENST00000467288 FGD5Q6ZNL6 1462 aa34.54■■■■□ 3.12
GMDS-203ENST00000467288 SOGA1O94964 1423 aa34.54■■■■□ 3.12
GMDS-203ENST00000467288 RAD54L2Q9Y4B4 1467 aa34.53■■■■□ 3.12
GMDS-203ENST00000467288 AQRO60306 1485 aaKnown RBP eCLIP34.5■■■■□ 3.11
GMDS-203ENST00000467288 TDRD9Q8NDG6 1382 aaKnown RBP34.38■■■■□ 3.09
GMDS-203ENST00000467288 WDR97A6NE52 1622 aa34.36■■■■□ 3.09
GMDS-203ENST00000467288 RIMBP3CA6NJZ7 1639 aa34.31■■■■□ 3.08
GMDS-203ENST00000467288 RIMBP3BA6NNM3 1639 aa34.31■■■■□ 3.08
GMDS-203ENST00000467288 RIMBP3Q9UFD9 1639 aa34.31■■■■□ 3.08
GMDS-203ENST00000467288 FBLN2P98095 1184 aa34.29■■■■□ 3.08
GMDS-203ENST00000467288 ARHGEF11O15085 1522 aa34.26■■■■□ 3.08
GMDS-203ENST00000467288 WRNQ14191 1432 aaPredicted RBP eCLIP34.26■■■■□ 3.07
GMDS-203ENST00000467288 TOP2BQ02880 1626 aa34.22■■■■□ 3.07
GMDS-203ENST00000467288 BIVM-ERCC5R4GMW8 1640 aa34.22■■■■□ 3.07
GMDS-203ENST00000467288 CYB5RLQ6IPT4 315 aa34.21■■■■□ 3.07
GMDS-203ENST00000467288 ABCA10Q8WWZ4 1543 aa34.2■■■■□ 3.07
GMDS-203ENST00000467288 SYNJ1O43426 1573 aa34.19■■■■□ 3.06
GMDS-203ENST00000467288 CHD1O14646 1710 aa34.18■■■■□ 3.06
GMDS-203ENST00000467288 GRIN2BQ13224 1484 aa34.17■■■■□ 3.06
GMDS-203ENST00000467288 SNAPC4Q5SXM2 1469 aa34.16■■■■□ 3.06
GMDS-203ENST00000467288 GAPVD1Q14C86 1478 aa34.13■■■■□ 3.05
GMDS-203ENST00000467288 MAGI1Q96QZ7 1491 aaPredicted RBP34.12■■■■□ 3.05
GMDS-203ENST00000467288 ABCA5Q8WWZ7 1642 aa34.09■■■■□ 3.05
GMDS-203ENST00000467288 PBRM1Q86U86 1689 aa34.04■■■■□ 3.04
GMDS-203ENST00000467288 CHMP7Q8WUX9 453 aaPredicted RBP34■■■■□ 3.03
GMDS-203ENST00000467288 SYNJ2O15056 1496 aa33.99■■■■□ 3.03
GMDS-203ENST00000467288 ARAP1Q96P48 1450 aa33.94■■■■□ 3.02
GMDS-203ENST00000467288 CLASP1Q7Z460 1538 aa33.85■■■■□ 3.01
GMDS-203ENST00000467288 TRHP20396 242 aaPredicted RBP33.85■■■■□ 3.01
GMDS-203ENST00000467288 ADAMTS12P58397 1594 aa33.78■■■■□ 3
GMDS-203ENST00000467288 ERICH3Q5RHP9 1530 aa33.78■■■■□ 3
GMDS-203ENST00000467288 FHAD1B1AJZ9 1412 aa33.73■■■□□ 2.99
GMDS-203ENST00000467288 GRIN2AQ12879 1464 aa33.73■■■□□ 2.99
GMDS-203ENST00000467288 NUP160Q12769 1436 aa33.62■■■□□ 2.97
GMDS-203ENST00000467288 CEP170Q5SW79 1584 aa33.57■■■□□ 2.96
GMDS-203ENST00000467288 KIF27Q86VH2 1401 aa33.57■■■□□ 2.96
GMDS-203ENST00000467288 IGF1RP08069 1367 aa33.5■■■□□ 2.95
GMDS-203ENST00000467288 CUL7Q14999 1698 aa33.39■■■□□ 2.94
GMDS-203ENST00000467288 SHROOM2Q13796 1616 aa33.39■■■□□ 2.93
GMDS-203ENST00000467288 ERCC6L2Q5T890 1561 aa33.34■■■□□ 2.93
GMDS-203ENST00000467288 RUSC2Q8N2Y8 1516 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms