RNA–Protein interactions for RNA: ENST00000466776.5

GTF3A-205, Transcript of general transcription factor IIIA, humanhuman

TSL 5

Gene GTF3A, Length 461 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-205ENST00000466776 NISCHQ9Y2I1 1504 aa29.93■■■□□ 2.38
GTF3A-205ENST00000466776 CCDC180Q9P1Z9 1646 aa27■■□□□ 1.91
GTF3A-205ENST00000466776 ABCC9O60706 1549 aa26.87■■□□□ 1.89
GTF3A-205ENST00000466776 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
GTF3A-205ENST00000466776 AEBP2Q6ZN18 517 aaPredicted RBP25.67■■□□□ 1.7
GTF3A-205ENST00000466776 NACADO15069 1562 aa25.48■■□□□ 1.67
GTF3A-205ENST00000466776 DCAF8L2P0C7V8 631 aa25.25■■□□□ 1.63
GTF3A-205ENST00000466776 UNC13AQ9UPW8 1703 aa25.12■■□□□ 1.61
GTF3A-205ENST00000466776 MYO15BQ96JP2 1530 aa25.12■■□□□ 1.61
GTF3A-205ENST00000466776 DNAJC5BQ9UF47 199 aa25.09■■□□□ 1.61
GTF3A-205ENST00000466776 PABPN1Q86U42 306 aaKnown RBP eCLIP24.95■■□□□ 1.58
GTF3A-205ENST00000466776 BICRAQ9NZM4 1560 aa24.83■■□□□ 1.57
GTF3A-205ENST00000466776 ZCCHC6Q5VYS8 1495 aaKnown RBP24.81■■□□□ 1.56
GTF3A-205ENST00000466776 DCAF1Q9Y4B6 1507 aa24.77■■□□□ 1.56
GTF3A-205ENST00000466776 SHROOM4Q9ULL8 1493 aa24.62■■□□□ 1.53
GTF3A-205ENST00000466776 SCRIBQ14160 1630 aa24.51■■□□□ 1.51
GTF3A-205ENST00000466776 CC2D2AQ9P2K1 1620 aa24.32■■□□□ 1.48
GTF3A-205ENST00000466776 EIF4G1Q04637 1599 aaKnown RBP24.27■■□□□ 1.48
GTF3A-205ENST00000466776 CECR2Q9BXF3 1484 aa24.24■■□□□ 1.47
GTF3A-205ENST00000466776 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
GTF3A-205ENST00000466776 NCAPD3P42695 1498 aa23.45■■□□□ 1.34
GTF3A-205ENST00000466776 SMARCA4P51532 1647 aa23.41■■□□□ 1.34
GTF3A-205ENST00000466776 SMARCA2P51531 1590 aa23.4■■□□□ 1.34
GTF3A-205ENST00000466776 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
GTF3A-205ENST00000466776 HMGXB3Q12766 1538 aa23.34■■□□□ 1.33
GTF3A-205ENST00000466776 BAZ1AQ9NRL2 1556 aaPredicted RBP23.3■■□□□ 1.32
GTF3A-205ENST00000466776 ERCC6Q03468 1493 aa23.29■■□□□ 1.32
GTF3A-205ENST00000466776 CUX2O14529 1486 aa23.25■■□□□ 1.31
GTF3A-205ENST00000466776 BAZ1BQ9UIG0 1483 aaKnown RBP23.2■■□□□ 1.3
GTF3A-205ENST00000466776 PEG3Q9GZU2 1588 aa23.17■■□□□ 1.3
GTF3A-205ENST00000466776 DNAJC5Q9H3Z4 198 aa23.16■■□□□ 1.3
GTF3A-205ENST00000466776 NESP48681 1621 aa23.05■■□□□ 1.28
GTF3A-205ENST00000466776 MROH2BQ7Z745 1585 aa23.03■■□□□ 1.28
GTF3A-205ENST00000466776 LAMC3Q9Y6N6 1575 aa23.01■■□□□ 1.27
GTF3A-205ENST00000466776 THOC2Q8NI27 1593 aaKnown RBP22.91■■□□□ 1.26
GTF3A-205ENST00000466776 KIF21AQ7Z4S6 1674 aa22.87■■□□□ 1.25
GTF3A-205ENST00000466776 PDS5BQ9NTI5 1447 aa22.84■■□□□ 1.25
GTF3A-205ENST00000466776 WIZO95785 1651 aa22.81■■□□□ 1.24
GTF3A-205ENST00000466776 CADPSQ9ULU8 1353 aa22.74■■□□□ 1.23
GTF3A-205ENST00000466776 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.21
GTF3A-205ENST00000466776 WDR62O43379 1518 aa22.59■■□□□ 1.21
GTF3A-205ENST00000466776 CEP164Q9UPV0 1460 aa22.57■■□□□ 1.2
GTF3A-205ENST00000466776 TOP2AP11388 1531 aaKnown RBP22.53■■□□□ 1.2
GTF3A-205ENST00000466776 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
GTF3A-205ENST00000466776 FANCD2Q9BXW9 1451 aa22.5■■□□□ 1.19
GTF3A-205ENST00000466776 CFTRP13569 1480 aa22.47■■□□□ 1.19
GTF3A-205ENST00000466776 PRDM2Q13029 1718 aa22.44■■□□□ 1.18
GTF3A-205ENST00000466776 URB2Q14146 1524 aaKnown RBP22.28■■□□□ 1.16
GTF3A-205ENST00000466776 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
GTF3A-205ENST00000466776 TRIM41Q8WV44 630 aa22.16■■□□□ 1.14
GTF3A-205ENST00000466776 OSCARQ8IYS5 282 aa22.13■■□□□ 1.13
GTF3A-205ENST00000466776 IFT140Q96RY7 1462 aa22.1■■□□□ 1.13
GTF3A-205ENST00000466776 ABCC8Q09428 1581 aa22.1■■□□□ 1.13
GTF3A-205ENST00000466776 TOPBP1Q92547 1522 aa22.07■■□□□ 1.12
GTF3A-205ENST00000466776 DNMBPQ6XZF7 1577 aa22.03■■□□□ 1.12
GTF3A-205ENST00000466776 SENP3Q9H4L4 574 aaPredicted RBP22.02■■□□□ 1.12
GTF3A-205ENST00000466776 ZNF608Q9ULD9 1512 aaPredicted RBP21.99■■□□□ 1.11
GTF3A-205ENST00000466776 EIF4G3O43432 1585 aaKnown RBP21.96■■□□□ 1.11
GTF3A-205ENST00000466776 RIMBP3CA6NJZ7 1639 aa21.89■■□□□ 1.09
GTF3A-205ENST00000466776 RIMBP3BA6NNM3 1639 aa21.89■■□□□ 1.09
GTF3A-205ENST00000466776 RIMBP3Q9UFD9 1639 aa21.89■■□□□ 1.09
GTF3A-205ENST00000466776 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
GTF3A-205ENST00000466776 CHD1O14646 1710 aa21.85■■□□□ 1.09
GTF3A-205ENST00000466776 POLA1P09884 1462 aaPredicted RBP21.83■■□□□ 1.08
GTF3A-205ENST00000466776 ARHGEF11O15085 1522 aa21.8■■□□□ 1.08
GTF3A-205ENST00000466776 AQRO60306 1485 aaKnown RBP eCLIP21.79■■□□□ 1.086e-7■■■■□ 20.5
GTF3A-205ENST00000466776 WDR97A6NE52 1622 aa21.77■■□□□ 1.07
GTF3A-205ENST00000466776 SOGA1O94964 1423 aa21.72■■□□□ 1.07
GTF3A-205ENST00000466776 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
GTF3A-205ENST00000466776 FGD5Q6ZNL6 1462 aa21.7■■□□□ 1.06
GTF3A-205ENST00000466776 FBLN2P98095 1184 aa21.69■■□□□ 1.06
GTF3A-205ENST00000466776 CUX1P39880 1505 aa21.65■■□□□ 1.06
GTF3A-205ENST00000466776 TDRD9Q8NDG6 1382 aaKnown RBP21.64■■□□□ 1.06
GTF3A-205ENST00000466776 SNAPC4Q5SXM2 1469 aa21.62■■□□□ 1.05
GTF3A-205ENST00000466776 MAGI1Q96QZ7 1491 aaPredicted RBP21.61■■□□□ 1.05
GTF3A-205ENST00000466776 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
GTF3A-205ENST00000466776 CYB5RLQ6IPT4 315 aa21.59■■□□□ 1.05
GTF3A-205ENST00000466776 SYNJ1O43426 1573 aa21.58■■□□□ 1.05
GTF3A-205ENST00000466776 PBRM1Q86U86 1689 aa21.58■■□□□ 1.05
GTF3A-205ENST00000466776 GRIN2BQ13224 1484 aa21.58■■□□□ 1.04
GTF3A-205ENST00000466776 ARAP1Q96P48 1450 aa21.54■■□□□ 1.04
GTF3A-205ENST00000466776 CHMP7Q8WUX9 453 aaPredicted RBP21.54■■□□□ 1.04
GTF3A-205ENST00000466776 CLASP1Q7Z460 1538 aa21.52■■□□□ 1.04
GTF3A-205ENST00000466776 SUPT5HO00267 1087 aaKnown RBP21.51■■□□□ 1.03
GTF3A-205ENST00000466776 SYNJ2O15056 1496 aa21.51■■□□□ 1.03
GTF3A-205ENST00000466776 GAPVD1Q14C86 1478 aa21.49■■□□□ 1.03
GTF3A-205ENST00000466776 ABCA10Q8WWZ4 1543 aa21.46■■□□□ 1.03
GTF3A-205ENST00000466776 ABCA5Q8WWZ7 1642 aa21.46■■□□□ 1.03
GTF3A-205ENST00000466776 TRHP20396 242 aaPredicted RBP21.4■■□□□ 1.02
GTF3A-205ENST00000466776 BIVM-ERCC5R4GMW8 1640 aa21.39■■□□□ 1.01
GTF3A-205ENST00000466776 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
GTF3A-205ENST00000466776 TOP2BQ02880 1626 aa21.37■■□□□ 1.01
GTF3A-205ENST00000466776 ADAMTS12P58397 1594 aa21.31■■□□□ 1
GTF3A-205ENST00000466776 GRIN2AQ12879 1464 aa21.3■■□□□ 1
GTF3A-205ENST00000466776 ERICH3Q5RHP9 1530 aa21.23■□□□□ 0.99
GTF3A-205ENST00000466776 FHAD1B1AJZ9 1412 aa21.22■□□□□ 0.99
GTF3A-205ENST00000466776 CEP170Q5SW79 1584 aa21.21■□□□□ 0.99
GTF3A-205ENST00000466776 NUP160Q12769 1436 aa21.2■□□□□ 0.98
GTF3A-205ENST00000466776 SHROOM2Q13796 1616 aa21.16■□□□□ 0.98
GTF3A-205ENST00000466776 ERCC6L2Q5T890 1561 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms